At1g01690 68414.t00075 expressed protein
Genomic Sequence (from TAIR)
Border_1 (56882_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACASCMAATCGAATTCAWTTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAGCACGTTCAGTTACCGCCAATG
AAACCTCTAGCGTCTAAAATGTTAAAAGCGTGAGATGTCTTCAGAAGCTGGTCATACCTAGCATGCCCCCAAGCAGCAATTTGTTAAATTCAAGAGGCAG
TGGTTAAATATGGACAAGAAAATTGACGATCGTGAGCATTGTGATAAACATACGCAGGGATTGGAAGTCCTAAGGCAAGCAAGGAACGTGCTTCTTCATC
AAAATAATCGAAATGCTTTTGAAGGCGATCCACACTAGCATGCTCTAAATAATATGAGCTCATTTCCTTCCTGTAATATCCACCCAACTATCAGTCTCAA
AACACAGAATAAGTTCGATAATGTTTGATTAAAAATCCATAAAAGTATATCAGGCTTTTACTCATTTTCCAAGAAAAGCTCCCCATAGGTGATT:CCATC
AGCATATAAGATCTTTTTGAAATGGTCAACTTCCTGTA:GGTTAAAACGAAAGGCTAACTTAACCCAAACATAACGGACCTATAACGGAAAAATGTGTAC
ATCAACCAATAAGGGAGTATAAG:ACTGACCTGAAGTAA:CATGATG:ATGCGCTCAAAGCCCANTAAGGTTATTTCNAACAGATACTGGGRGACAACCG
GAAGACNTTCCAGCCTAGAAAAGAAGCAAACCTTCCACAATTTATATTGTTTTTCTAACAACCG
BLAST Details: Query Sequence: 56882_LB2 = >56882_LB2U Length: (859 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g48110 68416.t04871 aminoacyl-t-RNA synthetase, putati... 3059 9.5e-133 1 At2g39780 68415.t04496 ribonuclease 2 (RNS2) identical to... 185 0.9998 1 >At3g48110 68416.t04871 aminoacyl-t-RNA synthetase, putative similar to aminoacyl-t-RNA synthetase GI:2654226 from [Arabidopsis thaliana]; contains Pfam profiles: PF02092 glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA synthetase alpha subunit Length = 8036 Minus Strand HSPs: Score = 3059 (465.0 bits), Expect = 9.5e-133, P = 9.5e-133 Identities = 702/781 (89%), Positives = 705/781 (90%), Strand = Minus / Plus Query: 816 TTTCTAGGCTGGAANGTCTTCCGGTTGTCYCCCAGTATCTGTTNGAAATAACCTTANTGG 757 |||||||||||||| |||||||| |||||+|| |||||||||| |||||||| ||| ||| Sbjct: 1237 TTTCTAGGCTGGAA-GTCTTCCG-TTGTCTCC-AGTATCTGTT-GAAATAAC-TTA-TGG 1290 Query: 756 GCTTTGAGCGCATCATCATGTTACTTCAGGTCAGTCTTATACTCCCTTATTGGTTGATGT 697 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1291 GCTT-GAGCGCATCATCATGTTACTTCAGGTCAGTCTTATACTCCCTTATTG-TTGATGT 1348 Query: 696 ACACATTTTTCCGTTATAGGTCCGTTATGTTTGGGTTAAGTTAGCCTTTCGTTTTAACCT 637 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1349 ACACATTTTTCCGTTATAGGTCCGTTATGTTTGGGTTAAGTTAGCCTTTCGTTTTAACCT 1408 Query: 636 ACAGGAAGTTGACCATTTCAAAAAGATCTTATATGCTGATGGAATCACCTATGGGGAGCT 577 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1409 ACAGGAAGTTGACCATTTCAAAAAGATCTTATATGCTGATGGAATCACCTATGGGGAGCT 1468 Query: 576 TTTCTTGGAAAATGAGTAAAAGCCTGATATACTTTTATGGATTTTTAATCAAACATTATC 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1469 TTTCTTGGAAAATGAGTAAAAGCCTGATATACTTTTATGGATTTTTAATCAAACATTATC 1528 Query: 516 GAACTTATTCTGTGTTTTGAGACTGATAGTTGGGTGGATATTACAGGAAGGAAATGAGCT 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1529 GAACTTATTCTGTGTTTTGAGACTGATAGTTGGGTGGATATTACAGGAAGGAAATGAGCT 1588 Query: 456 CATATTATTTAGAGCATGCTAGTGTGGATCGCCTTCAAAAGCATTTCGATTATTTTGATG 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1589 CATATTATTTAGAGCATGCTAGTGTGGATCGCCTTCAAAAGCATTTCGATTATTTTGATG 1648 Query: 396 AAGAAGCACGTTCCTTGCTTGCCTTAGGACTTCCAATCCCTGCGTATGTTTATCACAATG 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1649 AAGAAGCACGTTCCTTGCTTGCCTTAGGACTTCCAATCCCTGCGTATGTTTATCACAATG 1708 Query: 336 CTCACGATCGTCAATTTTCTTGTCCATATTTAACCACTGCCTCTTGAATTTAACAAATTG 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1709 CTCACGATCGTCAATTTTCTTGTCCATATTTAACCACTGCCTCTTGAATTTAACAAATTG 1768 Query: 276 CTGCTTGGGGGCATGCTAGGTATGACCAGCTTCTGAAGACATCTCACGCTTTTAACATTT 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1769 CTGCTTGGGGGCATGCTAGGTATGACCAGCTTCTGAAGACATCTCACGCTTTTAACATTT 1828 Query: 216 TAGACGCTAGAGGTTTCATTGGCGGTAACTGAACGTGCT-GACGCTTAGA-C-AA--CTT 162 |||||||||||||||||||||||| |||||||||||||| | || | | || | | Sbjct: 1829 TAGACGCTAGAGGTTTCATTGGCG-TAACTGAACGTGCTCGTTATTTCGGTCGAATGCGT 1887 Query: 161 AA-TAACA-CA-TTGCGGACGTTTTTA-A-TGTACTGAATTAACGCCGAAWTGAATTCGA 107 | ||| | | || | | |||||| | |||| | | | | | |+ || | || Sbjct: 1888 AGGTAAGATCTGTTCCAGTT-TTTTTAGAGTGTATT-ATTGAGCAATCCAACGAGCTTGA 1945 Query: 106 TTKGSTGTATCGAGATTGGTTATGAAATTCAGATGCTAGT-GTAATG-TATTGGTAATTT 49 || + | | | || || | ||| || | || | |||| |||| | || | Sbjct: 1946 TTAACCAGAGAGGAAATGCTTTT-AAACA-AGTCGTTACTTGTAAAAATATTTATGATGT 2003 Query: 48 G 48 | Sbjct: 2004 G 2004 >At2g39780 68415.t04496 ribonuclease 2 (RNS2) identical to ribonuclease 2 precursor SP:P42814, GI:289210; contains a ribonuclease T2 family histidine active site signature (PDOC00459) Length = 2507 Plus Strand HSPs: Score = 185 (33.8 bits), Expect = 8.4, P = 0.9998 Identities = 179/307 (58%), Positives = 179/307 (58%), Strand = Plus / Plus
Border (56882_LB2U)
Databae:
Gene from AGI, Total Genome (DNA);
Start of BLAST Alignment: | NT 2004 / Exon 8 of 33 |
First 15 bp Perfect Match: | NT 1852 / Exon 8 of 33 |
Border_2 (56882_LB1)
TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTGAATAAACAAATTGTGGATAAGATCTGTTCAATTCAAGTTGTATCTATTCGTTATTTCGGTCGAATGCGTAGGTAAGATCTGTTCCAGTTTTTTTAGAGTGTATTATTGAGCA
ATCCAACGAGCTTGATTAACCAGAGAGGAAATGCTTTTAAACAAGTCGTTACTTGTAAAAATATTTATGATGTGCATTTTTTGCTTCTGTGCATCCTCTT
TGAAAGAATAGCTTGGCTCGCCAATGTGCCCAACTGTGGTTAGCGACACGTGAGTCTCTTGGACATCCTCTTGGTGTTGCCTCCGAACCAGTTCCTCCCG
TTTGTCACAGAGCTGCTCTGGAAAAAGTGGCTGAAAAGGTTGGCTTGTTTTCTAATTAGAGAATTTACAATTGGAGCTTTTGTTACTGATTAATGATTAT
TTCCTTTTGATGAGTTGTGACTTGTGAGATGTTAGTTTGTGAAAATTTTTGGTGTCGCCATCTTCAGCATTACTTGCTTATATGGTCTATTTACGCATCA
AAAGCTGGGTATTTTGATATAGAAATATATTTCTGAAGATGTCAAATACGATATAGGTTCCTTTTTTGGTGGTTATGGGGGGGTCAATCGTTCCAGGGTT
TTTGAA
BLAST Details: Query Sequence: 56882_LB1 = >56882_LBD Length: (706 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g48110 68416.t04871 aminoacyl-t-RNA synthetase, putati... 2771 1.1e-119 1 At1g01690 68414.t00075 expressed protein 193 0.94 1 At5g48370 68418.t05550 thioesterase family protein simila... 186 0.995 1 At5g52040 68418.t05996 arginine/serine-rich splicing fact... 186 0.996 1 >At3g48110 68416.t04871 aminoacyl-t-RNA synthetase, putative similar to aminoacyl-t-RNA synthetase GI:2654226 from [Arabidopsis thaliana]; contains Pfam profiles: PF02092 glycyl-tRNA synthetase beta subunit,PF02091 glycyl-tRNA synthetase alpha subunit Length = 8036 Plus Strand HSPs: Score = 2771 (421.8 bits), Expect = 1.1e-119, P = 1.1e-119 Identities = 587/619 (94%), Positives = 587/619 (94%), Strand = Plus / Plus Query: 91 TAAACAAATT-GTGGATAAGATCTGTTCAATT-CA-AGTTGTATCTATTCGTTATTTCGG 147 | |||| || | | || || | |||| | | | || | | |||||||||||| Sbjct: 1820 TTAACATTTTAGACGCTA-GAGGT-TTCATTGGCGTAACTGAACGTGCTCGTTATTTCGG 1877 Query: 148 TCGAATGCGTAGGTAAGATCTGTTCCAGTTTTTTTAGAGTGTATTATTGAGCAATCCAAC 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1878 TCGAATGCGTAGGTAAGATCTGTTCCAGTTTTTTTAGAGTGTATTATTGAGCAATCCAAC 1937 Query: 208 GAGCTTGATTAACCAGAGAGGAAATGCTTTTAAACAAGTCGTTACTTGTAAAAATATTTA 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1938 GAGCTTGATTAACCAGAGAGGAAATGCTTTTAAACAAGTCGTTACTTGTAAAAATATTTA 1997 Query: 268 TGATGTGCATTTTTTGCTTCTGTGCATCCTCTTTGAAAGAATAGCTTGGCTCGCCAATGT 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1998 TGATGTGCATTTTTTGCTTCTGTGCATCCTCTTTGAAAGAATAGCTTGGCTCGCCAATGT 2057 Query: 328 GCCCAACTGTGGTTAGCGACACGTGAGTCTCTTGGACATCCTCTTGGTGTTGCCTCCGAA 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2058 GCCCAACTGTGGTTAGCGACACGTGAGTCTCTTGGACATCCTCTTGGTGTTGCCTCCGAA 2117 Query: 388 CCAGTTCCTCCCGTTTGTCACAGAGCTGCTCTGGAAAAAGTGGCTGAAAAGGTTGGCTTG 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2118 CCAGTTCCTCCCGTTTGTCACAGAGCTGCTCTGGAAAAAGTGGCTGAAAAGGTTGGCTTG 2177 Query: 448 TTTTCTAATTAGAGAATTTACAATTGGAGCTTTTGTTACTGATTAATGATTATTTCCTTT 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2178 TTTTCTAATTAGAGAATTTACAATTGGAGCTTTTGTTACTGATTAATGATTATTTCCTTT 2237 Query: 508 TGATGAGTTGTGACTTGTGAGATGTTAGTTTGTGAAAATTTTTGGTGTCGCCATCTTCAG 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2238 TGATGAGTTGTGACTTGTGAGATGTTAGTTTGTGAAAATTTTTGGTGTCGCCATCTTCAG 2297 Query: 568 CATTACTTGCTTATATGGTCTATTTACGCATCAAAAGCTGGGTATTTTGATATAGAAATA 627 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2298 CATTACTTGCTTATATGGTCTATTTACGCATCAAAAGCTGGGTATTTTGATATAGAAATA 2357 Query: 628 TATTTCTGAAGATGTCAAATACGATATAGGTTCCTTTTTTGGTGGTTATGGGGGGGTCAA 687 ||||||||||||||||||||||||||||| ||||||||||| || ||||| || | |||| Sbjct: 2358 TATTTCTGAAGATGTCAAATACGATATAGTTTCCTTTTTTGTTGTTTATGTGGTGTTCAA 2417 Query: 688 TCGTTCCAGGGTTTTTGAA 706 ||||| |||| ||| |||| Sbjct: 2418 TCGTTACAGG-TTTCTGAA 2435 >At1g01690 68414.t00075 expressed protein Length = 10,031 Plus Strand HSPs: Score = 193 (35.0 bits), Expect = 2.8, P = 0.94 Identities = 127/206 (61%), Positives = 127/206 (61%), Strand = Plus / Plus
Border (56882_LBD)
Databae:
Gene from AGI, Total Genome (DNA);
Start of BLAST Alignment: | NT 1819 / Exon 8 of 33 |
First 15 bp Perfect Match: | NT 1865 / Exon 8 of 33 |