At1g21690 SYNGENTA 51792
Genomic Sequence (from TAIR)
gatagtcttgctattgcggtttggaatcctcatgaattatccaatgtcaattcaatctcagcgtgattgaagacaggtttttaaattccaaaatctcttc tttaatcacgtttataaatcagttttgatacattattactatgttttgcgtacgtgtcagaagattactatccatgtaatgtctgaagaattaggtgcga gtcaaaagtcataacagtcgataagatatcaaaccctcttcgtgacttggaaggtttgaggcgggggcgggaaaatccagaaaacgtcggataatgttta taaaggagtctctccgtcaccggagaaaaattagaagaaaaaagaggcgaagaagagagaggaATGGCGCCAGTTCTTCAGAGCTCACAGCCATGGGTTG AGAAATAgtacgatttcttctcactgattttttatttcgttgacggaatttatgtggggtttaataaactcattgtttccgatttggatctagCCGGCCG AAGCAGGTTAAGGACGTGGCTCACCAGGAAGAGGTGGTTCGTGTCCTCACCAACACTCTCCAGACTGCTGACgtaatttcactataacctctttgtttat cgcgaaacaaatccctaattattaaaatctgattttgtacaagtgtgaaaaaccctagatgtcgaatttggttctcaattctgggttttaattttttgtt tgtctctctgttgtagTGCCCGCACATGCTCTTCTATGGACCACCAGGCACTGGAAAAACCACTACTGCTCTTGCCATCGCTCACCAGCTCTTTGGgtaa cgtattcatttgataatttgtgatagctgaaattcggatgactttttgattgattcatttgtgtgtacttagtttgtatgagaccttgtgatctctaata tgatacattcagatttgtgattcaaataactcggtttttttttttttttatgtagaagctgatataatatgcacactcagactctgtggttgcataatga tataccaact►tctcccattag◄gtagc►tagacagtataccaagatgtgaattcataggaatagtaatcattatgatttttctatgtaagtggttagtt tttgaagctgaattg◄tcttgttcttctttccattgcctccatgggtgtcgtcccatatgagtcggtttcagcttcttttgagagtaataatcacagatt tattttcatgagcctggccttgttttgttatttcattttgctatattatgtggatttttacaatgggcatgtgaactaactatagagtgtttacagACCT GAACTATACAAGTCTAGGGTGTTGGAGCTTAATGCAAGTGATGACAGAGGTATTAATGTTGTTCGGACTAAGATCAAGGATTTTGCTGCTGTTGCTGTTG GGTCTAATCATCGTCAAAGgtgtcgtactttttattaagttttttttttttttggggtcattttctcgtttctgcatttcatctaagaccttcgatttga tacttcagTGGTTATCCTTGCCCATCGTTTAAGATCATCATCCTAGATGAGGCTGATTCGATGACAGAAGATGCTCAGgtacgttgaacatctattattc actaccgcatttgtacgtttgatatgtgtttaccatgagctattttattgactgtccagAATGCCTTGAGGCGCACAATGGAAACTTACTCCAAAGTCAC CAGATTCTTTTTCATATGTAATTACATCAGCAGgtaattctgtcacaacagccttttattttttttccttctgttctcatttgttctccaattttctctc tggttattgaaaatgattgctttttcgtttatacttttgttatattttggaacatgctcatagtgagctacttgctgaactatgaacctactgattttga tcacccttacaaactttgatctcttgttctgtagGATCATAGAGCCCCTTGCTTCCAGGTGTGCGAAGTTCAGGTTTAAACCACTTTCCGAAGAAGTCAT GAGTAACCGTATATTGCATATTTGTAATGAAGAAGGTCTCAGCCTTGATGGAGAGgtatgagcaaatgcttcaatgttttccgtattattttagttttgt gaaagctgattattgtagccgtttcctattcagGCTCTTTCAACTTTGAGCTCCATATCACAAGGTGATCTCCGTAGGGCCATCACATATCTGCAGgtaa gataaaactatctgaaatatttgttactagacgaaatcgaccatagaaatgtgaaacactctttctacctgaatattgcagAGTGCTACTCGGTTGTTTG GATCAACAATAACTTCTACAGATTTACTCAATGTGTCTGGGgtaaggatgaagttaacccaatatttgcataagtgtatggtaggttcagccatgtcaga cttgctgatgtttaatatggatgtctaacgaatctatcagGTAGTTCCTCTAGAGGTAGTCAATAAACTTTTTACTGCATGCAAAAGTGGTGATTTCGAT ATTGCAAACAAGGAAGTGGATAACATAGTTGCAGAAGGATATCCTGCATCTCAAATCATCAATCAGgttttctattttcctctcttatttttaccccatt taagtcatgcaactgtggctataaccccttctatacaacactctttcagCTATTCGATATAGTTGCGGAGGCTGACAGTGACATAACAGACATGCAAAAG GCTAAGATCTGCAAATGTTTAGCTGAAACTGATAAGgtaagactttcccgtactaattttccttacttgtgtctcttttagagcctcaagtgagatcaat taccaacatcttgactcaattatattacgggttttgagtgaagttcacatcttagatttttgccatttgaatctgtagatatgttgcaatcttgctaagg atgtctctgttacctctagtgataataaaatatctcacatcttttatttttaatgtatccagCGACTTGTAGACGGGGCGGATGAGTACTTGCAGCTTCT GGATGTGGCAAGCAGTACAATTTGTGCCCTCTCAGAAATGGCTCAAGACTTCTAAtgcaaattctgcttgaattggacctgtgccttaagacttatgaga ctatcatagtgtaggttttgataaaaagttggagcgttatgacgttttactggttacttatctgttattgttttaagaaaaactattagatatatttatt gcatcattacttaagtctatttgttttgtgggtaagatcattaaatatcattacaatgtgaaatacatgatcgaatcaaaataattaacatctcttataa ccaacaaaatcatgaccagatagcttgatggacattgcttctgttgtaagaattagtgaatccctttatctatatccaatattgacaccgtaaaaggagt aatgtgtttctttactagttggatatatatacagtgtagatcccaaaatgtaaatataaaaataaaaaatatagtagatttatataattatatttttcta ttta
Border_1 (51792_LB1D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTCTAATGGGAGAAGTTG
GTATATCATTATGCAACCACAGAGTCTGAGTGTGCATATTATATCAGCTTCTACATAAAAAAAAAAAAAACCCG
| Start of BLAST Alignment: | NT 749 / Intron 3 of 11 |
| First 15 bp Perfect Match: | NT 658 / Intron 3 of 11 |
BLAST Details: Query Sequence: 51792_LB1D Length: (274 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g21690 68414.t02433 replication factor C 37 kDa, putat... 375 3.7e-11 1 At3g61260 68416.t06335 DNA-binding family protein / remor... 153 0.34 1 At4g03380 68417.t00420 expressed protein 145 0.9999 1 >At1g21690 68414.t02433 replication factor C 37 kDa, putative Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit (Replication factor C 37 kDa subunit, A1 37 kDa subunit, RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains Pfam domain, PF00004: ATPase, AAA family Length = 2962 Minus Strand HSPs: Score = 375 (62.3 bits), Expect = 3.7e-11, P = 3.7e-11 Identities = 125/171 (73%), Positives = 125/171 (73%), Strand = Minus / Plus Query: 256 ATGTAGAAGCTGATATAATATGCACACTCAGACTCTGTGGTTGCATAATGATATACCAAC 197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 ATGTAGAAGCTGATATAATATGCACACTCAGACTCTGTGGTTGCATAATGATATACCAAC 677 Query: 196 TTCTCCCATTAGACAAATTGACGCTTAGAC-AACTTAATAACACATTGCGGACGTTTTTA 138 |||||||||||| | | ||| | | || || | || ||| | | | | | Sbjct: 678 TTCTCCCATTAGGTAGCTAGACAGT-ATACCAAGATGTGAATTCATAG-GAATAGTAATC 735 Query: 137 ATGTACTGAATTAACGCCG-AATTGAATTCGATTTGGTGTATC-GAGATTG 89 || || ||| || | | || || || | ||| || | | || |||| Sbjct: 736 AT-TA-TGATTTTTCTATGTAAGTGG-TTAGTTTT--TGAAGCTGA-ATTG 780 >At3g61260 68416.t06335 DNA-binding family protein / remorin family protein similar to DNA-binding protein gi|601843 [Arabidopsis thaliana], remorin [Solanum tuberosum] GI:1881585; contains Pfam profiles PF03763: Remorin C-terminal region, PF03766: Remorin N-terminal region Length = 1538 Minus Strand HSPs: Score = 153 (29.0 bits), Expect = 0.42, P = 0.34 Identities = 71/111 (63%), Positives = 71/111 (63%), Strand = Minus / Plus
Border_2 (51792_LB2U)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATGA
CGGCGTTAATTTGTCTCCAATTTGTTTAGACAGTATACCAAGATGTGAATTCATAGGAATAGTAATCATTATGATTTTTCTATGTAAGTGGTTAGTTTTT
GAAGCTGAATTGTCTTGTTCTTCTTTCCATTGCCTCCATGGGTGTCGTCCCATATGAGTCGGTTTCAGCTTCTTTTGAGAGTAATAATCACAGATTTATT
TTCATGAGCCTGGCCTTGTTTTGTTATTTCATTTTGCTATATTATGTGGATTTTTACAATGGGCATGTGAACTAACTATAGAGTGTTTACAGACCTGAAC
TATACAAGTCTAGGGTGTTGGAGCTTAATGCAAGTGATGACAGAGGTATTAATGTTGTTCGGACTAAGATCAAGGATTTTGCTGCTGTTGCTGTTGGGTC
TAATCATCGTCAAAGGTGTCGTACTTTTTATTAAGTTTTTTTT
| Start of BLAST Alignment: | NT 647 / Intron 3 of 11 |
| First 15 bp Perfect Match: | NT 663 / Intron 3 of 11 |
BLAST Details: Query Sequence: 51792_LB2U Length: (643 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g21690 68414.t02433 replication factor C 37 kDa, putat... 2053 1.7e-88 1 At1g10780 68414.t01098 F-box family protein ; similar to... 227 0.045 1 At1g10450 68414.t01050 paired amphipathic helix repeat-co... 206 0.41 1 At3g10850 68416.t01168 hydroxyacylglutathione hydrolase, ... 193 0.86 1 >At1g21690 68414.t02433 replication factor C 37 kDa, putative Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit (Replication factor C 37 kDa subunit, A1 37 kDa subunit, RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains Pfam domain, PF00004: ATPase, AAA family Length = 2962 Plus Strand HSPs: Score = 2053 (314.1 bits), Expect = 1.7e-88, P = 1.7e-88 Identities = 419/425 (98%), Positives = 419/425 (98%), Strand = Plus / Plus Query: 214 TCTCCAATTTGTT---TAGACAGTATACCAAGATGTGAATTCATAGGAATAGTAATCATT 270 ||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 679 TCTCCCATTAGGTAGCTAGACAGTATACCAAGATGTGAATTCATAGGAATAGTAATCATT 738 Query: 271 ATGATTTTTCTATGTAAGTGGTTAGTTTTTGAAGCTGAATTGTCTTGTTCTTCTTTCCAT 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 739 ATGATTTTTCTATGTAAGTGGTTAGTTTTTGAAGCTGAATTGTCTTGTTCTTCTTTCCAT 798 Query: 331 TGCCTCCATGGGTGTCGTCCCATATGAGTCGGTTTCAGCTTCTTTTGAGAGTAATAATCA 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 799 TGCCTCCATGGGTGTCGTCCCATATGAGTCGGTTTCAGCTTCTTTTGAGAGTAATAATCA 858 Query: 391 CAGATTTATTTTCATGAGCCTGGCCTTGTTTTGTTATTTCATTTTGCTATATTATGTGGA 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 859 CAGATTTATTTTCATGAGCCTGGCCTTGTTTTGTTATTTCATTTTGCTATATTATGTGGA 918 Query: 451 TTTTTACAATGGGCATGTGAACTAACTATAGAGTGTTTACAGACCTGAACTATACAAGTC 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 919 TTTTTACAATGGGCATGTGAACTAACTATAGAGTGTTTACAGACCTGAACTATACAAGTC 978 Query: 511 TAGGGTGTTGGAGCTTAATGCAAGTGATGACAGAGGTATTAATGTTGTTCGGACTAAGAT 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 979 TAGGGTGTTGGAGCTTAATGCAAGTGATGACAGAGGTATTAATGTTGTTCGGACTAAGAT 1038 Query: 571 CAAGGATTTTGCTGCTGTTGCTGTTGGGTCTAATCATCGTCAAAGGTGTCGTACTTTTTA 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1039 CAAGGATTTTGCTGCTGTTGCTGTTGGGTCTAATCATCGTCAAAGGTGTCGTACTTTTTA 1098 Query: 631 TTAAG 635 ||||| Sbjct: 1099 TTAAG 1103 >At1g10780 68414.t01098 F-box family protein ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 Length = 2332 Plus Strand HSPs: Score = 227 (40.1 bits), Expect = 0.046, P = 0.045 Identities = 229/403 (56%), Positives = 229/403 (56%), Strand = Plus / Plus