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At1g75350 SYNGENTA 60944

Genomic Sequence (from TAIR)

CACGCTGAAAGTTTCTACACAGTTCCTTCCTCATactcgcagctaaaaccttcgaactgtgtacgtatgtgcgtatatatatatgtagttttgcttctct
cgagaaaaatgaagaagcgttagattgacgaagagtgtatcaacagaacaaaaggaagtctctatgtaaattaccatattacccttacatatcttcaaag
tatttagggttataaacgtaactccaatacacttcatcatcctcattctcttatccatcaatcgttacttcgtttcttctctatcaccaggaaaaaagaa
gaagatagctcctgaagacaaaaATGGCGGTTTCTCTCCCGAACTCGTTTCTTCAGATTAGCCCATGTGTTCCTTCTCTGCAATTAAGAAAGgtaagctc
gaaatcgatttctcattcttcgtctatttctcctccttccccaaaatcactaaatttgtttgtg◄tttttttttcaaaattagCCGGTGA◄TGGCGGCAG
TGAAAGGAGGAAAACAATCGGTGAGAAGAAGC►AGCAATACGG►TGGTTCAGATAACGTGTCGTAAGAAGGAATTGCATCCTGAATTCCACGAAGACGCA
AAGGTTTACTGCAATGGAGAGCTGGTGATGACTACAGGAGGAACAAAGAAAGAGTATGTGGTTGATGTATGGTCAGGTAACCATCCGTTTTACCTCGGGA
ATCGTTCGGCTTTGATGGTTGATGCTGATCAAGTTGAGAAGTTTCGTAAGAGGTTCGCTGGGCTTTCTGAGATTATGGAGATTCCTGTGCTTAAAGGAGA
AATCATTATGCCTACTAAGAAAAGTAAAGGTCCCAAAGGGAAGAAGAAATGAtgagtcttttctggtaaagcttatgtctttgaatttgttgtcttttca
attgaagtcgagatactgcttaggctgttaaaaattgtatgtgaattttcttctgaatgctattggttatgctttctttaagatctatttggtttcattg
agagtgagactaggatctcagagcaatgatacaagtagtagcgaatctcaaggacaaatctttagcttgtgagtttggcatgaatttgtgatggataata
gatagatatacactggtgagagaaacatagcaacaatgcctatgaaatggtaattgcaaatgaaagaaaggttgtggcttttgccacattttgtgataat
cttg

Border_1 (60944_LB2U)


AATTTCGCGGGTATTCTGTTTCTATTCCAACTTTTTCTTGATCCGCAGCCATTAACGACTTTTGAATAGATACGCTGACACGCCAAGCCTCGCTAGTCAA
AAGTGTACCAAACAACGCTTTACAGCAAGAACGGAATGCGCGTGACGCTCGCGGTGACGCCATTTCGCCTTTTCAGAAATGGATAAATAGCCTTGCTTCC
TATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTA
CATTAATAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGAAAAAAAAACACAAACAAATTTAGTGATTTTGGGGAAGGAGGAGAAATAGA
CGAAGAATGAGAAATCGATTTCGAGCTTACCTTTCTTAATTGCAGAGAAGGAACACATGGGCTAATCTGAAGAAACGAGTTCGGGAGAGAAACCGCCATT
TTTGTCTTCAGGAGCTATCTTCTTCTTTTTTCCTGGTGATAGAGAAGAAACGAAGTAACGATTGATGGATAAGAGAATGAGGATGATGAAGTGTATTGGA
GTTACGTTTATAACCCTAAATACTTTGAAGATATGTAAGGGTAATATGGTAATTTACATAGAGACTTCCTTTTGTTCTGTTGATACACTCTTCGTCAATC
TAACGCTTCTTCATTTTTCTCGAGAGAAGCAAAACTACATATATATATACGCACATACGTACACAGTTCGAAGGTTTTAGCTGCGAGTATGAGGAAGGAA
CTGTGTAGAAACTTTCAGCGTGGCAGGTAAATACTCTTTTCATCATCATCATCTTCTTCTTCATCT

Start of BLAST Alignment:	NT 166 / Exon 2 of 2
First 15 bp Perfect Match:	NT 141 / Intron 1 of 1

Border_2 (60944_LB1D)


AATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACA
CCACAATATATGCTAAATTTTTTAGCGTCAAGTTGGTTCAGATAACGTGTCGTAAGAAGGAATTGCATCCTGAATTCCACGAAGACGCAAAGGTTTACTG
CAATGGAGAGCTTGGTGATGACCTACAGGAGGAACAAAGAAAGAGTATGTGGTTGATGTATGGTCAGGTAACCATCCGTTTTACCTCGGGAATCGTTCGG
CTTTGATGGTTGATGCTGATCAAGTTGAGAAGTTTCGTAAGAGGTTCGCTGGGCTTTCTGAGATTATGGAGATTCCTGTGCTTAAAGGAGAAATCATTAT
GCCTACTAAGAAAAGTAAAGGTCCCAAAGGGAAGAAGAAATGATGAGTCTTTTCTGGTAAAGCTTATGTCTTTGAATTTGTTGTCTTTTCAATTGAAGTC
GAGATACTGCTTAGGCTGTTAAAAATTGTATGTGAATTTTCTTCTGAATGCTATTGGTTATGCTTTCTTTAAGATCTATTTGGTTTCATTGAGAGTGAGA
CTAGGATCTCAGAGCAATGATACAAGTAGTAGCGAATCTCAAGGACAAATCTTTAGCTTGTGAGTTTGGCATGAATTTGTGATGGATAATAGATAGATAT
ACACTGGTGAGAGAAACATAGCAACAATGCCTATGAAATGGTAATTGCAAATGAAAGAAAGGTTGTGGCTTTTGCCACATTTTGTGATAATCTTGGAAAG
TTATGGCATGAGATTAATGACTAGTGTAGGTAGTTGTTGTTGATGTGTAAGTGGTGTGTTGATTAGTTGATTGAGATCATTTTTACATAGATTTATAAGA
TGTTGAACATGATGATCATGGTCTATGTAAGTGTCTGCTGAAGTTATCAGG

Start of BLAST Alignment:	NT 207 / Exon 2 of 2
First 15 bp Perfect Match:	NT 217 / Exon 2 of 2

BLAST Details:
Query Sequence: 60944_LB2U 
Length: (866 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g75350 68414.t08008 ribosomal protein L31 family prote...  1120  9.5e-46   1
At1g75340 68414.t08007 zinc finger (CCCH-type) family pro...   765  6.4e-29   1
At3g22235 68416.t02518 expressed protein                       196  0.89      1
At2g29940 68415.t03381 ABC transporter family protein sim...   190  0.995     1


>At1g75350 68414.t08008 ribosomal protein L31 family protein similar to
           SP:O46917 from [Guillardia theta]
        Length = 740

  Minus Strand HSPs:

 Score = 1120 (174.1 bits), Expect = 9.5e-46, P = 9.5e-46
 Identities = 234/248 (94%), Positives = 234/248 (94%), Strand = Minus / Plus

Query:   581 CTCATTCTCTTATCCATCAATCGTTACTTCGTTTCTTCTCTATCACCAGGAAAAAAGAAG 522
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:     1 CTCATTCTCTTATCCATCAATCGTTACTTCGTTTCTTCTCTATCACCAGGAAAAAAGAAG 60

Query:   521 AAGATAGCTCCTGAAGACAAAAATGGCGGTTTCTCTCCCGAACTCGTTTCTTCAGATTAG 462
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    61 AAGATAGCTCCTGAAGACAAAAATGGCGGTTTCTCTCCCGAACTCGTTTCTTCAGATTAG 120

Query:   461 CCCATGTGTTCCTTCTCTGCAATTAAGAAAGGTAAGCTCGAAATCGATTTCTCATTCTTC 402
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   121 CCCATGTGTTCCTTCTCTGCAATTAAGAAAGGTAAGCTCGAAATCGATTTCTCATTCTTC 180

Query:   401 GTCTATTTCTCCTCCTTCCCCAAAATCACTAAATTTGTTTGTGNNNNNNNNNCAAA-TT- 344
             |||||||||||||||||||||||||||||||||||||||||||         |||| || 
Sbjct:   181 GTCTATTTCTCCTCCTTCCCCAAAATCACTAAATTTGTTTGTGTTTTTTTTTCAAAATTA 240

Query:   343 GACGCTTA 336
             | || | |
Sbjct:   241 GCCGGTGA 248


>At3g22235 68416.t02518 expressed protein
        Length = 1265

  Minus Strand HSPs:

 Score = 196 (35.5 bits), Expect = 2.2, P = 0.89
 Identities = 146/251 (58%), Positives = 146/251 (58%), Strand = Minus / Plus