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At5g24400 SYNGENTA 52949

Genomic Sequence (from TAIR)

tttggttactttggttagttttcagttagtctttaggttagttcaagaatttttcatgtatttcgactgttagaaggataatttgtaaccgagccgaaca
ttaccgcggttctaaaccggttcttcactctattatccgaatcaaaaggtatccgaaccggaaacaaaccaaattttgttcggttcttatatgaatccta
aacatcttatccaaatcataaaactgaaccagaacggaaccaaagatctagatctacacattagttcataagctggaccagactcataaacaaactaaca
aaacacaggtttggtcggagaaggctttattaatccacttgtcctcctctcagactctacaaagtcaaagttgttcactttacctataaaaacgctctct
cactttcttttcaATGGCTTCTTCTTCTTGTTTCCTTCGCTCGATTCTCTTCTCTTCTCCTACTAACCTTCGTTCAAATCACCATCTCCCCACTTTCTTC
CCCAAGAATTATCTCATTTGCTCTCATTCCACTTCTTCTCGCTTCGAATCGCTCTCGGTTTCATCGATCGGAACTGGATCTACCAAGAAATCATCCGATA
CTCGGAGAAAGGTAAAGAGCATGGCTACGACAAATATAGGAAAGGAGGAGAAGAAAAGAGTCGAGATTTATGATCTCGAAGAGAATTTAGTGATTGATTT
GGCTAAATTCACAGCAGATCTCTCCGATAAGTTTTGTAAAGAGAGAGGCGCTTTCACCGTCGTTGTCTCCGGTGGCTCTCTCATCAAATCACTCCGgtga
gtgttcttatctctcttttgaattttgattcgaaaccatgagatttaag►ggttt►gcaacgttttgatttagggtttagcatctgtgaattagagattt
gaatctggcttgtgtattgaggagattcacttctttggtagttatggctgatcaagaacatagctttttcacattttgacacactttattgataatgttt
cagGAAATTAGTAGAATCTCCTTACGTTGATTCTATAGATTGGGCAAGGTGGCATTTTTTCTGGGTTGACGAGAGAGTTGTTCCCAAGAATCACGATGAT
AGCAACTATAAACTCGCTTATGATAGTTTTCTATCCAAGgtattgaacacgttctcttcaggttaagagtcagctacaacttcttcacagtctaatcatt
tctctttagGTACCAATTCCGCCTGGAAATGTATATGCAATCAACGAAGCCCTCTCCGCTGAGGCTGCAGCGGATGATTACGAGACCTGCCTCAAACATT
TGGTCAACACCAACATTCTCCGTGTATCTGAATCAACTGGCTTTCCCAAATTTGATCTCATGCTTCTAGGTATGGGACCTGATGGTCATGTGGCATCATT
ATTCCCTGGGCATGGTCTCTGCAACGAGAGCAAGAAATGGGTAGTTTCAATCTCTGACTCTCCAAAACCACCGTCTGAGAGAATCACCTTCACGTTCCCG
GTCATCAACTCATCTGCACATGTAGCTCTAGTTGTTTGCGGTTCTGGGAAAGCTGAAGCTGTGGAGGCAGCTTTAAAGAAGACTGGGAATGTACCACCTG
CTGGTTCTGTTTCTGCTGAAGACGAGTTGGTTTGGTTCCTGGACAAACCAGCATCTTCCAAGCTCTAAaaacaggtggtatgcttcccattccagtgaac
ttaccaatgtgactagtccggtttagtttttggattttgactctttggttctctccatttatgttgtgggaagagactgttgtgataaaagcgtgtactt
tacatggaaataatgaactaatcaatggtttctctgatttgttttggtgtattttggttaaaatctatcggaaccaacactctccaattgttgttttgac
taaagactataactgattgtgtagtatgctccggatcggactaaagtcgaatttgtccgcacttacttcaccattcaccattgcttgtttttattccact
cccaaaaacttcatactaatagtaacaatatagtgcatacttttgtctgttccatactttagtctgacgttttgcttactaataagctaagcgttactaa
aa

Border_1 (52949_LBD)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATC:AATTC:ATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGATTCGCAACGTTTTGAT
TTAGGGTTTAGCATCTGTGAATTAGAGATTTGAATCTGGCTTGTGTATTTAGGAGATTCACTTCTTTGGTAGTTATGGCTGATCAAGAACATAGCTTTTT
CACATTTTGACACACTTTATTGATAATGTTTCAGGAAATTAGTAGAATCTCCTTACGTTGATTCTATAGATTGGGCAAGGTGGCATTTTTTCTGGGTTGA
CGAGAGAGTTGTTCCCAAGAATCACGATGATAGCAACTATAAACTCGCTTATGATAGTTTTCTATCCAAGGTATTGAACACGTTCTCTTCAGGTTAAGAG
TCAGCTACAACTTCTTCACAGTCTAATCATTTCTCTTTAGGTACCAATTCCGCCTGGAAATGTATATGCAATCAACGAAGCCCTCTCCGCTGAGGCTGCA
GCGGATGATTACGAGACCTGCCTCAAACATTTGGTCAACACCAACATTCTCCGTGTATCTGAATCAACTGGCTTTCCCAAATTTGATCTCATGCTTCTAG
GTATGGGACCTGATGGTCATGTGGCATCATTATTCCCTGGGCATGGTCTCTGTCC

Start of BLAST Alignment:	NT 436 / Intron 1 of 2
First 15 bp Perfect Match:	NT 441 / Intron 1 of 2

BLAST Details:
Query Sequence: 52949_LBD 
Length: (753 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At5g24400 68418.t02609 glucosamine/galactosamine-6-phosph...  2823  5.6e-123  1
At3g49360 68416.t05012 glucosamine/galactosamine-6-phosph...   456  1.4e-29   2
At5g24410 68418.t02610 glucosamine/galactosamine-6-phosph...   369  5.8e-09   1
At1g13700 68414.t01441 glucosamine/galactosamine-6-phosph...   355  3.1e-08   1


>At5g24400 68418.t02609 glucosamine/galactosamine-6-phosphate isomerase family
           protein low similarity to SP|O95336 6-phosphogluconolactonase (EC
           3.1.1.31) (6PGL) {Homo sapiens}; contains Pfam profile PF01182:
           Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase
        Length = 1523

  Plus Strand HSPs:

 Score = 2823 (429.6 bits), Expect = 5.6e-123, P = 5.6e-123
 Identities = 567/570 (99%), Positives = 567/570 (99%), Strand = Plus / Plus

Query:   181 GATTCGCAACGTTTTGATTTAGGGTTTAGCATCTGTGAATTAGAGATTTGAATCTGGCTT 240
             | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   490 GGTTTGCAACGTTTTGATTTAGGGTTTAGCATCTGTGAATTAGAGATTTGAATCTGGCTT 549

Query:   241 GTGTATTTAGGAGATTCACTTCTTTGGTAGTTATGGCTGATCAAGAACATAGCTTTTTCA 300
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   550 GTGTATTGAGGAGATTCACTTCTTTGGTAGTTATGGCTGATCAAGAACATAGCTTTTTCA 609

Query:   301 CATTTTGACACACTTTATTGATAATGTTTCAGGAAATTAGTAGAATCTCCTTACGTTGAT 360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   610 CATTTTGACACACTTTATTGATAATGTTTCAGGAAATTAGTAGAATCTCCTTACGTTGAT 669

Query:   361 TCTATAGATTGGGCAAGGTGGCATTTTTTCTGGGTTGACGAGAGAGTTGTTCCCAAGAAT 420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   670 TCTATAGATTGGGCAAGGTGGCATTTTTTCTGGGTTGACGAGAGAGTTGTTCCCAAGAAT 729

Query:   421 CACGATGATAGCAACTATAAACTCGCTTATGATAGTTTTCTATCCAAGGTATTGAACACG 480
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   730 CACGATGATAGCAACTATAAACTCGCTTATGATAGTTTTCTATCCAAGGTATTGAACACG 789

Query:   481 TTCTCTTCAGGTTAAGAGTCAGCTACAACTTCTTCACAGTCTAATCATTTCTCTTTAGGT 540
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   790 TTCTCTTCAGGTTAAGAGTCAGCTACAACTTCTTCACAGTCTAATCATTTCTCTTTAGGT 849

Query:   541 ACCAATTCCGCCTGGAAATGTATATGCAATCAACGAAGCCCTCTCCGCTGAGGCTGCAGC 600
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   850 ACCAATTCCGCCTGGAAATGTATATGCAATCAACGAAGCCCTCTCCGCTGAGGCTGCAGC 909

Query:   601 GGATGATTACGAGACCTGCCTCAAACATTTGGTCAACACCAACATTCTCCGTGTATCTGA 660
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   910 GGATGATTACGAGACCTGCCTCAAACATTTGGTCAACACCAACATTCTCCGTGTATCTGA 969

Query:   661 ATCAACTGGCTTTCCCAAATTTGATCTCATGCTTCTAGGTATGGGACCTGATGGTCATGT 720
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   970 ATCAACTGGCTTTCCCAAATTTGATCTCATGCTTCTAGGTATGGGACCTGATGGTCATGT 1029

Query:   721 GGCATCATTATTCCCTGGGCATGGTCTCTG 750
             ||||||||||||||||||||||||||||||
Sbjct:  1030 GGCATCATTATTCCCTGGGCATGGTCTCTG 1059


>At3g49360 68416.t05012 glucosamine/galactosamine-6-phosphate isomerase family
           protein similar to SP|O95336 6-phosphogluconolactonase (EC 3.1.1.31)
           (6PGL) {Homo sapiens}; contains Pfam profile PF01182:
           Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase
        Length = 1353

  Plus Strand HSPs:

 Score = 456 (74.5 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 134/183 (73%), Positives = 134/183 (73%), Strand = Plus / Plus