At3g18290 SYNGENTA 60578.1
Genomic Sequence (from TAIR)
tcataaaatctcaaagccaaattcatcttttcttttgaaagtgctccctcaaaagctaaacctcaaacatataaaatagcaaattcattttaacaaaagc ttaatgaattccacgtaagcaattacataacgtttttgcccctagtcagtagagtccctccttctaactccgagaaccagcgtccatgtctcgcggacca aatgcgttcgtaggtaagacgcttgcacgtgtcgagatgtaatcggtcacgtgccaacctgggttggttgcatcagcatccgacgtggcgatgtgaatgg ccacgtgctacaaaacctatgtatagaaacacccacccaatccccaagcacttttattcattttctataaaaaaatttacaaggatcgtataatactact aacagttttttttaaatattttccagataaacattaataaaacgataaaaggcaaaaaataaaaaagaaaagaaagcaaaagcaaaatcaaaatcgatat atcagacaacgcctcgacctttctttctttttttccttctcatcgtctccgttgaacaacaccacacaaacaccagaagaacaccagataattcccatgg tgaaccgagctcagatttgaaaattgaaggtcgtagacgaatcataaggaaagagagaagtggtttgagatttcttttttgacggacgaaaacggagata agctttgggggaaATGGCGACGCCGTTACCAGATTTTGAGACGGCGAGAGGCGGCGGAGCAGTGGCGTCTTCTTCAACCACGGTTCTTCCGAGTTCTGTG TCTTCTTCTTCTTCTTCATCTCGTCCGTTGCCTGTGGCGAATTCGTTCTCGGATGACGCGGAAGAGATTTCTCCGATCCTGATTTTCTTGTTCTTTCATA AGGCAGTATGTAGTGAGCTTGAAGCTCTTCATAGATTGGCTCTTGAGTTTGCTACTGGTCACCATGTCGATCTCCGGCTGCTTCGTGAACGGTACCGGTT CTTGAGATCCATCTATAAGCATCACTGCAATGCCGAAGACGAGgtaatgcgaaaacctggtcctcttcttttaaatttgatctcatcatgttctgaaaac tgctgaattagaatttggaaccatctctacttggattttgaactcaatacatatagctgcaaatttgtgtaaatctgacttgattttatcttaaacgaat tgtaagtctcaattagtctcttgctgatcatcctattgattctatgagtgcgttgtagatagggaatctattgcaacatatttgtattgctatgttatga ggaagaattgttgacagttgcaaatctgtggatgtagGTGATATTTTCAGCTCTTGACATACGTGTGAAGAATGTAGCGCAAACATATTCTCTTGAACAC AAGGGGGAAAGCAATCTTTTCGATCATCTCTTTGAGCTGCTGAATTCTGCCACGGAAACTGATGAAAGTTACCGAAGGGAGTTGGCTCGTTCTACCGGAG CACTTCAGACTTCTGTTAGCCAGCACTTGGCGAAAGAACAGAAACAGgtatttttttcttttccttcacatcacagatgtattatctctgttgttttcta ttaacacagatcgaatatttagcattacgcattggcctttattaattacgggttgttcttggcttgttgatagGTGTTCCCCTTACTTATTGAGAAATTC AAGTATGAGGAGCAAGCTTACATAGTCTGGCGGTTTCTCTGCAGTATTCCTGTGAATATGCTTGCTGTGTTCTTGCCATGGATTTCTTCTTCCATTTCAG TAGATGAAAGCAAGGAGATGCAAACGTGCTTAAAGAAGATAGTTCCAGGCGAGAAGCTCCTTCAGCAGgtaagttttgaattaagatccaactttctaag ttgaaagactttggcttgttgattgatattttccttttgaagGTTATTTTCACCTGGCTGGGAGGGAAAAGCAATACCGTGGCTTCGTGTCGCATTGAAG ATTCTATGTTCCAGTGCTGTCTAGATTCTTCTAGCAGCATGCTTCCTTGTAAAGCAAGTAGAGAACAGTGCGCATGTGAGGGTTCCAAGATTGGGAAGAG AAAGTACCCAGAGCTTACTAACTTTGGCTCATCTGATACTCTGCACCCAGTTGATGAGATAAAGCTCTGGCACAAGTCAATCAACAAGGAGATGAAAGAA ATAGCCGATGAGGCTAGGAAGATTCAGCTGTCTGGAGATTTTTCGGATTTATCGGCATTTGATGAACGCTTACAATATATTGCTGAAGTGTGCATCTTCC ATAGgtatttgttgtatcctttcatttacaatgaaaacagaataatctcaattttgctattgtttattggctatcttttgtgggactattcaatgttgat ttattgaggtaaataactagatttgttttataaagttgatgttgatggccactaaaacacgtttgccagctgtgatgtgttttactttcaagtgatatgg atgttgtttatcctttactcttctcatgcttaagcacgtttctgcattagagtgttatcattcgaaaaagagttttatcaaatgttcatatctacataca actttttttttcttctgacagagattgaattgtcattggactatttttgagatgatctgttcttttctcgtgcagTCTTGCAGAGGACAAGATCATATTT CCAGCTGTAGATGGAGAGTTTTCATTTTCTGAAGAGCACGATGAAGAAGAAAATCAGTTTAACGAGTTTCGATGCTTAATTGAAAATATCAAGAGTGCTG GAGCCTCTTCTACTTCCGCTGCCGAATTTTACACTAAGCTGTGCTCACATGCTGATCAAATAATGGAAACTATTCAAAGACACTTCCATAACGAGGAAAT TCAGgtgaa►ctattgcttttaa◄gtgctgtatgatattgtaaacaggtgaaa►ctat◄gaaagtttggcataagatcatttgatactatatgctatgaa gattcaagataccaatttcaggatgtcaactaacttgtagtggttgcagGTGCTACCCCTTGCACGAAAGAACTTCAGCTTCAAAAGACAACAAGAACTT CTCTACCAAAGCCTGTGTATAATGCCATTGAGACTAATTGAACGAGTTTTGCCATGGTTGACGGCATCTTTAACAGAAGATGAAGCTAAGAATTTTCTGA AGAACTTGCAAGCTGGAGgtactatctactgtactgccttaaacttaaccttctttcaaattattagctactcacaattttgcataattacatgcttttt cttgtggcctcagCACCTAAATCGGATGTTGCTCTCGTTACTCTTTTCTCTGGTTGGGCTTGCAAAGGACGCAAAGCCGGGGAATGCTTGTCTCCAAACG GGAATGGTTTATGCCCTGTGAAAACACTAAGCAACATTAAAGAAGTCAACCTTCAGTCATGTAATGCTTGTGCGTCTGTTCCATGCACGAGTAGGAGTAC AAAATCGTGTTGCCAGCATCAAGATAAAAGGCCAGCTAAGCGAACTGCTGTATTGTCTTGTGAAAAAAAAACCACCCCTCACTCGACAGAAGTTGCAAAT GGGTGCAAGCCATCTGGAAATGGTAGGTCATGCTGTGTTCCGGATCTCGGAGTTAACAATAATTGTCTGGAACTTGGTTCTCTTCCAGCAGCTAAAGCTA TGAGATCTTCTTCGCTAAACTCTGCTGCACCCGCTCTTAATTCCAGCCTCTTTATTTGGGAAATGGATAGTAACAGCTTTGGTACTGGACATGCTGAGCG GCCAGTTGCTACAATATTCAAGTTTCACAAGGCCATAAGCAAAGATCTAGAGTTTCTTGATGTTGAATCTGGAAAGCTCATTGATTGCGATGGAACATTT ATTCGTCAATTTATCGGTCGATTTCACCTACTCTGGGGTTTCTACAAGGCTCATAGTAATGCAGAAGATGACATCCTATTTCCAGCTCTAGAATCGAAGG AGACACTTCACAATGTCAGTCACTCTTACACGCTCGACCATAAACAGGAGGAGAAGTTGTTTGGAGATATTTATAGTGTCCTTACCGAACTTTCAATTCT TCATGAGAAGTTACAGAGTGATTCTATGATGGAGGACATAGCTCAAACTGACACTGTTCGGACGGATATCGATAACGGTGACTGCAACAAGAAATACAAT GAACTGGCTACAAAGCTACAGGGGATGTGCAAATCCATTAAAATCACTTTGGATCAGCACATTTTCTTGGAGGAACTGGAGCTTTGGCCTCTATTTGACA AACACTTCTCCATTCAAGAGCAAGACAAGATTGTGGGTCGTATAATCGGAACAACGGGTGCTGAAGTTCTTCAATCTATGTTACCATGGGTGACGTCTGC CCTTTCTGAAGATGAGCAAAACAGAATGATGGATACCTGGAAGCAGGCAACCAAGAACACAATGTTCGATGAATGGCTTAATGAATGCTGGAAAGGATCA CCCGACTCATCCTCAACAGAAACATCCAAACCTAGTCCACAGAAAGgtaaaagcattgcttagctatttctcaccaacttaatatctaacttgtttaatg taaccttagatgtttcttctttggacttcataactcatacttaagctggcaactatagtttctctgtgctaagtttgttttgcttatgtcaagtttattt tccatatagATAATGATCATCAAGAAATCTTGGACCAAAGTGGTGAACTATTTAAGCCAGGGTGGAAAGATATTTTCCGCATGAACCAGAATGAACTAGA GGCTGAAATCAGGAAGGTCTATCAGGACTCAACACTTGATCCGAGGAGAAAAGATTATCTCGTACAGAATTGGAGGACCAGgtcagatttttttcactat ttccacgcatggatcctttattccacattgtcatgcatacagcatgccagacataaatctagaaccccccaaagagataatacatttccctgtattactt gaacttcttttgcaatgcggaagagtataagtggtgctcctgtcctttacagtttcccaatccaaaataacgtgctcagtttattttccactgtgcatgt atatgtgtccttgattgagcaatcttctgatatagagaacctataatctcattcacatgtccctcatacccgaatcctatttgttctagagtaacattta ttttaaaattcttctgttggtgcatttatcagTCGATGGATTGCGGCTCAGCAAAAGTTACCTAAGGAAGCAGAAACTGCAGTAAATGGTGATGTTGAAC TTGGATGTTCCCCGTCTTTTCGGGATCCCGAGAAGCAGATATATGGATGCGAGCATTACAAGCGTAACTGCAAGCTTCGAGCTGCTTGTTGTGATCAGTT GTTCACTTGTAGGTTTTGCCATGACAAAGTAAGCGACCACTCCATGGATAGgtaagatcttatattctaaagccagtttcccctaattaaattgaaactt ctttgttcgtattttttttctctctctgtgatatgtaattttatatttgaaacatattacagAAAATTGGTGACGGAAATGCTCTGTATGCGGTGCCTCA AGGTGCAACCTGTTGGTCCCATCTGCACAACACCTTCATGCGACGGATTCCCAATGGCAAAGCACTATTGCAGTATTTGCAAACTTTTTGATGATGAAAG gtaaacaaaacccaacagtttgatgcataaacgaatcaatttaccactgtcaaaaatcaaacttcagaagctattctaaccgtgagaaacaattatctgc attcagGGCCGTTTACCACTGTCCATTCTGCAACCTTTGCCGGGTCGGGGAAGGACTAGGAATCGATTTTTTCCATTGCATGACATGTAACTGTTGCCTA GGGATGAAATTAGTAAACCACAAGTGCCTCGAGAAGAGCCTCGAGACAAATTGCCCCATCTGCTGCGAATTTCTTTTCACATCGAGTGAAGCAGTTAGAG CCTTACCATGTGGTCACTACATGCACTCAGCTTGCTTCCAGgtttgcaaatctctctttctctcattaaacttaaattaacttttaacgcctaaaatcaa aacacttgctgttactctggtctttcagGCTTACACTTGCAGTCACTACACATGTCCAATCTGTGGAAAATCATTAGGAGATATGGCTgtaagatgatcc ccgcccctcaagagtgtaacatgcatatcacatcatgcaaatattgtttactgaactgtttcttcttcgtttcttttgcgaactccacagGTTTATTTTG GTATGCTTGATGCACTGTTAGCTGCAGAAGAACTTCCAGAGGAATACAAAAATCGCTGTCAGgtgagaaacactaaaactgctgcgtcttgactatttct tttagtctagtcatttcatgacacacatacacaaatgtttcagGACATTCTATGTAATGATTGTGAACGCAAAGGAACTACACGGTTCCATTGGTTGTAC CATAAATGTGGTAGCTGTGGTTCTTACAATACCCGGGTGATCAAGTCCGAAACAATCCCCCCGGACTGCTCAACCTCATCCTGAaaacaccaagaggttt cactcacttgttactctctttttttctttccttttttcgggttttaccctctgtttcgcacaacaatgtgaagaagcccgttgatagattttttttttgt atagtctctgagatattaagattttgaagagtctttatttaggttaccttactatacattttggcttgaacaaagccaaaaaatttcgtttgtttctgga acatcccataccgtcatcctctttcttccacataatccgctatttgtttttgcattaagctgagactttttctttgaagagtgtaaatagttaacaattt ttaatagaaaacttttttccactcttcgtatctgactatactatttcttattgttgatgtcaagaaaaaaaaaatctacacttcagagtttttaaatttt cgcgagggaaaataatcagggttggttaaaagaaaacgacatgttttagtttgtttatttaaccgtactatcagaaatcaaactaaaatcgaaaagctga caaa
Border_1 (60578_1_RBD)
GTAACGAGAGCAACATCCGATTTAGGTGCTGAGGCCACAAGAAAAAGCATGTAATTATGCAAAATTGTGAGTAGCTAATAATTTGAAAGAAGGTTAAGTT
TAAGGCAGTACAGTAGATAGTACCTCCAGCTTGCAAGTTCTTCAGAAAATTCTTAGCTTCATCTTCTGTTAAAGATGCCGTCAACCATGGCAAAACTCGT
TCAATTAGTCTCAATGGCATTATACACAGGCTTTGGTAGAGAAGTTCTTGTTGTCTTTTGAAGCTGAAGTTCTTTCGTGCAAGGGGTAGCACCTGCAACC
ACTACAAGTTAGYTGACATCCTGAAATTGGTATCTTGAATCTTCATAGCATATAGTATCAAATGATCTTATGCCAAACTTTCATGTTTAAAAGCAATAGT
TCACCTGAATTTCCTCGTTATGGAAGTGTCTTTGAATAGTTTCCATTATTTGATCAGCATGTGAGCACAGCTTAGTGTAAAATTCGGCAGCGGAAGTAGA
AGAGGCTCCAGCACTCTTGATATTTTCAATTAAGCATCGAAACTCGTTAACTGATTTTCTTCTTCATCGTGCTCTTCAGAAAATGAAAACTCTCATCTAC
AGCTGGAAATATGATCTTGGGCNTNTGNCAAGGCTGCCCGAGAAAGGACAGATCCNTTCNAAAAAAGTCCAAGGCCATTCNATNTNTGTCAGAAGAAAAA
AAAGTTGTATGTAGATATGACCTTTGATAAACTCTTTTCGGATGATACCCTCTAATGCAGAAACGTGCTTAAGCATGAGAAGAGTAAAGGATAACCAACA
TCCATATCACTTTGAAAGTAAACACATCACAGCTGGCAAACGTGTTTTAGTGGCCATCAACATCAACTTTATAAAACAAATCTAGTTATTTACCTCAATA
AATCAACATTGAATAGTCCCACAAAAGATAGCCAATAAACAATAGCAAAATTGAGATTATTCTGTTTTCATTGTAAATGAAAGGATACAACAAATACCTA
TGGAAGATGCACACTTCAGCAATATATTGTAAGCGTTCATCAAATGCCGATAAATCCGAAAAATCTCCAGACAGCTGAATCTTCCTAGCCTCATCGGCTA
TTTCTTTCATNCTCCTTGTTGATTGACTTGTGCCA
| Start of BLAST Alignment: | NT 2242 / Intron 5 of 13 |
| First 15 bp Perfect Match: | NT 2209 / Intron 5 of 13 |
BLAST Details: Query Sequence: 60578_1_RBD Length: (1135 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g18290 68416.t02071 zinc finger protein-related weak a... 3366 5.6e-231 2 At1g18920 68414.t02102 hypothetical protein contains Pfam... 221 0.25 1 At1g74770 68414.t07931 expressed protein 195 0.99 1 At5g57000 68418.t06603 expressed protein similar to unkno... 193 0.992 1 >At3g18290 68416.t02071 zinc finger protein-related weak alignment to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING finger) (2 copies) Length = 6331 Minus Strand HSPs: Score = 3366 (511.1 bits), Expect = 5.6e-231, Sum P(2) = 5.6e-231 Identities = 736/795 (92%), Positives = 736/795 (92%), Strand = Minus / Plus Query: 1135 TGGCACAAGTCAATCAACAAGGAGNATGAAAGAAATAGCCGATGAGGCTAGGAAGATTCA 1076 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1768 TGGCACAAGTCAATCAACAAGGAG-ATGAAAGAAATAGCCGATGAGGCTAGGAAGATTCA 1826 Query: 1075 GCTGTCTGGAGATTTTTCGGATTTATCGGCATTTGATGAACGCTTACAATATATTGCTGA 1016 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1827 GCTGTCTGGAGATTTTTCGGATTTATCGGCATTTGATGAACGCTTACAATATATTGCTGA 1886 Query: 1015 AGTGTGCATCTTCCATAGGTATTTGTTGTATCCTTTCATTTACAATGAAAACAGAATAAT 956 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1887 AGTGTGCATCTTCCATAGGTATTTGTTGTATCCTTTCATTTACAATGAAAACAGAATAAT 1946 Query: 955 CTCAATTTTGCTATTGTTTATTGGCTATCTTTTGTGGGACTATTCAATGTTGATTTATTG 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1947 CTCAATTTTGCTATTGTTTATTGGCTATCTTTTGTGGGACTATTCAATGTTGATTTATTG 2006 Query: 895 AGGTAAATAACTAGATTTGTTTTATAAAGTTGATGTTGATGGCCACTAAAACACGTTTGC 836 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2007 AGGTAAATAACTAGATTTGTTTTATAAAGTTGATGTTGATGGCCACTAAAACACGTTTGC 2066 Query: 835 CAGCTGTGATGTGTTT-ACTTTCAAAGTGATATGGATGTTGGTTATCCTTTACTCTTCTC 777 |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||| Sbjct: 2067 CAGCTGTGATGTGTTTTACTTTCAA-GTGATATGGATGTTGTTTATCCTTTACTCTTCTC 2125 Query: 776 ATGCTTAAGCACGTTTCTGCATTAGAGGGT-ATCATCCGAAAA-GAGTTT-ATCAAAGGT 720 ||||||||||||||||||||||||||| || ||||| |||||| |||||| |||||| || Sbjct: 2126 ATGCTTAAGCACGTTTCTGCATTAGAGTGTTATCATTCGAAAAAGAGTTTTATCAAATGT 2185 Query: 719 -CATATCTACATACAACNNNNNNNN-CTTCTGACANANATNGAATGGCC-TTGGACTTTT 663 |||||||||||||||| ||||||||| | || |||| | | ||||||| || Sbjct: 2186 TCATATCTACATACAACTTTTTTTTTCTTCTGACAGAGATTGAATTGTCATTGGACTATT 2245 Query: 662 TTNGAANGGATCTGTCCTTT-CTCGGGCAGCCTTGNCANANGCCCAAGATCATATTTCCA 604 || || ||||||| |||| |||| |||| |||| || | | | ||||||||||||||| Sbjct: 2246 TTTGAGATGATCTGTTCTTTTCTCGTGCAGTCTTG-CAGAGGAC-AAGATCATATTTCCA 2303 Query: 603 GCTGTAGATG-AGAGTTTTCATTTTCTGAAGAGCACGATGAAGAAGAAAATCAGTT-AAC 546 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2304 GCTGTAGATGGAGAGTTTTCATTTTCTGAAGAGCACGATGAAGAAGAAAATCAGTTTAAC 2363 Query: 545 GAGTTTCGATGCTTAATTGAAAATATCAAGAGTGCTGGAGCCTCTTCTACTTCCGCTGCC 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2364 GAGTTTCGATGCTTAATTGAAAATATCAAGAGTGCTGGAGCCTCTTCTACTTCCGCTGCC 2423 Query: 485 GAATTTTACACTAAGCTGTGCTCACATGCTGATCAAATAATGGAAACTATTCAAAGACAC 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2424 GAATTTTACACTAAGCTGTGCTCACATGCTGATCAAATAATGGAAACTATTCAAAGACAC 2483 Query: 425 TTCCATAACGAGGAAATTCAGGTGAACTATTGCTTTTAAACA-TGAAAGTTTGGCATAAG 367 ||||||||||||||||||||||||||||||||||||||| || | | | ||| Sbjct: 2484 TTCCATAACGAGGAAATTCAGGTGAACTATTGCTTTTAAGTGCTGTATGATATTG-TAA- 2541 Query: 366 ATCATTTGATACTAT 352 | || ||| ||||| Sbjct: 2542 A-CAGGTGAAACTAT 2555 Score = 1927 (295.2 bits), Expect = 5.6e-231, Sum P(2) = 5.6e-231 Identities = 388/391 (99%), Positives = 389/391 (99%), Strand = Minus / Plus
Border_2 (60578_1_LBU)
AATCAATTCATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTAAACAGGTGAATCTATGAAAGT
TTGGCATAAGATCATTTGATACTATATGCTATGAAGATTCAAGATACCAATTTCAGGATGTCAA:CTAA:CTTGTAGTGGTTGCAGGTGCTACCCCTTGC
ACGAAAGAACTTCAGCTTCAAAAGACAACAAGAACTTCTCTACCAAAGCCTGTGTATAATGCCATTGAGACTAATTGAACGAGTTTTGCCATGGTTGACG
GCATCTTTAACAGAAGATGAAGCTAAGAATTTTCTGAAGAACTTGCAAGCTGGAGGTACTATCTACTGTACTGCCTTAAACTTAACCTTCTTTCAAATTA
TTAGCTACTCACAATTTTGCATAATTACATGCTTTTTCTTGTGGCCTCAGCACCTAAATCGGATGTTGCTCTCGTTACTCTTTTCTCTGGTTGGGCTTGC
AAAGGACGCAAAGCCGGGGAATGCTTGTCTCCAAACGGGAATGGTTTATGCCCTGTGAAAACACTAAGCAACATTAAAGAAGTCAACCTTCAGTCATGTA
ATGCTTGTGCGTCTGTTCCATGCACGAGTAGGAGTACAAAATCGTGTTGCCAGCATCAAGATAAAAGGCCAGCTAAGCGAACTGCTGTATTGTCTTGTGA
AAAAAAAACCACCCCTCACTCGACAGAAGTTGCAAATGGGTGCAAGCCATCTGGAAATGGTAGGTCATGCTGTGTTCCGGATCTCGGAGTTAACAATAAT
TGTCTGGAACTTGGTTCTCTTCCAGCAGCTAAAGCTATGAGATCTTCTTCGCTAAACTCTGCTGCACCCGCTCTTAATTCCAGCCTCTTTATTTGGGAAA
TGGATAGTAACAGCTTTGGTACTGGACATGCTGAGCGGCCAGTTGCTACAATATTCAAGTTTCACAAGGCCATAAGCAAAGATCTAGAGTTTCTTGATGT
TGAATCTGGAAAGCTCATTGATTGCGATGGAACATTTATTCGTCAATTTATCGGTCGATTTCACCTACTCTGGGGTTTCTACAAGGCTCATAGTAATGCA
GAAGATGACATCCTATTTCCAGCTCTAGAATCGAAGGAGACACTTCACAATGTCAGTCACTCTTACACGCTCGACCATAAACAGGAGGAGAAGTTGTTTG
GAGATATTTATAGTGTCCTTACCGAACTTTCAATTCTTCATAGAA
| Start of BLAST Alignment: | NT 2196 / Intron 5 of 13 |
| First 15 bp Perfect Match: | NT 2238 / Intron 5 of 13 |
BLAST Details: Query Sequence: 60578_1_LBU Length: (1243 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g18290 68416.t02071 zinc finger protein-related weak a... 5771 9.5e-257 1 At1g18920 68414.t02102 hypothetical protein contains Pfam... 347 4.1e-11 2 At1g74770 68414.t07931 expressed protein 285 2.7e-07 2 >At3g18290 68416.t02071 zinc finger protein-related weak alignment to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING finger) (2 copies) Length = 6331 Plus Strand HSPs: Score = 5771 (871.9 bits), Expect = 9.5e-257, P = 9.5e-257 Identities = 1177/1201 (98%), Positives = 1177/1201 (98%), Strand = Plus / Plus Query: 44 CAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTAAACAGGTGAATCTATGAAAGTTTG 103 | || || | |||||| | || | | ||| ||||||||||||| ||||||||||||| Sbjct: 2510 CTAT-TGCTTTTAAGTGCTGTATGA-T--ATT-GTAAACAGGTGAAACTATGAAAGTTTG 2564 Query: 104 GCATAAGATCATTTGATACTATATGCTATGAAGATTCAAGATACCAATTTCAGGATGTCA 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2565 GCATAAGATCATTTGATACTATATGCTATGAAGATTCAAGATACCAATTTCAGGATGTCA 2624 Query: 164 ACTAACTTGTAGTGGTTGCAGGTGCTACCCCTTGCACGAAAGAACTTCAGCTTCAAAAGA 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2625 ACTAACTTGTAGTGGTTGCAGGTGCTACCCCTTGCACGAAAGAACTTCAGCTTCAAAAGA 2684 Query: 224 CAACAAGAACTTCTCTACCAAAGCCTGTGTATAATGCCATTGAGACTAATTGAACGAGTT 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2685 CAACAAGAACTTCTCTACCAAAGCCTGTGTATAATGCCATTGAGACTAATTGAACGAGTT 2744 Query: 284 TTGCCATGGTTGACGGCATCTTTAACAGAAGATGAAGCTAAGAATTTTCTGAAGAACTTG 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2745 TTGCCATGGTTGACGGCATCTTTAACAGAAGATGAAGCTAAGAATTTTCTGAAGAACTTG 2804 Query: 344 CAAGCTGGAGGTACTATCTACTGTACTGCCTTAAACTTAACCTTCTTTCAAATTATTAGC 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2805 CAAGCTGGAGGTACTATCTACTGTACTGCCTTAAACTTAACCTTCTTTCAAATTATTAGC 2864 Query: 404 TACTCACAATTTTGCATAATTACATGCTTTTTCTTGTGGCCTCAGCACCTAAATCGGATG 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2865 TACTCACAATTTTGCATAATTACATGCTTTTTCTTGTGGCCTCAGCACCTAAATCGGATG 2924 Query: 464 TTGCTCTCGTTACTCTTTTCTCTGGTTGGGCTTGCAAAGGACGCAAAGCCGGGGAATGCT 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2925 TTGCTCTCGTTACTCTTTTCTCTGGTTGGGCTTGCAAAGGACGCAAAGCCGGGGAATGCT 2984 Query: 524 TGTCTCCAAACGGGAATGGTTTATGCCCTGTGAAAACACTAAGCAACATTAAAGAAGTCA 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2985 TGTCTCCAAACGGGAATGGTTTATGCCCTGTGAAAACACTAAGCAACATTAAAGAAGTCA 3044 Query: 584 ACCTTCAGTCATGTAATGCTTGTGCGTCTGTTCCATGCACGAGTAGGAGTACAAAATCGT 643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3045 ACCTTCAGTCATGTAATGCTTGTGCGTCTGTTCCATGCACGAGTAGGAGTACAAAATCGT 3104 Query: 644 GTTGCCAGCATCAAGATAAAAGGCCAGCTAAGCGAACTGCTGTATTGTCTTGTGNNNNNN 703 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3105 GTTGCCAGCATCAAGATAAAAGGCCAGCTAAGCGAACTGCTGTATTGTCTTGTGAAAAAA 3164 Query: 704 NNNCCACCCCTCACTCGACAGAAGTTGCAAATGGGTGCAAGCCATCTGGAAATGGTAGGT 763 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3165 AAACCACCCCTCACTCGACAGAAGTTGCAAATGGGTGCAAGCCATCTGGAAATGGTAGGT 3224 Query: 764 CATGCTGTGTTCCGGATCTCGGAGTTAACAATAATTGTCTGGAACTTGGTTCTCTTCCAG 823 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3225 CATGCTGTGTTCCGGATCTCGGAGTTAACAATAATTGTCTGGAACTTGGTTCTCTTCCAG 3284 Query: 824 CAGCTAAAGCTATGAGATCTTCTTCGCTAAACTCTGCTGCACCCGCTCTTAATTCCAGCC 883 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3285 CAGCTAAAGCTATGAGATCTTCTTCGCTAAACTCTGCTGCACCCGCTCTTAATTCCAGCC 3344 Query: 884 TCTTTATTTGGGAAATGGATAGTAACAGCTTTGGTACTGGACATGCTGAGCGGCCAGTTG 943 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3345 TCTTTATTTGGGAAATGGATAGTAACAGCTTTGGTACTGGACATGCTGAGCGGCCAGTTG 3404 Query: 944 CTACAATATTCAAGTTTCACAAGGCCATAAGCAAAGATCTAGAGTTTCTTGATGTTGAAT 1003 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3405 CTACAATATTCAAGTTTCACAAGGCCATAAGCAAAGATCTAGAGTTTCTTGATGTTGAAT 3464 Query: 1004 CTGGAAAGCTCATTGATTGCGATGGAACATTTATTCGTCAATTTATCGGTCGATTTCACC 1063 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3465 CTGGAAAGCTCATTGATTGCGATGGAACATTTATTCGTCAATTTATCGGTCGATTTCACC 3524 Query: 1064 TACTCTGGGGTTTCTACAAGGCTCATAGTAATGCAGAAGATGACATCCTATTTCCAGCTC 1123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3525 TACTCTGGGGTTTCTACAAGGCTCATAGTAATGCAGAAGATGACATCCTATTTCCAGCTC 3584 Query: 1124 TAGAATCGAAGGAGACACTTCACAATGTCAGTCACTCTTACACGCTCGACCATAAACAGG 1183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3585 TAGAATCGAAGGAGACACTTCACAATGTCAGTCACTCTTACACGCTCGACCATAAACAGG 3644 Query: 1184 AGGAGAAGTTGTTTGGAGATATTTATAGTGTCCTTACCGAACTTTCAATTCTTCAT-AGA 1242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 3645 AGGAGAAGTTGTTTGGAGATATTTATAGTGTCCTTACCGAACTTTCAATTCTTCATGAGA 3704 Query: 1243 A 1243 | Sbjct: 3705 A 3705 >At1g18920 68414.t02102 hypothetical protein contains Pfam profile PF03794: Domain of Unknown function Length = 3786 Plus Strand HSPs: Score = 347 (58.1 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11 Identities = 157/253 (62%), Positives = 157/253 (62%), Strand = Plus / Plus