At2g03150 SYNGENTA 57679
Genomic Sequence (from TAIR)
cttgaacccttactactaacaaacatatcgttctctttactttctcttcttcacagcaaactaatcctcaaaccattctctcaagctcgtcttcttcctc tatctgtgatttctagggttttgttttttccctttttaatctctcaattgcttagtctcttcctcttctctcaacacgtaagacacgcaaagaagaaaca atttttcaatcttcttgtaggtaaagtccgtcaatttaatttaattttactcgcttgatcgaatcatgtatgtgaattcgaaattgtagtttagggacgt gaaaatttcggttgattcatgttgtttttttgataaatctttgttattgttcgttcttcgtattatctctcaaagaatgtactaactaaaattacaaaat tgaaaccagATGCATAGAGATATGTATTCTTCAAGAGGCACTGGCTACGGTCAACAGCAATACGGTTCGCAATCTGGTTATTCTCAGAATgtaagatcat caatttcaattgaaaccaaattatgcttaattatgcttaatttatgtgtaattgttatgtagCTTGGATCTGGCTATCCTGGAAGTTCAGTGAGTGGTGG CGCAGAAGGAGGCTCTCAGATTTCTTTGAGTTCTCGCCATCCATCAATTACAGGTGCTCCTCAAGAGACTGACATTGGTGGTGGATACAGATCTCATTTA TCTACAGCTGCTAGTCATTACGGAACACAATATGGCTCTGTGTATGGATCAACTTCTCTTAGCAGCTCTCAGCCTTTAAGCACCAATGGTTTAGGTTCAT CAGTTTTGGATAACCGCTCGGGATATGTCCCTACTTTACCTGATTCACCAAAGTTTGCATCTGGAAGCTATTTGTCTCCCTCGAGCCATGGTTATGGTCA AAAGACGGACGATTTGTATTCCGATAAGCTGTCTGGTTACATTCCCGTTGATAGAAGGCAGTATGGTGAACAATCAAGCTCTTATCTCGGTAGGGAGTTG CAAAATGAACCAACTAGGCGATATGCTGATCCATCTAATTTTGCTCGCCAGgtgcgcctactctcatatttttaagagaaaatcttatgaatttggttgg tttctgttcaatgttgttacaattggcttgatgatactcgttattatatgattttggcagACTGACTTGTATGATCGCATTGATCAAGCATCGCTTCTCC GAGGAGAACAATTATTAAAAATGCAGTCGCTTCATACCTCTTCTGTTGATGCAGGTGTCAACAGgtatttttcgatgattgattctattatatcggtagc cagatttctttctagcatagatttctttttcaaatagtttgtattttttggtacatctgttatctgtattgttttcagatctgttctctcaggacctttg ttataaagctactgtaacttcttgtcaaaactttcaataacgattgaagaaaaaacatatcttattacactgagtagcatacatttctggcagACAAACC GATTATCTTACAGAACGAAGTTCTACTGTGCGTCATTCTGACCAAGAAGCAATGCATTATGGAGGAAGGCTTGAGTCTGATCCTCACGGTTTATCAGTAC GCAACACATCTTCTTATGCCAGCCAACATACCCCATCGTTATTAGGAGCTGTTCCTCGGCGAAACTTAGATGACTATATTTATCCGGAGAGTTCTTCAAA TCCTGGTTATGGTGTTAGCTTACCTCCAGGCAGGGATTATGGCACCGGGAAAGGTATCCATAGTGCAGCGTCTCTCGACTTGGACTACCCTGGTGGCATG CTGGCTCGTGGTACTGGCGCTGCTCCTCGTGTTGATGATCTCCGGAAAGGTGACCGGGCAAGTTATCTCAGGGAGTTTGATCTAAGAGAAGAAGAGCGTC GTCGTGAGGATCAACGCGCCAGAGATAAGGAGCGAGAACGAGAGAGGGAGCGCGAACATGACAGAGAACGAGAGCGTCAGAGGGAACGAGAAAGGCAAAG AGCTAGGGACCGGGAGAGGGAACGCATATTGGAGAGACGGGAGAAGGAAAGACAAGGAGAAAGAGAACGTGAGCGAAAACGTGCTCTCGAAATAAAACGA GATCGGACTCCAACAGCAAGAGCTACGTCCAAGGACACAAAGGAGCGGACTCCAGTGCCCAAATCTATTTCTAGGGATGCACGTAGTTCCTCTTTGCGGC GGGATGCACACCATCGTGAAGCATCAATTAGgttttatttttgatctctgtcacgttcttcatctggaatacagggcattttatgttcctgcaccaggca ctaaccttatttctgttatacctgaagGCGTTCTTCACCGATTAAGCCAATAAGAAGAGATTATGTCTGCA◄AG◄gtaataagtgttccaagagattcct ctttcagtgatttttttgcctactcctcagggttacctcatcttcctttccattcctgcattctcgttgttttcttattgattgacttggacatctctta gtccctcctcaattactatatcagccttgccatttatcaagataatcctttcagctttctcattctttttctgtcgacgggatatcttcctgtacttggg cttgttatacttcctctttccttttgtggcgaatttacttggcctttcctagttgtgggtttatttgtccaagcttctgtcttcttgccacctctgggtg ttattttgcctgcttttaaaattagtgacatatatcaggttcctcatttttgtgtctccagttagtttacctgattactagttttttttctgatggactt cgtattgaattaaatgtggaaatgtttacaaggatgagacacttgatgcttaccactttctcaaatcaaggactttttgttatatttcccattaataaga ttgatggtgacagagataggaggggcagagttaccttacactctgtatgtgtgatgcagtgcttaagcgcagtgtgcattattctttattaaactattgg gtgacttatgtgcagGTTTTATCTTCGCGATTGGTTGACATGGAGAGGGATTACGTGACACTAGATAAAAGATATCCCAGGCTTTTTGTGCCTTCTGAGT TCTCGAAGgtttctgttattctatctcccaattattatctaatccttagtggagttctaaatgattgttaacctcaaatgtactatatgtttcagGTTGT TGTGAACTGGCCGAAACAGAAGCTTACACTTTCTATGCATACTGCTGTGAGgtgaattattctgcttcttatttacattttgtcagtcttaggattgtaa tccttcttaactggtttaaatagatctgttctggatttttgtttcccttgcccagtccgtattgtagagttacacacattattcaagttttgtggattca cttttgttatatactatctagttaaatgtatttgtagacctaaccatctttttttgaggacgacagTTTTGAGCATGATTACATTGAAGATGGTGGAGCT GATGTGAAAAGTACTTCCACTAAGCCTTTAGCTTTGAAAACTGGAGGAAAAAGTGTTTGGAACGCCAAGgttggctgtttttttctttctcattgataaa gattgcctctttaattatgtcattgctcatgtttgcacgatgtatcattgctgctattgtttcggagtatattgaaagaattgctcatgtgttatgggtt ttatgtgctgttcagATGGTTTTGATGAGCGGGCTGAGCAGGACTGCTCTGGAAGATCTTGCTTCAGATAAATTCTTTGAGGATCGTATACCTCATATAT GCAACATATTAAAATTCGCTGTTCTTAAAAAAGATCATTCATTCATGGCGATTGGTGGTTCCTGGGATCCCACAGATGGCATGGACCCATCAGTTGATCA GTCTTCCTTAATTCAGACAATGCTGAGgtttgtctcttcacgtattcttttgtcattctttgctgccgttttgttcattgtctgagacttgaaaaacctt ttcctttgcagACACTCAAAGGATAAGCTTCATCTTGATCTGAGTAACTGCCGTCACTGGAATCCATTCCTAGAGgtaggttttccttctcttggtttaa gactgcattgagatgttggacgtgtggggacattacacttgagtattgtagctaagatagtatatataccgtacaatctctcttattttctataggtaga ggtcgttgaagatgatatgatattggtttatccagagatttgctctatgaatacttgcaaaaattgttaatttgtgtcctgttttactgcagtttcactt ttttgtcaatatggtagacctaggataagttataagctaacaaagcaatgttactttcttgccagtttatatggaaatctaagtagcttagctttgcctc tcttttttggaattgacagATACATTATGACAGAGTTGGTACAGATGGAGTGTTTAGCTACAAAGAGATCACAGTACTTTTTGTCCCCGATTTATCAGAA TGTCTTCCTTCATTTGATGTTTGGAGAACCCAATGGTTGGCACACAGGAAAGCTCTTACTGAAAGAGATCGACTACTCTCTCAGGAGGTTAAGAAAGATA CTGTTGAAGTAACCAAGGATGCAGAGAAAAAGTCACCAGGAGATACTTCCGGCACTCCGACAACTGGAACTAAGAAGACTGTTAAAAAGATCATTAAAAG AGTTGTTAAGAGGCCTGTCAACGATGGAAAAGCAACTGGTATGAAAGGTGAGAAGTCGGATGTTCCTGAACATGTTGCCATACCAGAGACCACAGTCCCA AAA►GAAGAGTCCACTGGTACATCTTCTAACAAAAAAAT►AGTGAAAAAGGTAGCTGAAACTGGAGATACCTCAGATCCCAGTGCTAAGGCTAATGAGCA GACTCCTGCAAAGACAATTGTAAAGAAAAAAATTATTAAAAGGGTGGCTAAAAGGAAGGTTGCTGAAATAGACAACAAAATGGACGGTGACTCCAAGAAA GACGGAGATAGTGATGAGAAAAAGGTGATGGAGGTAGGCAAGAAATCCTCTGATTCAGGTAGTGTGGAGATGAAACCGACGGCCGAATCTTTAGAAGATG TGAAAGACGAGAATGCCTCCAAAACTGTGGATGTAAAACAGGAAACAGGATCTCCGGATACTAAGAAAAAGGAGGGTGCCTCTAGTTCAAGCAAGAAAGA CACTAAGACAGGTGAAGACAAGAAGGCTGAAAAGAAAAACAACTCAGAGACTATGTCTGAGGGGAAGAAAATTGATAGGAATAATACTGATGAGAAAGAG GTAAAAGAAAAGGTTACCGAGAAAGAGATAAAAGAGAGAGGTGGAAAAGATGAGTCCAGGATTCAAGTGAAGGACAGGAAAAAGTGTGAGGAACCTCCTC GCGCTGGATTTATTCTACAGACAAAACGGAACAAAGACTCCAAAgtaggtggacaggaaattagaagtttcattacatttggtaatggctatattatggt cgtaactgctttttttttggcagTTGCGTTCACTTTCGGCCTCTTTGGATTCGCTCTTGGATTACACTGACAAGGACCTTGATGAGTCATCATTTGAGgt ttgtttttcccttacgttttgcttagcctgttttcgttttctttatactggaacttagtgtaccacattttgttgttacatctgaatagttttcatcaaa ctatcttctatgttcttgcagATTTCATTGTTTGCGGAATCGCTATATGAGATGCTGCAGTATCAAATGGGTTCCCGTATCTTTGAATTTCTCAAAgtta gtttttaattgatctttgacgttattgtgtccgagtcgcatgaacagttttcttatacttaattttttgtttccttcaagAAACTACGTGTAAAAATTGT GAGGCAAAGAAATCAACGGAAGAGGCATCAGGAGGAGTTGTCTGTCAAGCAAAACGAAGCAAAATCCCAAGATAAGCGTCAAAAGACAGCTGAACATGAA GACAAGGAAGCCTCGGTGATAAGCGAATCTGCTCCTGGGAAGGATGATAAAGAAACTTCAGGCAAGGAAACCGTGGACGGTAGCCGGGAAATTGCAGATA AGGAAGCTGTAGCAAAGACCAAAGAAACTTTGGGCAGTAAAGAAGTTACTGTGGGTGAAGCTGTTAATATGGAAGTGGAGAATCAGGATGAGGAGGATGA CGATGGTGATGACGACCCAGAGGAAGATCCTGAGGAGGATCCTGAAGAAGACCCTGAAGAAGATCCGGAAGAAGATCCAGAAGAATGCGAGGAAATGGAC GTTGCAAATACTGAGCAAGAAGAGCCTGCTGAAGAGgtatgatttactcatttgactctttcaaattgaatccaacaacaagatgttttcttcataaatc ttctcattttgtttcatgtctcttcttcagCCGCAGAAGAAAGAAGAAAACCTTGAGAAAACTAGTGGCACTGTTGCTGATCCTATAACTGAAGCCGAAA CTGATAATAGAAAAGAAGAAAGAGGTCCTAACGACTCAAAAACTGAAATCAAACCCAAGTCGGAAACGGAAAAGCACGGGAAACAAGATGGAGGAACATC TGATGCAGCAAAACGAGAAGAAACAGTTGATAAAGAGCTGTTGCAGgtaaataaataatccctacaaaacttgagaaatcggtttaaatgatactgcggt taaggtgctaaatctttcttcactttgtttctttggctcagGCTTTCAGATTTTTTGACCGTAACCAGGCAGGCTATGTTAGGgtaagaagaagactaat ttgtcttgtacataaagccatctcatagtctctgtgaatgcagctgaagtactgtttcgtgtaattttacagGTTGAAGATATGAGAGTAACCATTCACA GCTTGGGAAAGTTTCTATCTCACCGTGAAGTCAAGgtaaatgtagagttttgtcatcattcttttaaacacatagaattgtgtcaattgaataaaagaat gtgtaaatgatgttgcagGAACTTGTGCAGAGCGCTTTGTTAGAGAGCAACACTGGAAGAGATGATCGAATTTTATACAATAAACTTGTTAGATTGTCTC TATAGaaaacaaaatacttctaataatgttctcgtcttctgtctttggaacttcctgagacattgtttgtttcctcagtagtttaattttcgactgtttt gaatcaacaacaaattcctattgttttcattgataataacaatggattcacgatcgaggaacttgtacaataaccagtaatcttgcgagtttcttttttt ttccatgaataataataccaaaaaattagatgtttaaggttttgttagattctacataatctaatatgctcttatatcataattaaattaataattaatc ccacgtcaaacaaaattagaagattacagaaaatgttataaactttgcatcgaaaaatacaaatcaaggaacaaaaggagtatattagtatattgctaaa gaagtttctagaaatatatatatcttccactaaaccctagttaaaataggatttgagtctattttccttatttctttgtgagaaaaggaaacaacatgaa accc
Border_1 (57679_LB1D)
TTCCTGCAGACATAATCTCTTCTTATTGGCTTAATCGGTGAAGAACGCCTTCAGGTATAACAGAAATAAGGTTAGTGCCTGGTGCAGGAACATAAAATGC
CCTGTATTCCAGATGAAGAACGTGACAGAGATCAAAAATAAAACCTAATTGATGCTTCACGATGGTGTGCATCCCGCCGCAAAGAGGAACTACGTGCATC
CCTAGAAATAGATTTGGGCACTGGAGTCCGCTCCTTTGTGTCCTTGGACGTAGCTCTTGCTGTTGGAGTCCGATCTCGTTTTATTTCGAGAGCACGTTTT
CGCTCACGTTCTCTTTCTCCTTGTCTTTCCTTCTCCCGTCTCTCCAATATGCGTTCCCTCTCCCGGTCCCTAGCTCTTTGCCTTTCTCGTTCCCTCTGAC
GCTCTCGTTCTCTGTCATGTTCGCGCTCCCTCTCTCGTTCTCGCTCCTTATCTCTGGCGCGTTGATCCTCACGACGACGCTCTTCTTCTCTTAGATCAAA
CTCCCTGAGATAACTTGCCCGGTCACCTTTCCGGAGATCATCAACACGAGGAGCAGCGCCAGTACCACGAGCCAGCATGCCACCAGGGTAGTCCAAGTCG
AGAGACGCTGCACTATGGATACCTTTCCCGGTGCCATAATCCCTGCCTGGAGGTAAGCTACCAA
| Start of BLAST Alignment: | NT 1964 / Exon 6 of 19 (Exon 1 in 5’ UTR) |
| First 15 bp Perfect Match: | NT 1962 / Exon 6 of 19 (Exon 1 in 5’ UTR) |
BLAST Details: Query Sequence: 57679_LB1D Length: (664 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g03150 68415.t00234 ATP/GTP-binding protein family con... 3287 3.0e-143 1 At3g31161 68416.t03646 pseudogene, hypothetical protein 282 5.9e-07 1 At2g40650 68415.t04614 pre-mRNA splicing factor PRP38 fam... 256 0.0020 1 At1g20920 68414.t02345 DEAD box RNA helicase, putative si... 228 0.048 1 >At2g03150 68415.t00234 ATP/GTP-binding protein family contains ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017 Length = 7233 Minus Strand HSPs: Score = 3287 (499.2 bits), Expect = 3.0e-143, P = 3.0e-143 Identities = 659/661 (99%), Positives = 659/661 (99%), Strand = Minus / Plus Query: 663 TGGTAGCTTACCTCCAGGCAGGGATTATGGCACCGGGAAAGGTATCCATAGTGCAGCGTC 604 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1684 TGTTAGCTTACCTCCAGGCAGGGATTATGGCACCGGGAAAGGTATCCATAGTGCAGCGTC 1743 Query: 603 TCTCGACTTGGACTACCCTGGTGGCATGCTGGCTCGTGGTACTGGCGCTGCTCCTCGTGT 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1744 TCTCGACTTGGACTACCCTGGTGGCATGCTGGCTCGTGGTACTGGCGCTGCTCCTCGTGT 1803 Query: 543 TGATGATCTCCGGAAAGGTGACCGGGCAAGTTATCTCAGGGAGTTTGATCTAAGAGAAGA 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1804 TGATGATCTCCGGAAAGGTGACCGGGCAAGTTATCTCAGGGAGTTTGATCTAAGAGAAGA 1863 Query: 483 AGAGCGTCGTCGTGAGGATCAACGCGCCAGAGATAAGGAGCGAGAACGAGAGAGGGAGCG 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1864 AGAGCGTCGTCGTGAGGATCAACGCGCCAGAGATAAGGAGCGAGAACGAGAGAGGGAGCG 1923 Query: 423 CGAACATGACAGAGAACGAGAGCGTCAGAGGGAACGAGAAAGGCAAAGAGCTAGGGACCG 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1924 CGAACATGACAGAGAACGAGAGCGTCAGAGGGAACGAGAAAGGCAAAGAGCTAGGGACCG 1983 Query: 363 GGAGAGGGAACGCATATTGGAGAGACGGGAGAAGGAAAGACAAGGAGAAAGAGAACGTGA 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1984 GGAGAGGGAACGCATATTGGAGAGACGGGAGAAGGAAAGACAAGGAGAAAGAGAACGTGA 2043 Query: 303 GCGAAAACGTGCTCTCGAAATAAAACGAGATCGGACTCCAACAGCAAGAGCTACGTCCAA 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2044 GCGAAAACGTGCTCTCGAAATAAAACGAGATCGGACTCCAACAGCAAGAGCTACGTCCAA 2103 Query: 243 GGACACAAAGGAGCGGACTCCAGTGCCCAAATCTATTTCTAGGGATGCACGTAGTTCCTC 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2104 GGACACAAAGGAGCGGACTCCAGTGCCCAAATCTATTTCTAGGGATGCACGTAGTTCCTC 2163 Query: 183 TTTGCGGCGGGATGCACACCATCGTGAAGCATCAATTAGGTTTTATTTTTGATCTCTGTC 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2164 TTTGCGGCGGGATGCACACCATCGTGAAGCATCAATTAGGTTTTATTTTTGATCTCTGTC 2223 Query: 123 ACGTTCTTCATCTGGAATACAGGGCATTTTATGTTCCTGCACCAGGCACTAACCTTATTT 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2224 ACGTTCTTCATCTGGAATACAGGGCATTTTATGTTCCTGCACCAGGCACTAACCTTATTT 2283 Query: 63 CTGTTATACCTGAAGGCGTTCTTCACCGATTAAGCCAATAAGAAGAGATTATGTCTGCAG 4 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2284 CTGTTATACCTGAAGGCGTTCTTCACCGATTAAGCCAATAAGAAGAGATTATGTCTGCAA 2343 Query: 3 G 3 | Sbjct: 2344 G 2344 >At3g31161 68416.t03646 pseudogene, hypothetical protein Length = 224 Minus Strand HSPs: Score = 282 (48.4 bits), Expect = 5.9e-07, P = 5.9e-07 Identities = 116/183 (63%), Positives = 116/183 (63%), Strand = Minus / Plus
Border_2 (57679_RBU)
GCCCTGCGNGGAAATGTTACCCGCTCCATTTNCNAACACATAAANAGTGAAAAAGGTAGCTGAAACTGGAGATACCTCAGTATCCCANTGCTAAGGCTAA
TGAGCAGACTCCTGCAAAGACANTTGTAAAGAAAAAAATTATTAAAAGGGTGGCTAAAAGGAAGGTTGCTGAAATAGACAACAAAATGGACGGTGACTCC
AAGAAAGACGGAGATAGTGATGAGAAAAAGAATGAGAAAGCTGAAAGGATTATCTTGATAAATGGCAAGGCTGATATAGTAATTGAGGAGGGACTAAGAG
ATGTCCAAGTCAATCAATANGAAAACAACGAGAATGCANGAATGGAAAGGAAGATGAGGNAACCCTGAGGAGNAGGTAACACTGANAGTTTCCATGGCAT
ATGCTAGCTTGCATAAACTGAAGGNGGCGAAACGACNATCTGATCCAAGCTCAAGCNAGCTCCANCTTTTGTTCGCCTTCAGACGAGGG
| Start of BLAST Alignment: | NT 4392 / Exon 12 of 19 |
| First 15 bp Perfect Match: | NT 4427 / Exon 12 of 19 |