OSU  Syngenta  VBI
PDF  Help   

At1g01690 68414.t00075 expressed protein

Genomic Sequence (from TAIR)

Border_1 (56882_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ASCMAATCGAATTCAWTTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAGCACGTTCAGTTACCGCCAATG
AAACCTCTAGCGTCTAAAATGTTAAAAGCGTGAGATGTCTTCAGAAGCTGGTCATACCTAGCATGCCCCCAAGCAGCAATTTGTTAAATTCAAGAGGCAG
TGGTTAAATATGGACAAGAAAATTGACGATCGTGAGCATTGTGATAAACATACGCAGGGATTGGAAGTCCTAAGGCAAGCAAGGAACGTGCTTCTTCATC
AAAATAATCGAAATGCTTTTGAAGGCGATCCACACTAGCATGCTCTAAATAATATGAGCTCATTTCCTTCCTGTAATATCCACCCAACTATCAGTCTCAA
AACACAGAATAAGTTCGATAATGTTTGATTAAAAATCCATAAAAGTATATCAGGCTTTTACTCATTTTCCAAGAAAAGCTCCCCATAGGTGATT:CCATC
AGCATATAAGATCTTTTTGAAATGGTCAACTTCCTGTA:GGTTAAAACGAAAGGCTAACTTAACCCAAACATAACGGACCTATAACGGAAAAATGTGTAC
ATCAACCAATAAGGGAGTATAAG:ACTGACCTGAAGTAA:CATGATG:ATGCGCTCAAAGCCCANTAAGGTTATTTCNAACAGATACTGGGRGACAACCG
GAAGACNTTCCAGCCTAGAAAAGAAGCAAACCTTCCACAATTTATATTGTTTTTCTAACAACCG
BLAST Details:
Query Sequence: 56882_LB2 = >56882_LB2U 
Length: (859 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At3g48110 68416.t04871 aminoacyl-t-RNA synthetase, putati...  3059  9.5e-133  1
At2g39780 68415.t04496 ribonuclease 2 (RNS2) identical to...   185  0.9998    1



>At3g48110 68416.t04871 aminoacyl-t-RNA synthetase, putative similar to
           aminoacyl-t-RNA synthetase GI:2654226 from [Arabidopsis thaliana];
           contains Pfam profiles: PF02092 glycyl-tRNA synthetase beta
           subunit,PF02091 glycyl-tRNA synthetase alpha subunit
        Length = 8036

  Minus Strand HSPs:

 Score = 3059 (465.0 bits), Expect = 9.5e-133, P = 9.5e-133
 Identities = 702/781 (89%), Positives = 705/781 (90%), Strand = Minus / Plus

Query:   816 TTTCTAGGCTGGAANGTCTTCCGGTTGTCYCCCAGTATCTGTTNGAAATAACCTTANTGG 757
             |||||||||||||| |||||||| |||||+|| |||||||||| |||||||| ||| |||
Sbjct:  1237 TTTCTAGGCTGGAA-GTCTTCCG-TTGTCTCC-AGTATCTGTT-GAAATAAC-TTA-TGG 1290

Query:   756 GCTTTGAGCGCATCATCATGTTACTTCAGGTCAGTCTTATACTCCCTTATTGGTTGATGT 697
             |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct:  1291 GCTT-GAGCGCATCATCATGTTACTTCAGGTCAGTCTTATACTCCCTTATTG-TTGATGT 1348

Query:   696 ACACATTTTTCCGTTATAGGTCCGTTATGTTTGGGTTAAGTTAGCCTTTCGTTTTAACCT 637
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1349 ACACATTTTTCCGTTATAGGTCCGTTATGTTTGGGTTAAGTTAGCCTTTCGTTTTAACCT 1408

Query:   636 ACAGGAAGTTGACCATTTCAAAAAGATCTTATATGCTGATGGAATCACCTATGGGGAGCT 577
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1409 ACAGGAAGTTGACCATTTCAAAAAGATCTTATATGCTGATGGAATCACCTATGGGGAGCT 1468

Query:   576 TTTCTTGGAAAATGAGTAAAAGCCTGATATACTTTTATGGATTTTTAATCAAACATTATC 517
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1469 TTTCTTGGAAAATGAGTAAAAGCCTGATATACTTTTATGGATTTTTAATCAAACATTATC 1528

Query:   516 GAACTTATTCTGTGTTTTGAGACTGATAGTTGGGTGGATATTACAGGAAGGAAATGAGCT 457
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1529 GAACTTATTCTGTGTTTTGAGACTGATAGTTGGGTGGATATTACAGGAAGGAAATGAGCT 1588

Query:   456 CATATTATTTAGAGCATGCTAGTGTGGATCGCCTTCAAAAGCATTTCGATTATTTTGATG 397
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1589 CATATTATTTAGAGCATGCTAGTGTGGATCGCCTTCAAAAGCATTTCGATTATTTTGATG 1648

Query:   396 AAGAAGCACGTTCCTTGCTTGCCTTAGGACTTCCAATCCCTGCGTATGTTTATCACAATG 337
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1649 AAGAAGCACGTTCCTTGCTTGCCTTAGGACTTCCAATCCCTGCGTATGTTTATCACAATG 1708

Query:   336 CTCACGATCGTCAATTTTCTTGTCCATATTTAACCACTGCCTCTTGAATTTAACAAATTG 277
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1709 CTCACGATCGTCAATTTTCTTGTCCATATTTAACCACTGCCTCTTGAATTTAACAAATTG 1768

Query:   276 CTGCTTGGGGGCATGCTAGGTATGACCAGCTTCTGAAGACATCTCACGCTTTTAACATTT 217
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1769 CTGCTTGGGGGCATGCTAGGTATGACCAGCTTCTGAAGACATCTCACGCTTTTAACATTT 1828

Query:   216 TAGACGCTAGAGGTTTCATTGGCGGTAACTGAACGTGCT-GACGCTTAGA-C-AA--CTT 162
             |||||||||||||||||||||||| |||||||||||||| |    || |  | ||  | |
Sbjct:  1829 TAGACGCTAGAGGTTTCATTGGCG-TAACTGAACGTGCTCGTTATTTCGGTCGAATGCGT 1887

Query:   161 AA-TAACA-CA-TTGCGGACGTTTTTA-A-TGTACTGAATTAACGCCGAAWTGAATTCGA 107
             |  ||| | |  || | |   |||||| | |||| | | | | |     |+ ||  | ||
Sbjct:  1888 AGGTAAGATCTGTTCCAGTT-TTTTTAGAGTGTATT-ATTGAGCAATCCAACGAGCTTGA 1945

Query:   106 TTKGSTGTATCGAGATTGGTTATGAAATTCAGATGCTAGT-GTAATG-TATTGGTAATTT 49
             ||  +   |  |  | || || | |||   ||  | || | ||||   ||||  | || |
Sbjct:  1946 TTAACCAGAGAGGAAATGCTTTT-AAACA-AGTCGTTACTTGTAAAAATATTTATGATGT 2003

Query:    48 G 48
             |
Sbjct:  2004 G 2004


>At2g39780 68415.t04496 ribonuclease 2 (RNS2) identical to ribonuclease 2
           precursor SP:P42814, GI:289210; contains a ribonuclease T2 family
           histidine active site signature (PDOC00459)
        Length = 2507

  Plus Strand HSPs:

 Score = 185 (33.8 bits), Expect = 8.4, P = 0.9998
 Identities = 179/307 (58%), Positives = 179/307 (58%), Strand = Plus / Plus


Border (56882_LB2U)
Databae: Gene from AGI, Total Genome (DNA);
Start of BLAST Alignment:NT 2004 / Exon 8 of 33
First 15 bp Perfect Match:NT 1852 / Exon 8 of 33

Border_2 (56882_LB1)
TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTGAATAAACAAATT
GTGGATAAGATCTGTTCAATTCAAGTTGTATCTATTCGTTATTTCGGTCGAATGCGTAGGTAAGATCTGTTCCAGTTTTTTTAGAGTGTATTATTGAGCA
ATCCAACGAGCTTGATTAACCAGAGAGGAAATGCTTTTAAACAAGTCGTTACTTGTAAAAATATTTATGATGTGCATTTTTTGCTTCTGTGCATCCTCTT
TGAAAGAATAGCTTGGCTCGCCAATGTGCCCAACTGTGGTTAGCGACACGTGAGTCTCTTGGACATCCTCTTGGTGTTGCCTCCGAACCAGTTCCTCCCG
TTTGTCACAGAGCTGCTCTGGAAAAAGTGGCTGAAAAGGTTGGCTTGTTTTCTAATTAGAGAATTTACAATTGGAGCTTTTGTTACTGATTAATGATTAT
TTCCTTTTGATGAGTTGTGACTTGTGAGATGTTAGTTTGTGAAAATTTTTGGTGTCGCCATCTTCAGCATTACTTGCTTATATGGTCTATTTACGCATCA
AAAGCTGGGTATTTTGATATAGAAATATATTTCTGAAGATGTCAAATACGATATAGGTTCCTTTTTTGGTGGTTATGGGGGGGTCAATCGTTCCAGGGTT
TTTGAA
BLAST Details:
Query Sequence: 56882_LB1 = >56882_LBD 
Length: (706 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At3g48110 68416.t04871 aminoacyl-t-RNA synthetase, putati...  2771  1.1e-119  1
At1g01690 68414.t00075 expressed protein                       193  0.94      1
At5g48370 68418.t05550 thioesterase family protein simila...   186  0.995     1
At5g52040 68418.t05996 arginine/serine-rich splicing fact...   186  0.996     1


>At3g48110 68416.t04871 aminoacyl-t-RNA synthetase, putative similar to
           aminoacyl-t-RNA synthetase GI:2654226 from [Arabidopsis thaliana];
           contains Pfam profiles: PF02092 glycyl-tRNA synthetase beta
           subunit,PF02091 glycyl-tRNA synthetase alpha subunit
        Length = 8036

  Plus Strand HSPs:

 Score = 2771 (421.8 bits), Expect = 1.1e-119, P = 1.1e-119
 Identities = 587/619 (94%), Positives = 587/619 (94%), Strand = Plus / Plus

Query:    91 TAAACAAATT-GTGGATAAGATCTGTTCAATT-CA-AGTTGTATCTATTCGTTATTTCGG 147
             | ||||  || |  | || ||  | |||| |  |  |  || |  |  ||||||||||||
Sbjct:  1820 TTAACATTTTAGACGCTA-GAGGT-TTCATTGGCGTAACTGAACGTGCTCGTTATTTCGG 1877

Query:   148 TCGAATGCGTAGGTAAGATCTGTTCCAGTTTTTTTAGAGTGTATTATTGAGCAATCCAAC 207
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1878 TCGAATGCGTAGGTAAGATCTGTTCCAGTTTTTTTAGAGTGTATTATTGAGCAATCCAAC 1937

Query:   208 GAGCTTGATTAACCAGAGAGGAAATGCTTTTAAACAAGTCGTTACTTGTAAAAATATTTA 267
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1938 GAGCTTGATTAACCAGAGAGGAAATGCTTTTAAACAAGTCGTTACTTGTAAAAATATTTA 1997

Query:   268 TGATGTGCATTTTTTGCTTCTGTGCATCCTCTTTGAAAGAATAGCTTGGCTCGCCAATGT 327
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1998 TGATGTGCATTTTTTGCTTCTGTGCATCCTCTTTGAAAGAATAGCTTGGCTCGCCAATGT 2057

Query:   328 GCCCAACTGTGGTTAGCGACACGTGAGTCTCTTGGACATCCTCTTGGTGTTGCCTCCGAA 387
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2058 GCCCAACTGTGGTTAGCGACACGTGAGTCTCTTGGACATCCTCTTGGTGTTGCCTCCGAA 2117

Query:   388 CCAGTTCCTCCCGTTTGTCACAGAGCTGCTCTGGAAAAAGTGGCTGAAAAGGTTGGCTTG 447
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2118 CCAGTTCCTCCCGTTTGTCACAGAGCTGCTCTGGAAAAAGTGGCTGAAAAGGTTGGCTTG 2177

Query:   448 TTTTCTAATTAGAGAATTTACAATTGGAGCTTTTGTTACTGATTAATGATTATTTCCTTT 507
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2178 TTTTCTAATTAGAGAATTTACAATTGGAGCTTTTGTTACTGATTAATGATTATTTCCTTT 2237

Query:   508 TGATGAGTTGTGACTTGTGAGATGTTAGTTTGTGAAAATTTTTGGTGTCGCCATCTTCAG 567
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2238 TGATGAGTTGTGACTTGTGAGATGTTAGTTTGTGAAAATTTTTGGTGTCGCCATCTTCAG 2297

Query:   568 CATTACTTGCTTATATGGTCTATTTACGCATCAAAAGCTGGGTATTTTGATATAGAAATA 627
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2298 CATTACTTGCTTATATGGTCTATTTACGCATCAAAAGCTGGGTATTTTGATATAGAAATA 2357

Query:   628 TATTTCTGAAGATGTCAAATACGATATAGGTTCCTTTTTTGGTGGTTATGGGGGGGTCAA 687
             ||||||||||||||||||||||||||||| ||||||||||| || ||||| || | ||||
Sbjct:  2358 TATTTCTGAAGATGTCAAATACGATATAGTTTCCTTTTTTGTTGTTTATGTGGTGTTCAA 2417

Query:   688 TCGTTCCAGGGTTTTTGAA 706
             ||||| |||| ||| ||||
Sbjct:  2418 TCGTTACAGG-TTTCTGAA 2435


>At1g01690 68414.t00075 expressed protein
        Length = 10,031

  Plus Strand HSPs:

 Score = 193 (35.0 bits), Expect = 2.8, P = 0.94
 Identities = 127/206 (61%), Positives = 127/206 (61%), Strand = Plus / Plus


Border (56882_LBD)
Databae: Gene from AGI, Total Genome (DNA);
Start of BLAST Alignment:NT 1819 / Exon 8 of 33
First 15 bp Perfect Match:NT 1865 / Exon 8 of 33