At1g67440 SYNGENTA 54334
Genomic Sequence (from TAIR)
TAGAGATGTTATCGGAACCCTAGACAAAATCTCTTCTACCAAATCATTCGGAAGATCAGACATCATCATCGTCATtttttcaaatgaaaaattagggttg aactatcacgtcttttccacacttttaagatttattctgagattgttcacagcataatatggattaatcttctaggaagccttatattgtgtaacagatt aattgtacagatgcctttcatttgcagacttattaaagatgaaatgattaataagagcagatttgttctttttaatcatcagtcatcatcaatgtcaata ttaataagccatcaaatcaatgaaagacttggaaaaatatctcaaacttacttacaccttcccacacacatttacggtcgattatatatgcaatagatgg gccctaattttgggcccataacacttatcacaaaaggcccatcactttaaatcttcttcataattcactgctctcttcctcactacacagttttctattc ttctagaatttgcttatgcagaca◄ttttca◄atttcactcctccgtcactcttctccgttcctccgtcacaccgcgatttttcacggcggagttggagt tagattcaaattccttcgcagcttttctcctctctcagcaagacgagataatcc►cgatgtctccagaaaaccccaaccgagcaaaaatATGCTCAGAGC GAAGCACATCGGTAAAAATTACTCCTCCTCCTTGTCACCAGTTCTCTCGCCGGAGCATAAACCTTCGCTCTTAGAGTCTCAAGCTATTGGTACTGTCGCA ACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGATGTAGCTAATTCTGTGACGAGTGATGATGATAATGATTCTTCAAAGACTGGTGTTGAATTGC TTTGTGTGGTGAGAGCTGTGTTGAAGAAAATACGAAGGAGAGTTTTAGTTGGAGATAAGGTTCTTGTTGGATCTATTGATTGGGTTGATAGAAGAGGAAT GATTGAGAATGTGTTTCATCGACGTTCGGAGATTTTGGATCCACCTGTTGCGAACGTTGATCATTTGCTTGTTCTTTTCTCTTTGGATCAACCGAAACTT GAGCCGTTTACTCTTACTAGGTTCTTGGTGGAAGCTGAATCTACTCGTATTCCATTAACACTTGCTTTGAATAAAACTGAACTCATTAGTGAAGAGgtaa ggaggatgaagaaattgtattttagatcactttgttggtttagggattgattagaatcataaacttgtttacagGAATTGGAAACTTGGAAGATAAGGTT GCGTGGATGGAACTATGAACCATTGTTTTGTAGTGTGGGAACTAAAGATGGACTTGATGATATTGCGTTTGTTCTGAGAGATCAGACTTCTGTGATTGTT GGACCTAGTGGTGTTGGAAAGTCGAGTTTAATCAACGTATTGAGGAGTAATCATGGTGGTGGTGTGGTGGAAGATGAGAATTGGTTTGAGCCTgtaaggt tcttttgtgttatttcattttacagcttaagttttgtttgccagattcttatgagttgagcttttgtgatattcagATGTTAGGTAATAAGTGGTTTGAT GATCAGCGAGTAGGGGAAGTTTCGAGTAGAAGTGGTAGAGGTAAACATACAACACGAAATGTATCGCTACTGCCGGTTTCTGAAGGTGGTTACCTCGCTG ATACTCCTGGCTTTAACCAGCCTAGTTTGCTGAAAGTAACGAAGCATTCACTAGCTCACTGTTTTCCTGAGgtttgttctttgtacccttttgcttgtgc caatctcccttattggctgactgtgacgatgtgttactttttaattgtttcttttagATACGGAACATGATTGAGAGCGAAAAATGTGGATTCAGAGACT GCTTGCATATTGGGGAACCAGGATGTGTTGTGAAAGGTGACTGGGAAAGGTATCCTTACTACTTACAATTGCTTGATGAGATCAGAATCAGGGAAGAATT TCAGCTTAGGACTTTTGGAACCAAAAGGGAAGATGATGTTAGgtattgttgggatttctcctgaaagaacagctttatttttagattgagattggtcgca gtcactaatgttgtttactttggaatgatacttgacacagGTACAAGGTGGGAGACATGGGTGTGAAACATGCTGAACCACGGTTAATGCCTAAGAAGCA TAGGAGAGAGTCAAGGAAGAAAACGAAACAGACAATGATCAGTGAGCTGGATGAGTTCGAAGATGAAGACAGTGATTTGTACATAGAGAACGACCCAATC GTCCAAGCCATTGAGAATGAGAATAAAAGACAATGAgagaactcaagtttccactataactaagtcacatgatgtaaaagattgtacagatctttttaag ttctcagctcttttgtttgtctgaattattgactaatcgaactatcgaactaaccaaaacttgcagaaccatgatcactgatttcataagtcatagaacg aaaatttccaagataaatctatccattgtcttacaaaacgattcgagctaaagaaaaaagagaacaaaatctcgttcaagaacacaagggacatgaaaat aaagaaagaaagcTTAAGCTGCTGATTTCTTGGACTTGGCAGCCAACTGAGTCTCCGGctacaattatcaaaaacaaatacgaaatgagaacactgttgt ta
Border_1 (54334_LBD)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTCTGCATAAGCAAATTC
TAGAAGAATAGAAAACTGTGTAGTGAGGAAGAGAGCAGTGAATTATGAAGAAGATTTAAAGTGATGGGCCTTTTGTGATAAGTGTTATGGGCCCAAAATT
AGGGCCCATCTATTGCATATATAATCGACCGTAAATGTGTGTGGGAAGGTGTAAGTAAGTTTGAGATATTTTTCCAAGTCTTTCATTGATTTGATGGCTT
ATTAATATTGACATTGATGATGACTGATGATTAAAAAGAACAAATCTGCTCTTATTAATCATTTCATCTTTAATAAGTCTGCAAATGAAAGGCATCTGTA
CAATTAATCTGTTACACAATATAAGGCTTCCTAGAAGATTAATCCATATTATGCTGTGAACAATCTCAGAATAAATCTTAAAAGTGTGGAAAAGACGTGA
TAGTTCAACCCTAATTTTTCATTTGAAAAAATGACGATGATGATGTCTGATCTTCCGAATGATTTGGTAGAAGAGATTTTGTCTAGGGTTCCGATAACAT
CTCTAGGAGCAGTGAGATCTACTTGCAAACGATGGAACGGTTTATCCAAAGATCGTATTGTATGTAAAGGAGATGCAAATCAACAGTTTACAGGGTTCAC
GAGATATGTGAACGAATCTACGGTTTGTTCAATGAGACTTGATCTTAATAAATCCAAA
| Start of BLAST Alignment: | <162/ 5’ UTR |
| First 15 bp Perfect Match: | <162 / 5’ UTR |
BLAST Details: Query Sequence: 54334_LBD Border #1 Length: (858 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N T1F15 51036 3378 2.0e-146 1 MPN9 60486 810 2.1e-30 1 MAL21 60540 760 3.8e-28 1 T32N4 67065 732 7.0e-27 1 T1F15 51036 Length = 55,721 Minus Strand HSPs: Score = 3378 (512.9 bits), Expect = 2.0e-146, P = 2.0e-146 Identities = 680/684 (99%), Positives = 680/684 (99%), Strand = Minus / Plus Query: 858 TTTGGATTT-ATTAAGATCAAGTCTCATTGAACAAACCGTAGATTCGTTCACATATCTCG 800 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 40997 TTTGGATTTCATTAAGATCAAGTCTCATTGAACAAACCGTAGATTCGTTCACATATCTCG 41056 Query: 799 TGAACCCTGTAAACTGTTGATTTGCATCTCCTTTACATACAATACGATCTTTGGATAAAC 740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41057 TGAACCCTGTAAACTGTTGATTTGCATCTCCTTTACATACAATACGATCTTTGGATAAAC 41116 Query: 739 CGTTCCATCGTTTGCAAGTAGATCTCACTGCTCCTAGAGATGTTATCGGAACCCTAGACA 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41117 CGTTCCATCGTTTGCAAGTAGATCTCACTGCTCCTAGAGATGTTATCGGAACCCTAGACA 41176 Query: 679 AAATCTCTTCTACCAAATCATTCGGAAGATCAGACATCATCATCGTCATTTTTTCAAATG 620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41177 AAATCTCTTCTACCAAATCATTCGGAAGATCAGACATCATCATCGTCATTTTTTCAAATG 41236 Query: 619 AAAAATTAGGGTTGAACTATCACGTCTTTTCCACACTTTTAAGATTTATTCTGAGATTGT 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41237 AAAAATTAGGGTTGAACTATCACGTCTTTTCCACACTTTTAAGATTTATTCTGAGATTGT 41296 Query: 559 TCACAGCATAATATGGATTAATCTTCTAGGAAGCCTTATATTGTGTAACAGATTAATTGT 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41297 TCACAGCATAATATGGATTAATCTTCTAGGAAGCCTTATATTGTGTAACAGATTAATTGT 41356 Query: 499 ACAGATGCCTTTCATTTGCAGACTTATTAAAGATGAAATGATTAATAAGAGCAGATTTGT 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41357 ACAGATGCCTTTCATTTGCAGACTTATTAAAGATGAAATGATTAATAAGAGCAGATTTGT 41416 Query: 439 TCTTTTTAATCATCAGTCATCATCAATGTCAATATTAATAAGCCATCAAATCAATGAAAG 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41417 TCTTTTTAATCATCAGTCATCATCAATGTCAATATTAATAAGCCATCAAATCAATGAAAG 41476 Query: 379 ACTTGGAAAAATATCTCAAACTTACTTACACCTTCCCACACACATTTACGGTCGATTATA 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41477 ACTTGGAAAAATATCTCAAACTTACTTACACCTTCCCACACACATTTACGGTCGATTATA 41536 Query: 319 TATGCAATAGATGGGCCCTAATTTTGGGCCCATAACACTTATCACAAAAGGCCCATCACT 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41537 TATGCAATAGATGGGCCCTAATTTTGGGCCCATAACACTTATCACAAAAGGCCCATCACT 41596 Query: 259 TTAAATCTTCTTCATAATTCACTGCTCTCTTCCTCACTACACAGTTTTCTATTCTTCTAG 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 41597 TTAAATCTTCTTCATAATTCACTGCTCTCTTCCTCACTACACAGTTTTCTATTCTTCTAG 41656 Query: 199 AATTTGCTTATGCAGACAAATTGA 176 |||||||||||||||||| || | Sbjct: 41657 AATTTGCTTATGCAGACATTTTCA 41680 Score = 459 (74.9 bits), Expect = 9.3e-14, Sum P(2) = 9.3e-14 Identities = 135/174 (77%), Positives = 135/174 (77%), Strand = Minus / Plus Query: 718 ATCTCACTGCTCCTAGAGATGTTATCGGAACCCTAGACAAAATCTCTTCTACCAAATCAT 659 |||||| ||||||||||||| |||| | ||||||||||| ||||||||||||| ||| | Sbjct: 39162 ATCTCAATGCTCCTAGAGATATTATTGAAACCCTAGACAGTATCTCTTCTACCATATCCT 39221 Query: 658 TCGGAAGATCAGACATCATCATCGTCATTTTTTCAAATGAAAAATTAGGGTT----GAAC 603 ||||||||| || |||||||||||| | || |||||||||| | |||||| || | Sbjct: 39222 CCGGAAGATCGGATATCATCATCGTCGTCTT--CAAATGAAAA-TCAGGGTTTTTTGACC 39278 Query: 602 TATCACGTCTTTTCCACACTTTTAAGATTT-ATTCTGAGAT-TGTTCACAGCAT 551 ||||| || ||| | ||| |||| ||||| ||| | | || || || | | | Sbjct: 39279 TATCATGTATTTCCTACAGTTTTTCGATTTGATTAT-ATATATGCGCATAACTT 39331 Score = 344 (57.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07 Identities = 124/172 (72%), Positives = 124/172 (72%), Strand = Minus / Plus Query: 858 TTTGGATTT-ATTAAGATCAAGTCTCATTGAACAAACCGTAGATTCGTTCACATATCTCG 800 |||||||| || |||||||| |||||||||||||||| ||||| | || |||| Sbjct: 39042 TTTGGATTCCATGAAGATCAAATCTCATTGAACAAACCTTAGATCCCTT----TATCA-- 39095 Query: 799 TGAACCCTGTAAACTGTTGATTTGCATCTCCTTTACATACAATACGATCTTTGGATAAAC 740 |||| || | ||||||||| | || ||| ||||||||| | ||| |||| |||||| Sbjct: 39096 TGAAACCAGCAAACTGTTGTCTAGCTTCTGCTTTACATATGACCCGAGCTTTAGATAAAT 39155 Query: 739 CGTTCCATCGTT-TGCAAGTAGA--TCTCACTGCT-CC-TAGAGATGTTATC 693 ||||||||| ||| |||| | | | || || |||| | || ||| Sbjct: 39156 CGTTCCATCTCAATGCTCCTAGAGATATTATTGAAACCCTAGACA-GT-ATC 39205 Score = 128 (25.3 bits), Expect = 9.3e-14, Sum P(2) = 9.3e-14 Identities = 144/256 (56%), Positives = 144/256 (56%), Strand = Minus / Plus Query: 328 TCGATTATATATGCAATAGATGGGCCCTAATTTTGGGCCCATAACACTTATCA-CAAAAG 270 |||||| || | | || ||| || ||| |||||||||||||| || || | Sbjct: 39302 TCGATTTGAT-TATA-TATATGCGCA-TAACTTTGGGCCCATAACTCTAATTTTCTTCTT 39358 Query: 269 GC--CCA-TCACTTTA-AAT-CTTCTTCATAATTCACTGCTCTCTTCCTCACTACACAGT 215 || || | | || || | ||| ||| | | || | | ||| | | | ||| | Sbjct: 39359 GCTTCCCGTTTGTGTATAACACACCTT-ATA-TGCCCTCATAT-TTCATAAGGA-ACA-T 39413 Query: 214 TTTCTATTCTTCTAGAATTTGCTT-ATGCAGACAAATTGACGCTTAGACAACTTAATAAC 156 ||| || || | | || | | ||| ||| | | |||| || ||| Sbjct: 39414 TTTGTAGAAGATTATTACAAGATTCACGAAGAGAAAGA-ATAAAGACACAAGACAA-AAC 39471 Query: 155 ACATTGCGG-ACGTTTTTAATGTACTGAATTAA-CGCCGAATTGAATTCGATTTGGTGTA 98 | | | | || | | ||| | | || || ||| || ||| | || |||| Sbjct: 39472 AAAAAGATGCACCTCTCTAAAACA-TCTATAAAACGCTCTATATAAT--GTTTATGTGTT 39528 Query: 97 TCGAGATTGGTTATGA 82 | | || || | || | Sbjct: 39529 T-GCGACTG-TGATAA 39542 MPN9 60486 Length = 81,035 Minus Strand HSPs: Score = 810 (127.6 bits), Expect = 2.1e-30, P = 2.1e-30 Identities = 342/513 (66%), Positives = 342/513 (66%), Strand = Minus / Plus
Border_2 (54334_RBU)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCGCGCAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATG
CTAGCATATGCCATGGAAACTATCAGTGCTAGCATATGCCGGTCGGGGAGCTGTTGGCGTCAATTGTGACGCTTAGACAACTATCAGTACATGCTAGCAT
ATAAACATGCATAAACTTCCGCCTTCAGTTTATGCATGCTAGCATATGCCATGGAGCGATGTCTCCAGAAAACCCCAACCGAGCAAAAATATGCTCAGAG
CGAAGCACATCGGTAAAAATTACTCCTCCTCCTTGTCACCAGTTCTCTCGCCGGAGCATAAACCTTCGCTCTTAGAGTCTCAAGCTATTGGTACTGTCGC
AACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCAAGATGTAGCTAATTCTGTGACGAGTGATGATGATAATGATTCTTCAAAGACTGGTGTTGAATTG
CTTTGTGTGGTGAGAGCTGTGTTGAAGAAAATACGAAGGAGAGTTTTAGTTGGAGATAAGGTTCTTGTTGGATCTATTGATTGGGTTGATAGAAGAGGAA
TGATTGAGAATGTGTTTCATCGACGTTCGGAGATTTTGGATCCACCTGTTGCGAACGTTGATCATTTGCTTGTTCTTTTCTCTTTGGATCAACCGAAACT
TGAGCCGTTTACTCTTACTAGGTTCTTGGTGGAAGCTGAATCTACTCGTATTCCATTA
| Start of BLAST Alignment: | NT < 34 / 5’ UTR |
| First 15 bp Perfect Match: | NT < 34 / 5’ UTR |
BLAST Details: Query Sequence: 54334_RBU Length: (858 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g67440 68414.t07035 expressed protein contains Pfam do... 2510 6.1e-109 1 At1g67460 68414.t07040 hypothetical protein contains Pfam... 870 1.8e-48 2 At5g61970 68418.t07184 signal recognition particle-relate... 210 0.46 1 At5g27500 68418.t02987 hypothetical protein hypothetical ... 196 0.89 1 >At1g67440 68414.t07035 expressed protein contains Pfam domain PF03193: Protein of unknown function, DUF258 Length = 1916 Plus Strand HSPs: Score = 2510 (382.7 bits), Expect = 6.1e-109, P = 6.1e-109 Identities = 502/502 (100%), Positives = 502/502 (100%), Strand = Plus / Plus Query: 357 CGATGTCTCCAGAAAACCCCAACCGAGCAAAAATATGCTCAGAGCGAAGCACATCGGTAA 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135 CGATGTCTCCAGAAAACCCCAACCGAGCAAAAATATGCTCAGAGCGAAGCACATCGGTAA 194 Query: 417 AAATTACTCCTCCTCCTTGTCACCAGTTCTCTCGCCGGAGCATAAACCTTCGCTCTTAGA 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 195 AAATTACTCCTCCTCCTTGTCACCAGTTCTCTCGCCGGAGCATAAACCTTCGCTCTTAGA 254 Query: 477 GTCTCAAGCTATTGGTACTGTCGCAACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCA 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 255 GTCTCAAGCTATTGGTACTGTCGCAACAGCTCAAGCGAACTTTATGCGCGTCATTGTTCA 314 Query: 537 AGATGTAGCTAATTCTGTGACGAGTGATGATGATAATGATTCTTCAAAGACTGGTGTTGA 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 315 AGATGTAGCTAATTCTGTGACGAGTGATGATGATAATGATTCTTCAAAGACTGGTGTTGA 374 Query: 597 ATTGCTTTGTGTGGTGAGAGCTGTGTTGAAGAAAATACGAAGGAGAGTTTTAGTTGGAGA 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 375 ATTGCTTTGTGTGGTGAGAGCTGTGTTGAAGAAAATACGAAGGAGAGTTTTAGTTGGAGA 434 Query: 657 TAAGGTTCTTGTTGGATCTATTGATTGGGTTGATAGAAGAGGAATGATTGAGAATGTGTT 716 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 435 TAAGGTTCTTGTTGGATCTATTGATTGGGTTGATAGAAGAGGAATGATTGAGAATGTGTT 494 Query: 717 TCATCGACGTTCGGAGATTTTGGATCCACCTGTTGCGAACGTTGATCATTTGCTTGTTCT 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 495 TCATCGACGTTCGGAGATTTTGGATCCACCTGTTGCGAACGTTGATCATTTGCTTGTTCT 554 Query: 777 TTTCTCTTTGGATCAACCGAAACTTGAGCCGTTTACTCTTACTAGGTTCTTGGTGGAAGC 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 555 TTTCTCTTTGGATCAACCGAAACTTGAGCCGTTTACTCTTACTAGGTTCTTGGTGGAAGC 614 Query: 837 TGAATCTACTCGTATTCCATTA 858 |||||||||||||||||||||| Sbjct: 615 TGAATCTACTCGTATTCCATTA 636 >At1g67460 68414.t07040 hypothetical protein contains Pfam domain PF03193: Protein of unknown function, DUF258 Length = 1992 Plus Strand HSPs: Score = 870 (136.6 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48 Identities = 238/306 (77%), Positives = 238/306 (77%), Strand = Plus / Plus