At3g54670 SYNGENTA 55132
Genomic Sequence (from TAIR)
caaaaaccaagcaaggtaaacaaaggggaaaaatgaacaaacatactacacaaacatccatcaatattttctggatcagaatctagaaacccataaaaag atgaacaaaacctaaactttaccaatttaacaaatcatttagaaaacacacaaacaggttacaatacaaaaatcttctttacaaagttaaaaccgaatga aaacttgacactactaatctataaacatgagtatatatagtttttcttgcaaaatatcataaaaacttgattattttttttaaaaacataagatagaaca atttagtcgagcccatacgaaactacgccgtatcattcggcccagccctttgattaaaaaattaaacgcactgtgagtctgtgaaatctcctcggcttca acttccggattaaggggaagagatgaaattctgaaatcccttgagagaaagatttgtttcgcctctcaaaacattttcaattcccgccaattttcttctc cgagaatacccccaaccttctagaaaccctaatttggtttaatttcattctccactactttctctgaaaccaaactcgagatctctcccccaatcATGCC TGCGATACAATCCCCATCGGGGAAGATCTTGCAGCTTGAGATGGAGAATTTCAAATCTTACAAGGGTCATCAATTGGTTGGTCCTTTCAAGGATTTCACT GCTATTATTGGTCCCAACGGTTCTGGCAAATCTAACCTAATGGACGCTATTAGCTTCGTCCTCGGCGTTCGTACCGGTCAACTTCGTGGTTCTCAGCTTA AGGATCTTATCTACGCTTTTGATGATCGTGACAAGGAACAGAGAGGTCGTAAAGCTTTTGTTCGACTCGTTTATCAGATGGACGATGGAGTAGAGCTTCG TTTCACTCGTTCTATTACTAGCGCTGGTGGGAGTGAGTACCGTATTGATAATAGGGTTGTGAATTTGGATGAGTACAATGGGAAGCTACGATCTCTTGGG ATACTTGTTAAGGCTCGTAATTTCTTGGTCTTTCAGgttgttgcttcgatttaattctatttttgtattgtttctatgaacgattctgtttgtttgatgt gaatttcgtgtttaattgttctggattgcaaaatgtagGGTGATGTTGAATCTATTGCTTCGAAGAATCCAAAAGAACTTACTGGACTCCTCGAGGAGAT TTCTGGTTCCGAGGAGCTTAAGAAAGAGTATGAAGGACTAGAAGAAAAGAAGGCCAGCGCTGAAGAAAAAGCAGCTCTTATATACCAGAAGAAGAAAACA ATTGGAAATGAGAAGAAGCTGAAGAAAGCACAAAAGGAAGAAGCTGAGAAGCATCTAAGGCTGCAGGAAGAACTGgtatttatgtggatttgctcttgtt ctctagtggagaagtgctgatttatttagtttgtgaactagcgtatctgcctacctgttaatctgtcttcacgccttgcagAAAGCTCTGAAGAGAGAAC GCTTCCTATGGCAATTATATAACATTGAAAATGATATCGAGAAGGCGAATGAGGATGTTGATTCTGAAAAGAGCAATCGTAAAGATGTCATGAGAGAGCT GGAAAAGTTTGAACGTGAGGCAGGTAAGAGAAAGGTAGAGCAAGCAAAGTATCTGAAAGAAATTGCTCAACGTGAGAAGAAGATTGCTGAGAAAAGCTCG AAGCTTGGAAAAATTgtgagtataccttggaaatctgtggttaacagattctattttcccttttaaatatagcattttgagacatgtcttacattttttt tttttttttgtaatcctctggaatttcactaaactttctcacttgagtaacttatatctgtacctttcctgtgagcagCAACCTGAGCTTCTGAGATTTA AGGAGGAGATAGCTCGCATAAAAGCAAAAATTGAGACCAATAGAAAGGACGTGGATAAGAGGAAAAAAGAAAAAGGGAAGCATTCCAAAGAAATTGAACA GATGCAGAAAAGCATTAAGGAGCTGAATAAGAAAATGGAATTATTTAATAAGAAGAGACAAGATAGCAGCGGAAAACTCCCAATGCTTGACAGTCAACTG CAAGATTATTTTCGACTgtaagtttgaaagaaataaggatttttttctcttcgcaaaaaaattgccgttttccaactgtcctgaggttatagatatgcac caacttgatttctctatattgcctatttaatcttcttgcttgagtttttgtggtgtaatgaatactacatgggtttacatgtttaacaaaaaagtttaat gaaatatttgttgggtatgagtacttattctgtgctatgaagaacagtctaagcaaacaaatagttacgcgttttgtttgacataatgacataaatctgg ttgtttacaggctctattattggtgctgttgttgtgacttttgtaatatgctctattattcacccttttgaatccttacgactacctttgttttctaatt aatgttccttcatgtttgtcactgtggttttgtctcagAAAAGAAGAAGCTGGAATGAAAACCATTAAGCTAAGAGATGAGCACGAGGTTCTAGAGAGGC AACGGCGTACCGATCTTGAAGCATTGAGAAATCTGGAAGAAAATTACCAGCAACTAATAAATAGGAAGAATGATCTTGATGAACAAATTAAGCGATTTAA AGACAGGCAAGGAGAGATTGAAACATCTTCGTCGAAATATAAGAATGAAACAACTAGTCTGAAAACGGAGTTACGTGCACTGCAAGAGAAGCACGTAAAT GCCAGgttagtttatgtcctctactcactaggttgtctagcaatggatggtttacttgcgatgttatgatatcctttaaatgcgacacattgctgcaagt ttttttaaaacctccttagagattcttcttgcggttgcttcatcttttgaactatggcttgagagatattggtaattcatttttcaagaacacattattt tccatcttccctatccatagtataaaccccttcttgagcaggcgaaatacattttgtatcccctgatactgaaattcaggatctgctgctgtactgaatt cctagctaaaccaaaatgaagcttgtaggctcgtagagaaaccttcaaagtcccttgaggtgcacctcaccagggagaactttatatttgttcttgatag ttgctaacctgcttatatgatgaacagGGAGGCCTCTGCGAAGTTGAAGACTAGAATCGCGGAATTAGAAGACCAGTTAAGTGATTTAACGGCTGAAAGG TATGAAAATGAGAGAGATAGTAGGCTAACACAGGCTGTTGAGTCTCTCAAGCGTCTATTTCAAGGAGTTCATGGTCGGATGACTGATCTTTGTCGGCCAA ATCGGAAGAAGTATAACCTTGCTGTCACTGTTGCCATGGGAAGATTTATGGATGCAGTAGTTGTAGAAGATGAAAACACGGGAAAGGATTGCATCAAGgt acttatcttatggtgttctatcctatggaatctgtgaacttctaaattcgtaatttctatctcttctctgctgacaattatagtttcagactttcaataa caggtaagtaagatatcctttacccatattactactcactagcatatgtcagcaaattaatgatgttttaaacaatacaacctcttagtgatgccttaga ctctaccacgtcctaaatgatacaattcatattatttaggtatgtaacatatatgctgtaatcatctccaggcagacttcattccttagaattaaaaatt aacccctattctatgatacttggcttcaacttaacttttcgaagctttttctaccttgcttttaagcaatttgaagtatatgtttaagaggactttgtac cactgctctaggtatgtgatgaaatgagttcttcttttttttttggtaatttgcagTACTTGAAAGAGCAAAGGCTTCCTCCTATGACATTTATTCCTCT TCAGTCAGTACGTGTCAAGCAAGTGTTTGAAAGATTGAGAAATTTGGGTGGCACAGCAAAGCTGGTGTTCGATGTTATCCAATATCCTTTGCATATAAGT GAAgtgatttgacttaaggatactcaaggttacctgtattgaaaacttctcatcccttggattcatatcattgcgtgcatagctgttggtagcttaagat aattttaatatattaaaccaagtattgagaagtatagaaaggtttacgtgagcagGTTTCTAAAATATATATTTTTGTCCTTAACTACTCCACGTTCGAT CCTGAATTGGAGAAGGCGGTTCTCTATGCTGTTGGAAATACTCTTGTCTGCGACGAACTTGAAGAAGCCAAGGTTCTTAGCTGGAGCGGAGAGAGATTTA AAGgtatgttcttgtttccttctttagatgtaatttactcatatatttgcactaaagttggcgttactttctacataacttgatttctgttatttctagT TGTGACTGTTGATGGTATATTACTCACAAAGGCGGGAACAATGACTGGTGGTACAAGTGGTGGAATGGAAGCAAAGTCTAATAAATGGGATGATAAGAAA ATTGAAGgttagtttgacaccagctggtttaaagcctcttcacttctgatgtattttcttagaagagatatttgtttgtgcagGTTTGAAGAAAAATAAA GAAGATTTCGAACAACAACTAGAAAATATTGGATCTATTCGAGAAATGCAAATGAAAGAGTCTGAAATATCGGGTAAAATAAGTGGACTTGAAAAAAAGA TTCAGTATGCTGAAATTGAGAAGgtaacaaccaatttatcttttctaagatgagtggtctcatatattttacttactgttgtcaagagaaccctgattgg gataagaatgccatacagtagcacccattttatctttccttctgctaggaggagctgtcactattcagaatatactaattggggaatttgtttaacagAA AAGTATCAAAGACAAACTTCCACAGCTTGAGCAAGAGGAGCGGAATATCATTGAAGAAATTGATCGCATAAAACCTGAACTCTCTAAGGCAATTgtctat cttttctgatatttggtagagttaatacctgatgaaaatagtatgactgaatgtcattggtatttaatgtagGCAAGAACTGAGGTCGATAAGAGAAAGA CAGAAATGAATAAGTTGGAGAAAAGAATGAATGAGATCGTGGACCGTATCTATAAGGATTTTAGCCAGTCTGTTGGGGTTCCAAACATACGTGTATATGA AGAAACTCAGCTCAAGACTGCTGAAAAGGAGGCTGAAGAAAGGCTGGAACTGAGTAACCAGCTTGCTAAGTTAAAATACCAgtatgtctcttctgctctg tttttctggttacatatcaattctagtcaaactacacatttacaatattactctcttttgatttctttttcccgtttttgtgctaacatatagctctgat tctgaagttaacatgccattcctgatttttcgttttttgtaaaactaaacactatcttgtgcatcatattattgtcacattttgactttcacgtgcctac taaaaagaagggactacggaactgtgtgaattttgtaattattatgcagctatggtctacactatcttgtattaccaagtgtgtgagggtcagtatcctg tagcctgtaaaaacctgtgttacaaacctctactacacgctaactggttggctgagttgacatactgctttctattgaatggagcttgagttgtatgatc agagtaaaagtacgtaatttagttggttcttgaaaatcattttttcgaatttcagGCTGGAATATGAGCAAAACCGTGATGTGGGGTCACGGATTCGAAA GATAGAGTCTTCTATCAGTTCTCTGGAAACTGATTTGGAAGGTATACAGAAGACAATGTCTGAACGTAAGGAGACAGCGGTAAAAATAACTAATGAAATC AACAATTGGAAGAAGGAAATGGAAGgtatattgattctatctttacatacatctgatgacatttttagttctaaacttttttttaatctcagtgccattt tgagttgtcaatttgaggatttcattcgtagcagacattatcatgaacctgtaaaagtacattgtctgtatctatgttggagctctgttactgaattgat atattcaaatatggaattttcttattctttttagcggttatatctatggatatttacatgctgttttcaaccaattgtctgtttgcattacataatcctt gatgtttggttgattgctctttgaacaaattttgggatgtacatggtctgctcgacatcttgcgtaaatgtatggttatgctacgtctgaatctaattca gaaagaaactcatatcatgataaactgcttgaggctgacagatggttgatgtaaaagttcagtatgattaattctgtagcgctgctattctcttctttgc ttttgcttgtataagcataagttacagaaccatatactttgattataaccttacctgtctaatgttctttgcctagCAAGAATCTGCACTGGTATCTTCT TTCTTAGAGACTATCTAATGCTCCTGCTTGCAGAGTGCAAACAAAAGTCGGAGGAGTATGAGAAGGAAATCCTGGATTGGAAAAAGCAGGCTTCTCAAGC GACAACAAGCATAACCAAGCTCAATCGTCAAATACATTCGAAGgtacaatgaagattcatcaaaccctttcctaaagatctgatatgtttgagtatagat acactaaagcttccatatgctatcagGAAACACAAATTGAGCAGCTGATCTCACAGAAACAGGAAA►TAACTGAGAAGTGTGAG◄CTCGAACATATTACC CTTCCTGTC►TTATCAGATGCTATGGAGGAAGATGATTCAGATGGGCCACAGTTTGACTTTAGTGAGCTGGGTAGAGCTTATCTCCAAGAACGGAGACCA TCTGCTCGTGAAAAAGTGGAGGCAGAATTTAGGCAGAAAATAGAATCTAAAACATCCGAGATTGAAAGAACGGCTCCAAATTTGAGAGCGCTTGACCAGT ATGAGGCTATACAAGAGAAAGAAAAACAAGTTAGCCAGGAGTTTGAAGCGGCCAGGAAAGAGGAGAAGCAAGTAGCGGATGCCTTTAATACTGTTAAGCA GAAGAGgtaactcgaaatttctcttgtgaaatgatatctagagctttgaagacaattgttaccaaatatcaacgactatatggtattatggtgaaaccaa ataccgaacaagtaaaagtctgaagattctagttctggggaaattacctgtcaaagttactgtttggatacaatgcacacacatgcacatgtacaaagaa catattcagttttttcccaactaatatattccattatagttttttctgctcatttcaaattgttgtgcagGTATGAGCTATTTATGGAAGCTTTCAACCA CATTGCTAGCAACATTGACAAGATCTATAAGCAACTAACCAAGAGTAATACGCACCCACTGGGTGGGACTGCTTATCTAAACCTAGAAAATGAGGATGAT CCGTTTCTACATGGTATAAAGTATACTACAATGCCCCCAACAAAGCGATTTCGTGACATGGAACAGCTCTCTGGAGGAGAGAAAACAGTTGCGGCCTTGG CGTTGCTCTTCTCCATACATAGgtatcctcaacgacctagatatcccatttgtttcaatgttaaaagtgattttgtaggttcatattgatttatctgtgg tgtttagtttcactctttgaaattggactagaagatggtgatcttgccagatgaaatttgttatttgtgtctggaaccatcagatttgtttgactcctta gcattggttttaccagtctggcatcgtcttaggttttctgttcctagtaaaatacccatcttcaaaatcgctttttgtttctttacgatctgaaatttgg cctacgctctcgtgtaaatatagcatggttgttctgcaaaagaagtttccatggtcagttgttatgaggatttgatgaagtttgtggtgttgattacctt tccatttttcagctatagGCCTTCACCCTTTTTCATACTTGATGAAGTGGATGCTGCGCTTGATAATCTAAACGTGGCAAAAGTTGCTAAATTCATTCGT AGCAAGTCATGCCAAGCCGCACGTGACAATCAGGATGCAGAGGATGGGAATGGCTTCCAAAGCATTGTAATATCTCTCAAGGACAGCTTCTATGACAAGG CGGAGGCTCTGGTTGGAGTTTACAGAGACACCGAGAGGAGgtaagcagaatatccacataaatcttttgtacatgcgtctattttattggcataatatct gagaactcgttggagatgtatttttggctgcagTTGCTCAAGTACAATGTCATTTGACCTTAGGAACTACCAAGAATCGTGAttggttcaacaaccctcg ggggattagggtttaggtaagtataagaaccctaactttgtaagtatagcaagtactgaatgatgtttgattgttaggtttgtaatttttgtgtcacaat gttaaaaggtatttcacagtggtaaggtgctttatttgcgatttgatttggcataggaccttataagttctgacactgtagagaacctatggaacctttt cttatgtgatactataagaaactcgtgattttagctgcatctgattgacgttttatgttttgataatagtttttggagacatgttgtcaaagtagaagta aagacaaatgtttctttaattcgtcggactagaaatcaaatcttcaaaagccatttttgtcgtcccaatcgactttcaaaaaagctttaaattagaacga cacaacaatgaatgatttaacccacaaaaagcttgaatccaaaaggtttgacttttcagaatttagtcttaaaattccgtaatcctatatattaacggat aag
Border_1 (55132_RB1)
AGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGCATGCTAGCATA
ACCCTCACACTTCTCAGTTATTTCCTGTTTCTGTGAGATCAGCTGCTCAATTTGTGTTTCCTGATAGCATATGGAAGCTTTAGTGTATCTATACTCAAAC
ATATCAGATCTTTAGGAAAGGGTTTGATGAATCTTCATTGTACCTTCGAATGTATTTGACGATTGAGCTTGGTTATGCTTGTTGTCGCTTGAGAAGCCTG
CTTTTTCCAATCCAGGATTTCCTTCTCATACTCCTCCGACTTTTGTTTGCACTCTGCAAGCAGGAGCATTAGATAGTCTCTAAGAAAGAAGATACCAGTG
CAGATTCTTGCTAGGCAAAGAACATTAGACAGGTAAGGTTATAATCAAAGTATATGGTTCTGTAACTTATGCTTATACAAGCAAAAGCAAAGAAGAGAAT
AGCAGCGCTACAGAATTAATCATACTGAACTTTTACATCAACCATCTGTCAGCCTCAAGCAGTTTATCATGATATGAGTTTCTTTCTGAATTAGATTCAG
ACGTAGCATAACCATACATTTACGCAAGATGTCGAGCAGACCATGTACATCCCAAAATTTGTTCAAAGAGCAATCAACCAAACATCAAGGATTATGTAAT
GCAAACAGACAATTGGTTGAAAACAGCATGTAAATATCC
| Start of BLAST Alignment: | NT 6288 / Exon 15 of 18 |
| First 15 bp Perfect Match: | NT 6288 / Exon 15 of 18 |
BLAST Details: Query Sequence: 55132_RB1 Length: (739 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g54670 68416.t05608 structural maintenance of chromoso... 3180 3.1e-138 1 At4g08076 68417.t01245 gypsy-like retrotransposon family ... 200 0.74 1 At4g08120 68417.t01277 CACTA-like transposase family (Tnp... 199 0.75 1 At2g21380 68415.t02394 kinesin motor protein-related 198 0.83 1 >At3g54670 68416.t05608 structural maintenance of chromosomes (SMC) family protein similar to SMC1 protein [Bos taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC protein) [Xenopus laevis] GI:3328231; contains Pfam profiles PF02483: SMC family C-terminal domain, PF02463: RecF/RecN/SMC N terminal domain Length = 8099 Minus Strand HSPs: Score = 3180 (483.2 bits), Expect = 3.1e-138, P = 3.1e-138 Identities = 636/636 (100%), Positives = 636/636 (100%), Strand = Minus / Plus Query: 739 GGATATTTACATGCTGTTTTCAACCAATTGTCTGTTTGCATTACATAATCCTTGATGTTT 680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5868 GGATATTTACATGCTGTTTTCAACCAATTGTCTGTTTGCATTACATAATCCTTGATGTTT 5927 Query: 679 GGTTGATTGCTCTTTGAACAAATTTTGGGATGTACATGGTCTGCTCGACATCTTGCGTAA 620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5928 GGTTGATTGCTCTTTGAACAAATTTTGGGATGTACATGGTCTGCTCGACATCTTGCGTAA 5987 Query: 619 ATGTATGGTTATGCTACGTCTGAATCTAATTCAGAAAGAAACTCATATCATGATAAACTG 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5988 ATGTATGGTTATGCTACGTCTGAATCTAATTCAGAAAGAAACTCATATCATGATAAACTG 6047 Query: 559 CTTGAGGCTGACAGATGGTTGATGTAAAAGTTCAGTATGATTAATTCTGTAGCGCTGCTA 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6048 CTTGAGGCTGACAGATGGTTGATGTAAAAGTTCAGTATGATTAATTCTGTAGCGCTGCTA 6107 Query: 499 TTCTCTTCTTTGCTTTTGCTTGTATAAGCATAAGTTACAGAACCATATACTTTGATTATA 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6108 TTCTCTTCTTTGCTTTTGCTTGTATAAGCATAAGTTACAGAACCATATACTTTGATTATA 6167 Query: 439 ACCTTACCTGTCTAATGTTCTTTGCCTAGCAAGAATCTGCACTGGTATCTTCTTTCTTAG 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6168 ACCTTACCTGTCTAATGTTCTTTGCCTAGCAAGAATCTGCACTGGTATCTTCTTTCTTAG 6227 Query: 379 AGACTATCTAATGCTCCTGCTTGCAGAGTGCAAACAAAAGTCGGAGGAGTATGAGAAGGA 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6228 AGACTATCTAATGCTCCTGCTTGCAGAGTGCAAACAAAAGTCGGAGGAGTATGAGAAGGA 6287 Query: 319 AATCCTGGATTGGAAAAAGCAGGCTTCTCAAGCGACAACAAGCATAACCAAGCTCAATCG 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6288 AATCCTGGATTGGAAAAAGCAGGCTTCTCAAGCGACAACAAGCATAACCAAGCTCAATCG 6347 Query: 259 TCAAATACATTCGAAGGTACAATGAAGATTCATCAAACCCTTTCCTAAAGATCTGATATG 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6348 TCAAATACATTCGAAGGTACAATGAAGATTCATCAAACCCTTTCCTAAAGATCTGATATG 6407 Query: 199 TTTGAGTATAGATACACTAAAGCTTCCATATGCTATCAGGAAACACAAATTGAGCAGCTG 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6408 TTTGAGTATAGATACACTAAAGCTTCCATATGCTATCAGGAAACACAAATTGAGCAGCTG 6467 Query: 139 ATCTCACAGAAACAGGAAATAACTGAGAAGTGTGAG 104 |||||||||||||||||||||||||||||||||||| Sbjct: 6468 ATCTCACAGAAACAGGAAATAACTGAGAAGTGTGAG 6503 >At4g08076 68417.t01245 gypsy-like retrotransposon family (Athila) has a 2.7e-64 P-value blast match to GB:CAA57397 Athila ORF 1 [Arabidopsis thaliana] Length = 3334 Minus Strand HSPs: Score = 200 (36.1 bits), Expect = 1.3, P = 0.74 Identities = 294/538 (54%), Positives = 294/538 (54%), Strand = Minus / Plus
Border_2 (55132_LB1U)
ATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAAATGTGTTATCAGATGCTATG
GAGGAAGATGATTCAGATGGGCCACAGTTTGACTTTAGTGAGCTGGGTAGAGCTTATCTCCAAGAACGGAGACCATCTGCTCGTGAAAAAGTGGAGGCAG
AATTTAGGCAGAAAATAGAATCTAAAACATCCGAGATTGAAAGAACGGCTCCAAATTTGAGAGCGCTTGACCAGTATGAGGCTATACAAGAGAAAGAAAA
ACAAGTTAGCCAGGAGTTTGAAGCGGCCAGGAAAGAGGAGAAGCAAGTAGCGGATGCCTTTAATACTGTTAAGCAGAAGAGGTAACTCGAAATTTCTCTT
GTGAAATGATATCTAGAGCTTTGAAGACAATTGTTACCAAATATCAACGACTATATGGTATTATGGTGAAACCAAATACCGAACAAGTAAAAGTCTGAAG
ATTCTAGTTCTGGGGAAATTACCTGTCAAAGTTACTGTTTGGATACAATGCACACACATGCACATGTACAAAGAACATATTCAGTTTTTTCCCAACTAAT
ATATTCCATTATAGTTTTTTCTGCTCATTTCAAATTGTTGTGCAGGTATGAGCTATTTATGGAAGCTTTCAACCACATTGCTAGCAACATTGACAAGATC
TATAAGCAACTAACCAAGAG
| Start of BLAST Alignment: | NT 6271 / Exon 15 of 18 |
| First 15 bp Perfect Match: | NT 6312 / Exon 15 of 18 |
BLAST Details: Query Sequence: 55132_LB1U Length: (720 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g54670 68416.t05608 structural maintenance of chromoso... 3190 1.1e-138 1 At3g15040 68416.t01685 expressed protein contains Pfam pr... 201 0.65 1 At1g49730 68414.t05102 protein kinase family protein cont... 200 0.72 1 At1g64480 68414.t06696 calcineurin B-like protein 8 (CBL8... 191 0.95 1 >At3g54670 68416.t05608 structural maintenance of chromosomes (SMC) family protein similar to SMC1 protein [Bos taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC protein) [Xenopus laevis] GI:3328231; contains Pfam profiles PF02483: SMC family C-terminal domain, PF02463: RecF/RecN/SMC N terminal domain Length = 8099 Plus Strand HSPs: Score = 3190 (484.7 bits), Expect = 1.1e-138, P = 1.1e-138 Identities = 660/680 (97%), Positives = 660/680 (97%), Strand = Plus / Plus Query: 42 TTATTAAGTTGTCTAAGCGTC-AATTTGTTTACACCACAAATGTGTTATCAGATGCTATG 100 | | | || || | ||| || || | || || | | ||| ||||||||||||||| Sbjct: 6487 TAACTGAGAAGTGTGAGC-TCGAACATATT-ACCCTTCC--TGTCTTATCAGATGCTATG 6542 Query: 101 GAGGAAGATGATTCAGATGGGCCACAGTTTGACTTTAGTGAGCTGGGTAGAGCTTATCTC 160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6543 GAGGAAGATGATTCAGATGGGCCACAGTTTGACTTTAGTGAGCTGGGTAGAGCTTATCTC 6602 Query: 161 CAAGAACGGAGACCATCTGCTCGTGAAAAAGTGGAGGCAGAATTTAGGCAGAAAATAGAA 220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6603 CAAGAACGGAGACCATCTGCTCGTGAAAAAGTGGAGGCAGAATTTAGGCAGAAAATAGAA 6662 Query: 221 TCTAAAACATCCGAGATTGAAAGAACGGCTCCAAATTTGAGAGCGCTTGACCAGTATGAG 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6663 TCTAAAACATCCGAGATTGAAAGAACGGCTCCAAATTTGAGAGCGCTTGACCAGTATGAG 6722 Query: 281 GCTATACAAGAGAAAGAAAAACAAGTTAGCCAGGAGTTTGAAGCGGCCAGGAAAGAGGAG 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6723 GCTATACAAGAGAAAGAAAAACAAGTTAGCCAGGAGTTTGAAGCGGCCAGGAAAGAGGAG 6782 Query: 341 AAGCAAGTAGCGGATGCCTTTAATACTGTTAAGCAGAAGAGGTAACTCGAAATTTCTCTT 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6783 AAGCAAGTAGCGGATGCCTTTAATACTGTTAAGCAGAAGAGGTAACTCGAAATTTCTCTT 6842 Query: 401 GTGAAATGATATCTAGAGCTTTGAAGACAATTGTTACCAAATATCAACGACTATATGGTA 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6843 GTGAAATGATATCTAGAGCTTTGAAGACAATTGTTACCAAATATCAACGACTATATGGTA 6902 Query: 461 TTATGGTGAAACCAAATACCGAACAAGTAAAAGTCTGAAGATTCTAGTTCTGGGGAAATT 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6903 TTATGGTGAAACCAAATACCGAACAAGTAAAAGTCTGAAGATTCTAGTTCTGGGGAAATT 6962 Query: 521 ACCTGTCAAAGTTACTGTTTGGATACAATGCACACACATGCACATGTACAAAGAACATAT 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6963 ACCTGTCAAAGTTACTGTTTGGATACAATGCACACACATGCACATGTACAAAGAACATAT 7022 Query: 581 TCAGTTTTTTCCCAACTAATATATTCCATTATAGTTTTTTCTGCTCATTTCAAATTGTTG 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7023 TCAGTTTTTTCCCAACTAATATATTCCATTATAGTTTTTTCTGCTCATTTCAAATTGTTG 7082 Query: 641 TGCAGGTATGAGCTATTTATGGAAGCTTTCAACCACATTGCTAGCAACATTGACAAGATC 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7083 TGCAGGTATGAGCTATTTATGGAAGCTTTCAACCACATTGCTAGCAACATTGACAAGATC 7142 Query: 701 TATAAGCAACTAACCAAGAG 720 |||||||||||||||||||| Sbjct: 7143 TATAAGCAACTAACCAAGAG 7162 >At3g15040 68416.t01685 expressed protein contains Pfam profile PF04520: Protein of unknown function, DUF584 Length = 1987 Plus Strand HSPs: Score = 201 (36.2 bits), Expect = 1.0, P = 0.65 Identities = 105/165 (63%), Positives = 105/165 (63%), Strand = Plus / Plus