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At3g29290 SYNGENTA 52361

Genomic Sequence (from TAIR)

ctgcaattacaccaattcctttacaacaacatcattcaacaaaaaagaaacagtttcgaaataaagccagaaacttttacCCATtgttgcttgagagaga
gagaaatcgattctttaattcactaccaaagtgttcggctttagggtgttttcaactacttaaaatcgagaacgttttaagatccttaagcgacgtcgtt
tctcttttcaaagcttaaaactacgtcgtttactctctgtctctgatgtatcttcttctccttcctcagccacagaacaagctttgattcatcatttctg
cgaaaagaacagagctttggcttggtttcgtgtcttaggtactggttcttacgtagcttatgttctttgtttaaggaaatttaggggttgtttgcttaga
cttgaagtgggtattactaaagttgtcaactttttgttgaataggaaatggtttctcagatttcgtctgaattatgctaaaagatcaagttctctctgct
cggtgttgaaattggaggtgttagagattgctgcgtttagctcttcactgtattatcATGGGAGCTGTCTGGTTGAGTCATGTCTCTCAATTGGTTTGTG
GATGTTATTTAATTGAGCAGAGCTCTTGTGTTTTGAGAACTTTTCATTGGTCTTTGAGTCACTCATTGAACTTTACATTGACCATGAAGCCTAAACGAAG
GCGTCTAGGTGTAAAAATGGAGTCTTTTTCTTTGGCAACACCAAACATGTGTTTCAGGAAGGTGAGTAGTGAATTAGACAGTTCTTTCAACGGTGAAAAT
GTGGTTTGTGGTTTGGAACTGGAGGAGAAGACTGCAGGGGATAGGAATAGGATACATTTTCTAGAGGAGCGGAACGAAGAAACTTTATCGAAGAGGCTTC
GGAAACTTAGCAGGTTGGATAAAGTCAGAAGCGCATTGGAGTTGTTTGATTCTATGAGATTCTTGGGTTTACAACCTAATGCTCATGCCTGTAACTCTTT
TCTCTCGTGCCTCTTGAGGAATGGAGATATTCAGAAAGCTTTTACCGTCTTTGAGTTCATGAGGAAAAAGGAGAATGTTACAGGGCACACGTATAGTTTG
ATGTTGAAAGCTGTTGCAGAAGTTAAGGGTTGCGAGTCTGCATTAAGAATGTTTAGAGAACTAGAAAGGGAGCCGAAACGTAGGAGTTGTTTTGATGTGG
TTCTATATAATACTGCGATTTCTCTATGTGGACGGATAAATAATGTGTATGAGACAGAGAGAATATGGAGAGTTATGAAAGGTGATGGTCATATTGGAAC
AGAGATTACATATTCTCTGCTTGTTAGCATTTTTGTTCGGTGTGGGAGAAGTGAATTGGCCCTTGATGTGTATGATGAGATGGTTAACAACAAGATATCT
CTGAGAGAGGATGCAATGTATGCGATGATAAGTGCGTGTACAAAGGA◄GGAAA►AATGGGA►TTTGGCCTTAAAGATATTTCAGAGTATGTTAAAGAAAG
GGATGAAGCCTAATCT◄TGTAGCTTGCAATACTTTGATAAACTCGCTGGGAAAGGCGGGTAAAGTCGGATTGGTGTTTAAGGTTTACAGTGTTTTAAAAT
CCTTGGGGCATAAACCAGACGAGTACACGTGGAATGCGCTGCTCACGGCTTTATACAAAGCAAACCGATATGAAGATGTTCTTCAGCTGTTTGATATGAT
AAGAAGCGAAAACCTGTGTTGTCTAAATGAATATTTGTACAACACAGCTATGGTGTCATGCCAAAAGCTTGGTTATTGGGAGAAAGCTGTGAAGCTTTTG
TATGAAATGGAAGGTTCGGGTTTAACAGTTTCAACTTCATCATATAATCTAGTGATAAGCGCTTGCGAAAAATCAAGAAAATCGAAAGTTGCATTGCTAG
TATATGAGCACATGGCTCAAAGGGATTGTAAGCCAAACACGTTTACTTATCTTTCGCTTGTAAGGAGTTGTATTTGGGGTTCCCTTTGGGACGAGGTTGA
AGATATCCTTAAGgtacgagttttctttatgtttgttactcaaatgtgtggtggtttggaagaggtagtctaatgttgtttgttttcttgaacagAAAGT
GGAACCCGATGTATCGCTTTACAATGCAGCTATACATGGGATGTGTTTGAGACGCGAGTTCAAGTTTGCAAAAGAGCTGTATGTCAAAATGAGAGAGATG
GGTTTAGAACCGGATGGCAAAACCCGAGCTATGATGTTACAGAATTTGAAGAAACACCAAAAATAAggttataattgtacgttatctactcatacttatt
tgcatttgccaactgccaagtatcataagtcaaaattcactaaaacaattggtctgtaattaggcattgtatgcatactcactgtgatgaatgttctggt
gatggtgatgtttgtttgataaatgaggttgtggacatagatcaaaggttttggcgatgacatagctcgtgcccagtttctaacattggatacagatgtt
tggatccatagatataaggctgctgccccggcactacactagaaagctagatctcattctcaggcagtgaggtttgtgtgctgataattttgtcctcccg
tcatggcacgctcaagtagcgattttgaaacactagaaaacagaatgtgaactgaatcagtgtaaaactgtaaaagaaaacatgaatctgtctttctttt
gaaaggatgttttgttcaagaaacagatgataacttttgtcacaagcaaatcaagtttaatttaagcttcttggcttatgcaacacagatgctaatcctc
ctaa

Border_1 (52361_LB1D)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTAAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTGTCCTTTGTACACGC
ACTTATCATCGCATACATTGCATCCTCTCTCAGAGATATCTTGTTGTTAACCATCTCATCATACACATCAAGGGCCAATTCACTTCTCCCACACCGAACA
AAAATGCTAACAAGCAGAGAATATGTAATCTCTGTTCCAATATGACCATCACCTTTCATAACTCTCCATATTCTCTCTGTCTCATACACATTATTTATCC
GTCCACATAGAGAAATCGCAGTATTATATAGAACCACATCAAAACAACTCCTAYGTTTCGGGCTCCCTTTCTAGTCTCTAAACATTCTTAATGCAGACTC
G

Start of BLAST Alignment:	NT 956 / Exon 1 of 2
First 15 bp Perfect Match:	NT 890 / Exon 1 of 2

BLAST Details:
Query Sequence: 52361_LB1D 
Length: (501 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At3g29290 68416.t03343 pentatricopeptide (PPR) repeat-con...  1601  6.1e-68   1
At1g08280 68414.t00813 glycosyl transferase family 29 pro...   205  0.22      1
At5g09690 68418.t01016 magnesium transporter CorA-like fa...   203  0.30      1
At1g09680 68414.t00966 pentatricopeptide (PPR) repeat-con...   194  0.61      1


>At3g29290 68416.t03343 pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profile PF01535: PPR repeat
        Length = 2169

  Minus Strand HSPs:

 Score = 1601 (246.3 bits), Expect = 6.1e-68, P = 6.1e-68
 Identities = 358/390 (91%), Positives = 359/390 (92%), Strand = Minus / Plus

Query:   501 CGAGTCTGCATTAAGAATGTTTAGAGA-CTAGAAAGGGAGCCCGAAACRTAGGAGTTGTT 443
             ||||||||||||||||||||||||||| |||||||||||||| |||||+|||||||||||
Sbjct:   886 CGAGTCTGCATTAAGAATGTTTAGAGAACTAGAAAGGGAGCC-GAAACGTAGGAGTTGTT 944

Query:   442 TTGATGTGGTTCTATATAATACTGCGATTTCTCTATGTGGACGGATAAATAATGTGTATG 383
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   945 TTGATGTGGTTCTATATAATACTGCGATTTCTCTATGTGGACGGATAAATAATGTGTATG 1004

Query:   382 AGACAGAGAGAATATGGAGAGTTATGAAAGGTGATGGTCATATTGGAACAGAGATTACAT 323
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1005 AGACAGAGAGAATATGGAGAGTTATGAAAGGTGATGGTCATATTGGAACAGAGATTACAT 1064

Query:   322 ATTCTCTGCTTGTTAGCATTTTTGTTCGGTGTGGGAGAAGTGAATTGGCCCTTGATGTGT 263
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1065 ATTCTCTGCTTGTTAGCATTTTTGTTCGGTGTGGGAGAAGTGAATTGGCCCTTGATGTGT 1124

Query:   262 ATGATGAGATGGTTAACAACAAGATATCTCTGAGAGAGGATGCAATGTATGCGATGATAA 203
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1125 ATGATGAGATGGTTAACAACAAGATATCTCTGAGAGAGGATGCAATGTATGCGATGATAA 1184

Query:   202 GTGCGTGTACAAAGGACAACAAATTGACGCTTAGACAACTTAATAACACATTGCGGACGT 143
             ||||||||||||||||  | |||| |  | || | |  |||||  | | ||| | || ||
Sbjct:  1185 GTGCGTGTACAAAGGAGGAAAAATGG--GATTTGGC--CTTAA--AGATATTTCAGA-GT 1237

Query:   142 TT-TTAATGTACTGAATTAACGCCGAATTT 114
              | |||| | |  | || || ||| ||| |
Sbjct:  1238 ATGTTAAAGAAAGGGATGAA-GCCTAATCT 1266


>At1g08280 68414.t00813 glycosyl transferase family 29 protein /
           sialyltransferase family protein contains Pfam profile: PF00777
           sialyltransferase (Glycosyltransferase family 29)
        Length = 1446

  Minus Strand HSPs:

 Score = 205 (36.8 bits), Expect = 0.25, P = 0.22
 Identities = 157/272 (57%), Positives = 157/272 (57%), Strand = Minus / Plus

Border_2 (52361_LB2U)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATAAAG
ATATCTTGTAGCTTATCAACAATGTAGCGTAAATTGATGCAATGTATGCAATTTGTTTGGCCTTAAAGATATTTCAGAGTATGTTAAAGAAAGGGATGAA
GCCTAATCTTGTAGCTTGCAATACTTTGATAAACTCGCTGGGAAAGGCGGGTAAAGTCGGATTGGTGTTTAAGGTTTACAGTGTTTTAAAATCCTTGGGG
CATAAACCAGACGAGTACACGTGGAATGCGCTGCTCACGGCTTTATACAAAGCAAACCGATATGAAGATGTTCTTCAGCTGTTTGATATGATAAGAAGCG
AAAACCTGTGTTGTCTAAATGAATATTTGTACAACACAGCTATGGTGTCATGCCAAAAGCTTGGTTATTGGGAGAAAGCTGTGAAGCTTTTGTATGAAAT
GGAAGGTTCGGGTTTAACAGTTTCAACTTCATCATATAATCTAGTGATAAGCGCTTGCGAAAAATCAAGAAAATCGAAAGTTGCATTGCTAGTATATGAG
CACATGGCTCAWAGGGATTGTAAGCCAAACACGTTTACTTATCTTTCGCTTGTAAGGAGTTGTATTTGGGGTTCCCTTTGGGACGAGGTTGAAGATATCC
TTAAGGMCGAGTTTTCTTTATGTTTGGTACTCAAATGTGT

Start of BLAST Alignment:	NT 895 / Exon 1 of 2
First 15 bp Perfect Match:	NT 902 / Exon 1 of 2

BLAST Details:
Query Sequence: 52361_LB2U 
Length: (840 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At3g29290 68416.t03343 pentatricopeptide (PPR) repeat-con...  2900  1.3e-126  1
At1g09680 68414.t00966 pentatricopeptide (PPR) repeat-con...   347  1.4e-07   1
At5g46580 68418.t05334 pentatricopeptide (PPR) repeat-con...   341  2.9e-07   1
At5g12100 68418.t01295 pentatricopeptide (PPR) repeat-con...   268  0.0010    1


>At3g29290 68416.t03343 pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profile PF01535: PPR repeat
        Length = 2169

  Plus Strand HSPs:

 Score = 2900 (441.2 bits), Expect = 1.3e-126, P = 1.3e-126
 Identities = 586/593 (98%), Positives = 588/593 (99%), Strand = Plus / Plus

Query:   250 AATTTG-TTTGGCCTTAAAGATATTTCAGAGTATGTTAAAGAAAGGGATGAAGCCTAATC 308
             |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1206 AATGGGATTTGGCCTTAAAGATATTTCAGAGTATGTTAAAGAAAGGGATGAAGCCTAATC 1265

Query:   309 TTGTAGCTTGCAATACTTTGATAAACTCGCTGGGAAAGGCGGGTAAAGTCGGATTGGTGT 368
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1266 TTGTAGCTTGCAATACTTTGATAAACTCGCTGGGAAAGGCGGGTAAAGTCGGATTGGTGT 1325

Query:   369 TTAAGGTTTACAGTGTTTTAAAATCCTTGGGGCATAAACCAGACGAGTACACGTGGAATG 428
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1326 TTAAGGTTTACAGTGTTTTAAAATCCTTGGGGCATAAACCAGACGAGTACACGTGGAATG 1385

Query:   429 CGCTGCTCACGGCTTTATACAAAGCAAACCGATATGAAGATGTTCTTCAGCTGTTTGATA 488
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1386 CGCTGCTCACGGCTTTATACAAAGCAAACCGATATGAAGATGTTCTTCAGCTGTTTGATA 1445

Query:   489 TGATAAGAAGCGAAAACCTGTGTTGTCTAAATGAATATTTGTACAACACAGCTATGGTGT 548
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1446 TGATAAGAAGCGAAAACCTGTGTTGTCTAAATGAATATTTGTACAACACAGCTATGGTGT 1505

Query:   549 CATGCCAAAAGCTTGGTTATTGGGAGAAAGCTGTGAAGCTTTTGTATGAAATGGAAGGTT 608
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1506 CATGCCAAAAGCTTGGTTATTGGGAGAAAGCTGTGAAGCTTTTGTATGAAATGGAAGGTT 1565

Query:   609 CGGGTTTAACAGTTTCAACTTCATCATATAATCTAGTGATAAGCGCTTGCGAAAAATCAA 668
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1566 CGGGTTTAACAGTTTCAACTTCATCATATAATCTAGTGATAAGCGCTTGCGAAAAATCAA 1625

Query:   669 GAAAATCGAAAGTTGCATTGCTAGTATATGAGCACATGGCTCAWAGGGATTGTAAGCCAA 728
             |||||||||||||||||||||||||||||||||||||||||||+||||||||||||||||
Sbjct:  1626 GAAAATCGAAAGTTGCATTGCTAGTATATGAGCACATGGCTCAAAGGGATTGTAAGCCAA 1685

Query:   729 ACACGTTTACTTATCTTTCGCTTGTAAGGAGTTGTATTTGGGGTTCCCTTTGGGACGAGG 788
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1686 ACACGTTTACTTATCTTTCGCTTGTAAGGAGTTGTATTTGGGGTTCCCTTTGGGACGAGG 1745

Query:   789 TTGAAGATATCCTTAAGG-MCGAGTTTTCTTTATGTTTGGTACTCAAATGTGT 840
             |||||||||||||||||| +||||||||||||||||||| |||||||||||||
Sbjct:  1746 TTGAAGATATCCTTAAGGTACGAGTTTTCTTTATGTTTGTTACTCAAATGTGT 1798


>At1g09680 68414.t00966 pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profile PF01535: PPR repeat
        Length = 1824

  Plus Strand HSPs:

 Score = 347 (58.1 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 332/585 (56%), Positives = 333/585 (56%), Strand = Plus / Plus