At5g66055 SYNGENTA 54841
Genomic Sequence (from TAIR)
TGAAGTGTTTTTCGGACAATAGAAGTGAGATCATTGGCTTTTGAGGATCCGGCATTGTTGCTGGGCACCGAGAGAATTCCAAAGGCGAGAAGAATCAAAA TCACGAAAGTGGACATGATCAATACGGCGAAGACGAGCGTTGAATGCGAGGATTTCCGAGCTGAAGGACGATGATTCCTCGGTCTCGCCATCATttttgc aacaaggatgagatccggccgagcgagattcgaaagaagcagagcagcagcaacaatggagtttattttcttactcgtggtgtctggtagattgactaat caaaggacgaacgggaagtcaggcccatatgtttaagtaaggcccattagaaagtgaggcccattgaaattgtcggatactacatcagaggccggcgagg aggagaggagaaagctccgttattcaagatt►attcc◄gataATGC►AGTCACTCTCCACCCCACACACCATCTCTCTTCTTCTCCCCAGAACCTCTCCG TCTCGTCTTTCTCCCTCTCTTCACTCCCTTGCTTTCCCCACTCGATTACGGTCTCTTTCCTATTCTTCTCAAACGTCGATCCTCCCCGATGCCGGCGATG ATTTCATTGTCGGTGACTGTCTCGTCTACGAGGACGGCGTCTTCGAAGACCCTTACCTTGATAAGGAGGTCACTCAGGTTGCGAAGCAGGAGCGCAAGAA GAATCGGCGTGGCGGGGCTAAGAGATTAGATGAATCCGAGATTGAGCCCGAGAACCTCGTGCCAGAGGAATGGAGGGATATTCAGGCGGAGGTGAATCTG ACGAAGAAGGACAAGCGCAAAATAGCGCAGGAGATGGAGTTCGGGGTTCGGGTGGAGAAGAAGAGGCAAGGGCTAATTCCGCTGAGGAAAGTTGACTTGA ATGACTTTCTCACGTACAAGGAAGCCAAGTTGGCTCAATTGAGGCCTGTCATTCTCGATAAACCGGGAAATTTCTCCGACGACAGTGGAGCGTCAAGCGA TGGAGAGACCGCTGTATCATCTCCCAGCGAGCGAGTGGCTCCTAAGAACCCTAGATGGGCAGTTTACGGAAAGGGATTCGACCACGTTGCCAAGTTCTTC AATAGCGACAAGTACGATCCCAGCGACAAGAAATCCGACGgtatacgtttaccactcttgtttccttctcttgcttgaattgcaaaaagagcttatattt ggctgatccctcgttagGCCCTCGAAAGCTGCTTTCAAAAGAAGAGAAGTTTATGCTCAATAGCCGGAATCCTGACCTAGCCGTTGCCACATCAgtaagt ccccttacgatgctcttcgtcaaagtgaatgttttcagtctctgatgaaaatgtatttatgtgtgtgtacctctggtgaatcagAAAAAATGGCTTCCTC TTCACACACTGGCAGCATGTGGAGAGTTTTATCTGGTTGATTCCTTGCTAAAGCACAATCTTGATATCAATGCAACCGATGTGgtatgtctgactttttt gaagctgttgcttttgtgcacagtgtttatgtttgttggcgtctctttctagtgttgtttccattcttgtcgtttctagGGCGGCTTGACAGTACTTCAC CGAGCAATCATTGGTAAGAAGCAGGCTATTACTAACTACCTGCTGAGGGAATCGGCAAATCCATTTGTTCTTGATGACgtaagtggtcaactaatgatat ttatatcttgttatgatctcccttgcgcttcagatactggatctgatccgtttggtttatgatagGAAGGTGCGACCTTGATGCACTATGCTGTGCAAAC AGCATCAGCTCCCACAATAAAACTTCTCCTACTGTATAACGCTGATATAAACGCTCAGGACAGGgtaggatgatgtcaagcattcattgtaagacaacat cattgttgatcaggtggttgacaatttggcactgggttttcagGACGGGTGGACTCCACTGCACGTTGCAGTACAGGCCAGAAGAAGCGACATTGTAAAG CTTCTTTTGATAAAAGGGGCGGACATAGAAGTGAAGAACAAGgcaagttcccgcgtatattcccatatctggttttgaaagcattaactgatgataccat atttgactataccagGATGGGTTAACTCCGCTTGGGCTTTGCCTCTACCTTGGAAGAGAGATAAGGACGTATGAGGTGATGAAGCTGTTGAAAGAGTTTC CACTTAGCAGACACAAGAAGAGATTGGTAACAACAGATGAAGATATTGAATAGtcctttcaatttcagcttgaagtacactcacttatgagaacctgaga aaaggagatggaggtaaaggtgatgattagggcattggaacctcggagtcggagtgggtccactgtctcacttccttaaatttggtttgctgttagtctt atccatcgattttggatatttatcacaacttgatccattcttaaagaaaatatctgaaaataaataaaaagtaatacatatatatatatatatatattat ttataacagtctgtgaatggattggtttgatgtaccttgaggtagaggagtaaaaaggagttcatgatatttaaacttgagatgaggtgaatactgaata gcatctaaagtgtcggaagaagatgtcaaacctttggagatattacgacaggaccaccagttttgcacatttggtcggtgttccttgtgtacgcgttttt gtt
Border_1 (54841_LB2U)
GCCATGGAATAATCTTGAATAACGGAGCTTTCTCCTCTCCTCCTCGCCGGCCTCTGATGTAGTATCCGACAATTTCAATGGGCCTCACTTTCTAATGGGC
CTTACTTAAACATATGGGCCTGACTTCCCGTTCGTCCTTTGATTAGTCAATCTACCAGACACCACGAGTAAGAAAATAAACTCCATTGTTGCTGCTGCTC
TGCTTCTTTCGAATCTCGCTCGGCCGGATCTCATCCTTGTTGCAAAAATGATGGCGAGACCGAGGAATCATCGTCCTTCAGCTCGGAAATCCTCGCATTC
AACGCTCGTCTTCGCCGTATTGATCATGTCCACTTTCGTGATTTTGATTCTTCTCGCCTTTGGAATTCTCTCGGTGCCCAGCAACAATGCCGGATCCTCA
AAAGCCAATGATCTCACTTCTATTGTCCGAAAAACACTTCAGAGGTAAGATACCATCCCATGCCAATATTGAATTTCAATTTAGTGTGCTTCAAGATCGG
GTTAACTTTTCCTTCTCTTTTTTCCCGTAGAAGTGGCGAAGATGATTCAAAGAACGAGCGTTGGGTTGAAATAATCTCTTGGGAACCCAGAGCTTCTGTT
TACCACAATTTCTTGGTGAGCCTATGACCTATCCATATACAGATTTGACTTTTTTTCCTCCCTTGG
| Start of BLAST Alignment: | NT < 4 / 5’ UTR |
| First 15 bp Perfect Match: | NT < 4 / 5’ UTR |
BLAST Details: Query Sequence: 54841_LB2U Length: (666 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N K2A18 67930 3305 4.1e-143 1 F14O10 61418 479 1.9e-15 1 F4B14 67208 403 5.1e-12 1 T17A5 50894 225 0.14 1 K2A18 67930 Length = 89,899 Plus Strand HSPs: Score = 3305 (501.9 bits), Expect = 4.1e-143, P = 4.1e-143 Identities = 661/661 (100%), Positives = 661/661 (100%), Strand = Plus / Plus Query: 6 GGAATAATCTTGAATAACGGAGCTTTCTCCTCTCCTCCTCGCCGGCCTCTGATGTAGTAT 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35719 GGAATAATCTTGAATAACGGAGCTTTCTCCTCTCCTCCTCGCCGGCCTCTGATGTAGTAT 35778 Query: 66 CCGACAATTTCAATGGGCCTCACTTTCTAATGGGCCTTACTTAAACATATGGGCCTGACT 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35779 CCGACAATTTCAATGGGCCTCACTTTCTAATGGGCCTTACTTAAACATATGGGCCTGACT 35838 Query: 126 TCCCGTTCGTCCTTTGATTAGTCAATCTACCAGACACCACGAGTAAGAAAATAAACTCCA 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35839 TCCCGTTCGTCCTTTGATTAGTCAATCTACCAGACACCACGAGTAAGAAAATAAACTCCA 35898 Query: 186 TTGTTGCTGCTGCTCTGCTTCTTTCGAATCTCGCTCGGCCGGATCTCATCCTTGTTGCAA 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35899 TTGTTGCTGCTGCTCTGCTTCTTTCGAATCTCGCTCGGCCGGATCTCATCCTTGTTGCAA 35958 Query: 246 AAATGATGGCGAGACCGAGGAATCATCGTCCTTCAGCTCGGAAATCCTCGCATTCAACGC 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 35959 AAATGATGGCGAGACCGAGGAATCATCGTCCTTCAGCTCGGAAATCCTCGCATTCAACGC 36018 Query: 306 TCGTCTTCGCCGTATTGATCATGTCCACTTTCGTGATTTTGATTCTTCTCGCCTTTGGAA 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36019 TCGTCTTCGCCGTATTGATCATGTCCACTTTCGTGATTTTGATTCTTCTCGCCTTTGGAA 36078 Query: 366 TTCTCTCGGTGCCCAGCAACAATGCCGGATCCTCAAAAGCCAATGATCTCACTTCTATTG 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36079 TTCTCTCGGTGCCCAGCAACAATGCCGGATCCTCAAAAGCCAATGATCTCACTTCTATTG 36138 Query: 426 TCCGAAAAACACTTCAGAGGTAAGATACCATCCCATGCCAATATTGAATTTCAATTTAGT 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36139 TCCGAAAAACACTTCAGAGGTAAGATACCATCCCATGCCAATATTGAATTTCAATTTAGT 36198 Query: 486 GTGCTTCAAGATCGGGTTAACTTTTCCTTCTCTTTTTTCCCGTAGAAGTGGCGAAGATGA 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36199 GTGCTTCAAGATCGGGTTAACTTTTCCTTCTCTTTTTTCCCGTAGAAGTGGCGAAGATGA 36258 Query: 546 TTCAAAGAACGAGCGTTGGGTTGAAATAATCTCTTGGGAACCCAGAGCTTCTGTTTACCA 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36259 TTCAAAGAACGAGCGTTGGGTTGAAATAATCTCTTGGGAACCCAGAGCTTCTGTTTACCA 36318 Query: 606 CAATTTCTTGGTGAGCCTATGACCTATCCATATACAGATTTGACTTTTTTTCCTCCCTTG 665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 36319 CAATTTCTTGGTGAGCCTATGACCTATCCATATACAGATTTGACTTTTTTTCCTCCCTTG 36378 Query: 666 G 666 | Sbjct: 36379 G 36379 F14O10 61418 Length = 53,889 Plus Strand HSPs: Score = 479 (77.9 bits), Expect = 1.9e-15, P = 1.9e-15 Identities = 263/427 (61%), Positives = 263/427 (61%), Strand = Plus / Plus
Border_2 (54841_LB1D)
ATTTGTTGCCATTGCCTGGTATGAGTCACTCTCCACCCCACACACCATCTCTCTGCTTCTCCACAGAACCTCTCCGTCTCGTCTTTCTCCCTCTCTTCAC
TCCCTTGCTTTCCCCACTCGATTACGGTCTCTTTCCTATTCTTCT
| Start of BLAST Alignment: | NT < 9 / 5’ UTR |
| First 15 bp Perfect Match: | NT 4 / Exon 1 of 7 |
BLAST Details: Query Sequence: 54841_LB1D Length: (145 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g66055 68418.t07668 ankyrin repeat protein / AKRP (AKR... 598 2.0e-21 1 At3g33073 68416.t03890 hypothetical protein 169 0.062 1 At1g34410 68414.t03847 transcriptional factor B3 family p... 170 0.075 1 At2g07677 68415.t00848 auxin-responsive factor (ARF) -rel... 168 0.086 1 >At5g66055 68418.t07668 ankyrin repeat protein / AKRP (AKR) identical to ankyrin repeat protein (AKRP) [Arabidopsis thaliana] SWISS-PROT:Q05753 Length = 2109 Plus Strand HSPs: Score = 598 (95.8 bits), Expect = 2.0e-21, P = 2.0e-21 Identities = 130/137 (94%), Positives = 130/137 (94%), Strand = Plus / Plus Query: 11 ATTGCCTGGTA-TG-AGTCACTCTCCACCCCACACACCATCTCTCTGCTTCTCCACAGAA 68 ||| || | || || ||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct: 22 ATT-CC-GATAATGCAGTCACTCTCCACCCCACACACCATCTCTCTTCTTCTCCCCAGAA 79 Query: 69 CCTCTCCGTCTCGTCTTTCTCCCTCTCTTCACTCCCTTGCTTTCCCCACTCGATTACGGT 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80 CCTCTCCGTCTCGTCTTTCTCCCTCTCTTCACTCCCTTGCTTTCCCCACTCGATTACGGT 139 Query: 129 CTCTTTCCTATTCTTCT 145 ||||||||||||||||| Sbjct: 140 CTCTTTCCTATTCTTCT 156 >At3g33073 68416.t03890 hypothetical protein Length = 906 Minus Strand HSPs: Score = 169 (31.4 bits), Expect = 0.065, P = 0.062 Identities = 75/113 (66%), Positives = 75/113 (66%), Strand = Minus / Plus