At2g28880 SYNGENTA 55483
Genomic Sequence (from TAIR)
gtatggaaaaattcattttaatgtaatttaggggatagacttctataacagcagagtaagataagtatattataacattccataaaaccaaaaaaaaaga atattgttttctaaaacttgatttgtaaaattgaaactattattacttgatatatattgtgttacaagttgttgtttttttgaacattcctttctatatt tgtaaaagcaaaaaaattatttccatttttatgaatttatttgttcctctcattttcttcttcataaaggttataaaaagctctcaacaccatttgtttt ctcttcctccctcttcctcaccattgattcctctcagagctaaagcaaaagcttcttccattgtcttactttatacgattcgttgcttttgaatctcttc tcacttggcttcgtttctaaacgtaagtttctctgccactatcgttttccagatgtttgtgtttgatttcgtagatcgttcttaggagattaagtagaga gatttaattatatctaatgattccaattccattttcgtagctttgcgttgattaatctggattatagttttggatttgggaatagaaatttcactgtatt tagagataatgtttaggaaatggaacttttgagctatgtgaatttgtgattatgtgacattagaaccctaattttgagaaatctctgtgtctctctccct tttggtacaggagttATGAACATGAATTTTTCGTTTTGTTCAACATCTTCTGAGTTATCATATCCAAGTGAGAATGTTCTGAGATTTTCTGTTGCAAGTC GGCTGTTTTCTCCTAAATGGAAGAAAAGTTTCATTAGTTTACCTTGTCGTAGTAAAACTACGAGGAAGGTTTTGGCGTCAAGCCGTTATGTGCCAGGGAA ATTGGAAGATTTGTCGGTTGTTAAGAAGAGTTTACCGAGAAGAGAACCTGTGGAGAAGCTTGGTTTTGTGAGGACTTTGTTGATTGATAATTATGATAGT TATACATTCAATATATATCAGGCTCTGAGTACTATTAATGGAGgtaacttcatagcatctatctttctcttttgccagtctctatagatggattctatgt cttattcaaactctttatttgtatgatgtgtagTGCCTCCTGTCGTTATTCGGAATGATGAGTGGACGTGGGAAGAAGCTTACCATTACTTATATGAAGA TGTTGCTTTTGATAATATTGTTATATCGCCTGGACCTGGTTCGCCTATGTGTCCAGCTGATATAGgtatcagcaagttaatctagtttttgttgaaagtt tgtatgatttctcattcttcacttttgctctgcagGAATATGTCTTCGTCTTTTGCTTGAATGCCGTGATATCCCAATTCTAGGCGTCTGCCTTGGCCAC CAGgtaatattatcttcataaagatggctgcacttcatttgtttagtgtttcgtcttagttctctgtaaaaaacaatatgttttggcagGCACTAGGTTA TGTCCATGGAGCTCATGTGGTGCATGCCCCGGAACCAGTCCATGGACGGTTGAGgtattgaaaaatgtgattagtatgcaggaatttttctaatgctctc tctgtgtcttataataatcaccttcttttttgaatttttgtcaactgaaacaagtctttaagttgtttatatttggtcatatctcctccatttctcattt ctaagtgtctgctagatactttactcaccatttccatctacttcttgtagTGGGATTGAACATGATGGGAACATATTGTTTTCTGATATTCCATCCGGGA GAAACTCTGATTTTAAGgcaggtcatctacttttttatatttaacattcattgatcttctcagatacagagaacaaatttttgttgcgccattctgcagG TTGTTAGATACCATTCACTGATCATAGATAAGGAATCACTACCAAAGGAACTTGTACCAATAGCGTGGACGATTTATGATGACACTGGCTCTTTCTCTGA GAAGAATTCCTGTGTTCCTGTGAATAACACTGGGAGCCCACTTGGGAACGGATCTGTCATTCCTGTTTCAGAAAAGTTAGAAAATCGAAGTCATTGGCCT TCGTCCCATGTTAATGGGAAACAAGATAGACACATTCTCATGGGCATCATGCATTCTTCTTTTCCCCATTATGGTTTACAGgtttgatgtttacatgaga ttgtatttagaataagtttcctccattgttctgctctttgacatgccttgtcctttcagTTTCATCCAGAAAGTATTGCTACTACCTATGGTAGTCAGTT ATTTAAAAATTTCAAGGACATAACTGTGAATTATTGGAGTCGGTGCAAATCTACATCCCTGCGTCGAAGAAACATAAATGACACTGgtgagctactttaa gcttaatggttttcattagtactagattgtcatttccgcctctttcttctattattccatttcaagatttatttttgttttagtaacctgtggaattatt ttgtaatgaactgtcttggagcttctcctcaataataaatattctttagCAAACATGCAGGTGCCTGATGCTACTCAATTGCTGAAAGAACTTTCTAGAA CTAGATGTACAGGAAATGGTTCTAGCTATTTTGGGAACCCTAAGTCTCTGTTTTCTGCCAAGACAAATGGTGTAGACGTCTTTGATATGGTGGATTCATC ATATCCAAAACCACATACAAAATTGCTGAGGTTGAAATGGAAGAAGCATGAACGTCTTGCGCATAAAGTTGGTGGAGTAAGAAATATATTTATGGAACTC TTTGGCAAGAATAGAGGAAATGATACTTTTTGGCTGGATACTTCTTCTAGTGACAAGgttggtactctattctcctgaagtcccaatagtttaatgctat tactgttttcttctaaagaatgtttcttccaattacattgttccagGCTAGAGGACGATTTTCTTTCATGGGCGGTAAAGGTGGATCTCTCTGGAAGCAA TTGACATTTAGTTTATCTGATCAAAGgttttacgcatgacctactctttctctatccaacaaaggtttatgctctttttttaactcgagcgccataaacc tttctcctgcacattttcttaccaatgaacgccgactatattgatatggctgggataatctgaacaatgatgcatcatattatgggaagtgaatcattga atctatggctttgttttttcagTGAGGTTACATCAAAACATGCGGGACATCTTCTGATTGAAGATTCTCAGAGTTCTACTGAGAAACAATTCTTGGAAGA AGGCTTTCTTGATTTTCTCCGTAAGgtatacagaaagacttaataatggaactacttgatttattccaacacttgccgaaagcctatattttctttagaa agtgaaataaaatgattatacaatagtaaatagagactcatcagtgaatgtcaactgtatttttaccagGAGCTTTCATCTATCTCTTATGATGAGAAGG ACTTCGAAGAGTTGCCTTTTGATTTTTGCGGTGGATACGTAGGTTGTATTGGgtacgtgttaaatcatctaggctgtgattttttatagcaagctttgtt ccattagtggctttctattgtacaatttggttcttctggaatgaatgttgaataaccttttcttgtattgtagGTATGATATTAAAGTGGAATGTGGAAT GCCAATTAATCGTCACAAATCCAACGCTCCAGATGCATGTTTCTTCTTTGCGGATAATGTTGTCGCCATTGATCATCAACTCGATGACGTTTATATATTA TCGCTTTACGAAGAGGGAACTGCAGAAACCTCTTTCCTGAATGATACTGAAGAGAAGCTCATTAGCTTGATGGGTTTGTCCACAAGAAAGTTGGAGGATC AAACTCTTCCAGTTATAGATTCATCTCAATCCAAAACAAGTTTTGTTCCTGACAAATCCCGAGAGCAGTATATCAACGATGTTCAGAGCTGTATGAAGTA TATCAAAGACGGGGAGAGCTACGAGCTTTGTCTCACTACTCAAAACAGAAGGAAAATAGGAAATGCTGATCCTTTGGGACTTTATCTCCACCTGAGAGAG AGGAATCCAGCACCATATGCAGCATTTCTCAACTTCTCAAATGCAAATCTGTCTTTATGCTCTTCGTCCCCTGAAAGGTTTCTTAAGCTGGACAGAAATG GAATGCTTGAAGCAAAGCCGATTAAGGGTACTATAGCTCGTGGCTCCACGCCTGAAGAAG►ATGAATTTCT◄TAAATTGCAA►TTGAAACTCAGgtac◄a ccaaacacgttgttctagaatcattgaatgtttcttaattgttcacatcaatgctactttaacgttgtttttttccccatgtcttataacagTGAGAAGA ATCAAGCCGAGAATCTGATGATTGTTGACCTTCTAAGGAATGATCTCGGTCGTGTCTGTGAGCCTGGCTCAGTCCATGTACCTAACCTCATGGATGTAGA ATCATACACAACAGTACATACAATGGTGAGCACGATCCGTGGACTGAAAAAAACAGATATTAGTCCAGTGGAATGTGTAAGAGCTGCTTTCCCTGGCGGT TCAATGACTGGTGCCCCAAAACTAAGATCTGTTGAGATTCTCGATTCTCTAGAGAACTGTTCGAGAGGCCTTTACTCTGGCTCAATCGGGTATTTCTCGT ATAATGGTACGTTTGATCTGAATATTGTGATAAGAACAGTAATAATACATGAAGATGAAGCTTCCATTGGAGCAGGAGGAGCTATTGTTGCATTATCAAG TCCAGAAGATGAGTTTGAGGAAATGATTCTTAAGACTAGAGCTCCTGCTAATGCAGTCATGGAGTTTTGTAGTGATCAGAGGAGACAATAGttttgtctc ttcaaagttgaatgttttggtttgttgtgggtttaaaacagttatctatttttaaaatttgattcacattttttttataggaaaagagtgatttatctca aattcaaaaactacatatagttgtaagattattttttaaagatagttatttgattgaagtctctttaataaaagatagtttttaatgagttgttgcttag taccatttatcaaaatttgtaaccccactctaacatgtctttcactttcacaatttgagtactatgtttcatttattgaggttcagactgcaaacgtaaa taat
Border_1 (55483_RBU)
ATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACCATGA
TTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTATGACGC
TCGCGGTGACGCCATTTCGCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTT
CATGGTAAGCGTTAGAAATTCATCTTCTTCAGGCGTGGAGCCACGAGCTATAGTACCCTTAATCGGCTTTGCTTCAAGCATTCCATTTCTGTCCAGCTTA
AGAAACCTTTCAGGGGACGAAGAGCATAAAGACAGATTTGCATTTGAGAAGTTGAGAAATGCTGCATATGGTGCTGGATTCCTCTCTCTCAGGTGGAGAT
AAAGTCCCAAAGGATCAGCATTTCCTATTTTCCTTCTGTTTTGAGTAGTGAGACAAAGCTCGTAGCTCTCCCCGTCTTTGATATACTTCATACAGCTCTG
AACATCGTTGATATACTGCTCTCGGGATTTGTCAGGAACAAAACTTGTTTTGGATTGAGATGAATCTATAACTGGAAGAGTTTGATCCTCCAACTTTCTT
GTGGACAAACCCATCAAGCTAATGAGCTTCTCTTCAGTATCATTCAGGAAAGAGGTTTCTGCAGTTCCCTCTTCGTAAAGCGATAATATATAAACGTCAT
CGAGTTGATGATCAATGGCGACACATTATCCGCAAAGA
| Start of BLAST Alignment: | NT 3580 / Exon 13 of 14 (Intron in 5’ UTR) |
| First 15 bp Perfect Match: | NT 3555 / Exon 13 of 14 (Intron in 5’ UTR) |
BLAST Details: Query Sequence: 55483_RBU Length: (838 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g28880 68415.t03266 para-aminobenzoate (PABA) synthase... 2643 7.3e-115 1 >At2g28880 68415.t03266 para-aminobenzoate (PABA) synthase family protein similar to PABA synthase from Streptomyces griseus [SP|P32483], Streptomyces pristinaespiralis [gi:1575336]; contains Pfam profiles PF00425: chorismate binding enzyme, PF00117: glutamine amidotransferase class-I, PF04715: Anthranilate synthase component I, N terminal region Length = 4784 Minus Strand HSPs: Score = 2643 (402.6 bits), Expect = 7.3e-115, P = 7.3e-115 Identities = 541/552 (98%), Positives = 541/552 (98%), Strand = Minus / Plus Query: 838 TCTTTGCGGATAATGT-GTCGCCATTGATCATCAACTCGATGACGTTTATATATTATCGC 780 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3450 TCTTTGCGGATAATGTTGTCGCCATTGATCATCAACTCGATGACGTTTATATATTATCGC 3509 Query: 779 TTTACGAAGAGGGAACTGCAGAAACCTCTTTCCTGAATGATACTGAAGAGAAGCTCATTA 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3510 TTTACGAAGAGGGAACTGCAGAAACCTCTTTCCTGAATGATACTGAAGAGAAGCTCATTA 3569 Query: 719 GCTTGATGGGTTTGTCCACAAGAAAGTTGGAGGATCAAACTCTTCCAGTTATAGATTCAT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3570 GCTTGATGGGTTTGTCCACAAGAAAGTTGGAGGATCAAACTCTTCCAGTTATAGATTCAT 3629 Query: 659 CTCAATCCAAAACAAGTTTTGTTCCTGACAAATCCCGAGAGCAGTATATCAACGATGTTC 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3630 CTCAATCCAAAACAAGTTTTGTTCCTGACAAATCCCGAGAGCAGTATATCAACGATGTTC 3689 Query: 599 AGAGCTGTATGAAGTATATCAAAGACGGGGAGAGCTACGAGCTTTGTCTCACTACTCAAA 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3690 AGAGCTGTATGAAGTATATCAAAGACGGGGAGAGCTACGAGCTTTGTCTCACTACTCAAA 3749 Query: 539 ACAGAAGGAAAATAGGAAATGCTGATCCTTTGGGACTTTATCTCCACCTGAGAGAGAGGA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3750 ACAGAAGGAAAATAGGAAATGCTGATCCTTTGGGACTTTATCTCCACCTGAGAGAGAGGA 3809 Query: 479 ATCCAGCACCATATGCAGCATTTCTCAACTTCTCAAATGCAAATCTGTCTTTATGCTCTT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3810 ATCCAGCACCATATGCAGCATTTCTCAACTTCTCAAATGCAAATCTGTCTTTATGCTCTT 3869 Query: 419 CGTCCCCTGAAAGGTTTCTTAAGCTGGACAGAAATGGAATGCTTGAAGCAAAGCCGATTA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3870 CGTCCCCTGAAAGGTTTCTTAAGCTGGACAGAAATGGAATGCTTGAAGCAAAGCCGATTA 3929 Query: 359 AGGGTACTATAGCTCGTGGCTCCACGCCTGAAGAAGATGAATTTCTAACGCTTACCAT-G 301 |||||||||||||||||||||||||||||||||||||||||||||| | || | || | Sbjct: 3930 AGGGTACTATAGCTCGTGGCTCCACGCCTGAAGAAGATGAATTTCTTAAA-TTGCAATTG 3988 Query: 300 AAATTCAGATGC 289 ||| |||| | | Sbjct: 3989 AAACTCAGGTAC 4000
Border_2 (55483_LBD)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCCGCAATGTGTTTTGAAACTCAGGTACACCAA
ACACGTTGTTCTAGAATCATTGAATGTTTCTTAATTGTTCACATCAATGCTACTTTAACGTTGTTTTTTTCCCCATGTCTTATAACAGTGAGAAGAATCA
AGCCGAGAATCTGATGATTGTTGACCTTCTAAGGAATGATCTCGGTCGTGTCTGTGCTCCCTA
| Start of BLAST Alignment: | NT 3545 / Exon 13 of 14 (Intron in 5’ UTR) |
| First 15 bp Perfect Match: | NT 3565 / Exon 13 of 14 (Intron in 5’ UTR) |
BLAST Details: Query Sequence: 55483_LBD Length: (363 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g28880 68415.t03266 para-aminobenzoate (PABA) synthase... 883 3.7e-34 1 At4g08600 68417.t01351 hypothetical protein contains Pfam... 177 0.88 1 At5g20750 68418.t02233 Ulp1 protease family protein conta... 177 0.88 1 At4g07520 68417.t01115 hypothetical protein contains Pfam... 172 0.98 1 >At2g28880 68415.t03266 para-aminobenzoate (PABA) synthase family protein similar to PABA synthase from Streptomyces griseus [SP|P32483], Streptomyces pristinaespiralis [gi:1575336]; contains Pfam profiles PF00425: chorismate binding enzyme, PF00117: glutamine amidotransferase class-I, PF04715: Anthranilate synthase component I, N terminal region Length = 4784 Plus Strand HSPs: Score = 883 (138.5 bits), Expect = 3.7e-34, P = 3.7e-34 Identities = 191/203 (94%), Positives = 191/203 (94%), Strand = Plus / Plus Query: 159 ATTAAGTTGTCCGCAATGTGTT-TTGAAACTCAGGTACACCAAACACGTTGTTCTAGAAT 217 || || || || ||| || ||||||||||||||||||||||||||||||||||||| Sbjct: 3966 ATGAA-TT-TCTTAAAT-TGCAATTGAAACTCAGGTACACCAAACACGTTGTTCTAGAAT 4022 Query: 218 CATTGAATGTTTCTTAATTGTTCACATCAATGCTACTTTAACGTTGTTTTTTTCCCCATG 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4023 CATTGAATGTTTCTTAATTGTTCACATCAATGCTACTTTAACGTTGTTTTTTTCCCCATG 4082 Query: 278 TCTTATAACAGTGAGAAGAATCAAGCCGAGAATCTGATGATTGTTGACCTTCTAAGGAAT 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4083 TCTTATAACAGTGAGAAGAATCAAGCCGAGAATCTGATGATTGTTGACCTTCTAAGGAAT 4142 Query: 338 GATCTCGGTCGTGTCTGTGCTCC 360 ||||||||||||||||||| || Sbjct: 4143 GATCTCGGTCGTGTCTGTGAGCC 4165 >At4g08600 68417.t01351 hypothetical protein contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287 Length = 3264 Minus Strand HSPs: Score = 177 (32.6 bits), Expect = 2.1, P = 0.88 Identities = 141/237 (59%), Positives = 141/237 (59%), Strand = Minus / Plus