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At3g52590 SYNGENTA 61713

Genomic Sequence (from TAIR)

tgtctttggaccttgggaatgatagaaacgatttgttatagctactctatgtatcagaccctgaccaagatccaacaatctcataggttttgtgcatatg
aaaccttcgactaacgagaagtggtcttttaatgagagagatatctaaaatgttatcttaaaagcccactcaaatctcaaggcataaggtagaaatgcaa
atttggaaagtgggctgggccttttgtggtaaaggcctgtaacctagcccaatattagcaaaaccctagacgcgtacattgacatatataaacccgcctc
ctccttgtttagggtttctacgtgagagaagacgaaacacaaaagATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACCATCACTCTCGAGGTCGAGA
GCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGgtatcattcttcctcactcaatctggattcttctctttagctttttgaaatt
cagatctcttatcatttacttgtttctcctttaagGAATCCCTCCGGATCAGCAGAGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACTTTG
GCTGACTACAACATCCAGAAAGgtacgaaatcatccgaatccttctgttgatcatttcgatgatctgattgtataaactctaatggattgttatcatttg
taaacagAATCTACACTTCATCTTGTGTTGAGGCTTAGAGGAGGTATTATTGAGCCTTCCTTGATGATGCTTGCTCGTAAGTACAATCAGGATAAGATGA
TTTGCCGCAAgtaagtttcaatttctccctaagattgtagttttgttgattaatagttcaaagtaccaaatgtttattagtgtgttagggttttagttgt
tttaatgggaattaacttagcttctcaagccttatacaatgcgtgttgaggttataaatgttcccaatatcaaacatttccattctctaaactttgtcag
ctggtcaaatttctcatctttccagatgattttcttgaatggtacatttttgcaaatggttttgaaaatgtgttgaagcttgtatttttgattgctgaaa
catcttgtttgttggatagtttgtcatctatggtccgatctgatgtctcaatgagattattctaatgtaaatttcgcatcttttggtagGTGCTATGCTC
GTCTTCACCCAAGAGCTGTCAACTGCAGGAAGAAGAAGTGTGGTCACAGCAACCAGgtttgtttttgttacttgtttctttttggtgtttatcagctgaa
atgatatctgaacaaac◄tttttttatttgcagTTGAGGCC►TAAG►AAGAAGATC◄AAGTAGagagactcttatcaagaatcccatctcttgcttgctt
ttttttgttgtcttccctttgatagggtttgtttttcttgtttcagtgactttctatgttaaaagataatgtcagtaaaaggatttggttttctattatt
ctgaatcgattacggaagattcttgcttaattccaatctatacaagtatcgtgaaataatgaccgtttatgtgattaggagacgtgtttcattaataaaa
tataagatcaatacattgttagtagtgataaactatgtacaaattgtattgattgtaaaagaaacacaataggttccttttttctacaatatattgtgac
agactctctgttttaacgaatgaattaaatttgtcaacgaaaaaattaaagaatgatgtgaTCACTTTGCACCTTGGTTCATCTTCAGAGGCTTCTGCAT
GTTC

Border_1 (61713_RB)


CAAACTAGGATAAATTATCGCGCGCGGTGTCATCTATGTTACTAGATCGGGAATTGAGCTCGCGGCCGCCATGGCATATGCTAGCATGCATWWKYCCTGC
AGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATCAGTGTTTGTTCAGATATCATTTCAGCTGATAAACACCAAAAAGA
AACAAGTAACAAAAACAAACCTGGTTGCTGTGACCACACTTCTTCTTCCTGCAGTTGACAGCTCTTGGGTGAAGACGAGCATAGCACCTACCAAAAGATG
CGAAATTTACATTAGAATAATCTCATTGAGACATCAGATCGGACCATAGATGACAAACTATCCAACAAACAAGATGTTTCAGCAATCAAAAATACAAGCT
TCAACACATTTTCAAAACCATTTGCAAAAATGTACCATTCAAGAAAATCATCTGGAAAGATGAGAAATTTGACCAGCTGACAAAGTTTAGAGAATGGAAA
TGTTTGATATTGGGAACATTTATAACCTCAACACGCATTGTATAAGGCTTGAGAAGCTAAGTTAATTCCCATTAAAACAACTAAAACCCTAACACACTAA
TAAACATTTGGTACTTTGAACTATTAATCAACAAAACTACAATCTTAGGGAGAAATTGAAACTTACTTGCGGCAAATCATCTTATCCTGATTGTACTTAC
GAGCAAGCATCATCAAGGAAGGCTCAATAATACCTCCTCTAAGCCTCAACACAAGATGAAGTGTAGATTCTGTTTACAAATGATAACAATCCATTAGAGT
TTATACAATCAGATCATCGAAATGATCAACAGAAGGATTCGGATGATT

Start of BLAST Alignment:	NT 1008 / Intron 4 of 4
First 15 bp Perfect Match:	NT 972 / Intron 4 of 4

BLAST Details:
Query Sequence: 61713_RB 
Length: (848 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At3g52590 68416.t05385 ubiquitin extension protein 1 (UBQ...  3463  8.1e-152  1
At2g36170 68415.t04097 ubiquitin extension protein 2 (UBQ...   491  7.3e-17   1
At3g44630 68416.t04454 disease resistance protein RPP1-Ws...   183  0.080     2
At5g48630 68418.t05586 cyclin family protein similar to S...   216  0.23      1


>At3g52590 68416.t05385 ubiquitin extension protein 1 (UBQ1) / 60S ribosomal
           protein L40 (RPL40B) identical to GI:166929, GI:166930
        Length = 1297

  Minus Strand HSPs:

 Score = 3463 (525.6 bits), Expect = 8.1e-152, P = 8.1e-152
 Identities = 707/725 (97%), Positives = 707/725 (97%), Strand = Minus / Plus

Query:   848 AATCATCCGAATCCTTCTGTTGATCATTTCGATGATCTGATTGTATAAACTCTAATGGAT 789
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   316 AATCATCCGAATCCTTCTGTTGATCATTTCGATGATCTGATTGTATAAACTCTAATGGAT 375

Query:   788 TGTTATCATTTGTAAACAGAATCTACACTTCATCTTGTGTTGAGGCTTAGAGGAGGTATT 729
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   376 TGTTATCATTTGTAAACAGAATCTACACTTCATCTTGTGTTGAGGCTTAGAGGAGGTATT 435

Query:   728 ATTGAGCCTTCCTTGATGATGCTTGCTCGTAAGTACAATCAGGATAAGATGATTTGCCGC 669
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   436 ATTGAGCCTTCCTTGATGATGCTTGCTCGTAAGTACAATCAGGATAAGATGATTTGCCGC 495

Query:   668 AAGTAAGTTTCAATTTCTCCCTAAGATTGTAGTTTTGTTGATTAATAGTTCAAAGTACCA 609
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   496 AAGTAAGTTTCAATTTCTCCCTAAGATTGTAGTTTTGTTGATTAATAGTTCAAAGTACCA 555

Query:   608 AATGTTTATTAGTGTGTTAGGGTTTTAGTTGTTTTAATGGGAATTAACTTAGCTTCTCAA 549
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   556 AATGTTTATTAGTGTGTTAGGGTTTTAGTTGTTTTAATGGGAATTAACTTAGCTTCTCAA 615

Query:   548 GCCTTATACAATGCGTGTTGAGGTTATAAATGTTCCCAATATCAAACATTTCCATTCTCT 489
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   616 GCCTTATACAATGCGTGTTGAGGTTATAAATGTTCCCAATATCAAACATTTCCATTCTCT 675

Query:   488 AAACTTTGTCAGCTGGTCAAATTTCTCATCTTTCCAGATGATTTTCTTGAATGGTACATT 429
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   676 AAACTTTGTCAGCTGGTCAAATTTCTCATCTTTCCAGATGATTTTCTTGAATGGTACATT 735

Query:   428 TTTGCAAATGGTTTTGAAAATGTGTTGAAGCTTGTATTTTTGATTGCTGAAACATCTTGT 369
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   736 TTTGCAAATGGTTTTGAAAATGTGTTGAAGCTTGTATTTTTGATTGCTGAAACATCTTGT 795

Query:   368 TTGTTGGATAGTTTGTCATCTATGGTCCGATCTGATGTCTCAATGAGATTATTCTAATGT 309
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   796 TTGTTGGATAGTTTGTCATCTATGGTCCGATCTGATGTCTCAATGAGATTATTCTAATGT 855

Query:   308 AAATTTCGCATCTTTTGGTAGGTGCTATGCTCGTCTTCACCCAAGAGCTGTCAACTGCAG 249
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   856 AAATTTCGCATCTTTTGGTAGGTGCTATGCTCGTCTTCACCCAAGAGCTGTCAACTGCAG 915

Query:   248 GAAGAAGAAGTGTGGTCACAGCAACCAGGTTTGTTTTTGTTACTTGTTTCTTTTTGGTGT 189
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   916 GAAGAAGAAGTGTGGTCACAGCAACCAGGTTTGTTTTTGTTACTTGTTTCTTTTTGGTGT 975

Query:   188 TTATCAGCTGAAATGATATCTGAACAAACACTGATAGTTTAAACTGAAGGCGGGAAACGA 129
             |||||||||||||||||||||||||||||  |  |  |||  | |  ||||   | | ||
Sbjct:   976 TTATCAGCTGAAATGATATCTGAACAAACTTTTTTTATTTGCAGTTGAGGCCTAAGAAGA 1035

Query:   128 CAATC 124
               |||
Sbjct:  1036 AGATC 1040


>At2g36170 68415.t04097 ubiquitin extension protein 2 (UBQ2) / 60S ribosomal
           protein L40 (RPL40A) identical to GI:166930, GI:166931
        Length = 1163

  Minus Strand HSPs:

 Score = 491 (79.7 bits), Expect = 7.3e-17, P = 7.3e-17
 Identities = 259/406 (63%), Positives = 259/406 (63%), Strand = Minus / Plus

Border_2 (61713_AbB)


ATGGTGCAGACCGCCGGCATGTCCGCCTCGGTGGCACGGCGGATGTCGGCCGGGCGTCGTTCTGGGCTCATGGATCCACGTGTGGAAGATATGAATTTTT
TTGAGAAACTAGATAAGATTAATGAATATCGGTGTTTTGGTTTTTTCTTGTGGCCGTCTTTGTTTATATTGAGATTTTTCAAATCAGTGCGCAAGACGTG
ACGTAAGTATCCGAGTCAGTTTTTATTTTTCTACTAATTTGGTCGTTTATTTCGGCGTGTAGGACATGGCAACCGGGCCTGAATTTCGCGGGTATTCTGT
TTCTATTCCAACTTTTTCTTGATCCGCAGCCATTAACGACTTTTGAATAGATACGCTGACACGCCAAGCCTCGCTAGTCAAAAGTGTACCAAGAAGATCA
AGTAGAGAGACTCTTATCAAGAATCCCATCTCTTGCTTGCTTTTTTTTGTTGCTTCCCTTTGATAGGGTTTGTTTTTCTTGTTTCAGTGACTTTCTATGT
TAAAAGATAATGTCAGTAAAAGGATTTGGTTTCTATTATTCTGAATCGATTACGGAAGATTCTTGCTTAATTCCAATCTATACAAGTATCGTGAAATAAT
GACCGTTTATGTGATTAGGAGACGTGTTTCATTAATAAAATATAAGATCAATACATTGTTAGTAGTGATAAACTATGTACAAATTGTATTGATTGTAAAA
GAAACACAATAGGTTCCTTTTTTCTACAATATATTGTGACAGACTCTCTGTTTTAACGAATGAATTAAATTTGTCAACGAAAAAATTAAAGAATGATGTG
A

Start of BLAST Alignment:	NT 995 / Exon 5 of 5
First 15 bp Perfect Match:	NT 999 / Exon 5 of 5

BLAST Details:
Query Sequence: 61713_AbB Border #2 
Length: (801 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At3g52590 68416.t05385 ubiquitin extension protein 1 (UBQ...  1246  1.1e-51   1
At3g52600 68416.t05387 beta-fructosidase, putative / beta...   685  2.4e-25   1
At4g33020 68417.t04331 metal transporter, putative (ZIP9)...   212  0.30      1
At5g27590 68418.t03004 hypothetical protein                    212  0.31      1


>At3g52590 68416.t05385 ubiquitin extension protein 1 (UBQ1) / 60S ribosomal
           protein L40 (RPL40B) identical to GI:166929, GI:166930
        Length = 1297

  Plus Strand HSPs:

 Score = 1246 (193.0 bits), Expect = 1.1e-51, P = 1.1e-51
 Identities = 258/270 (95%), Positives = 258/270 (95%), Strand = Plus / Plus

Query:   387 TACCAAGAAGATCAAGTAGAGAGACTCTTATCAAGAATCCCATCTCTTGCTTGCNNNNNN 446
             ||  ||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct:  1028 TAAGAAGAAGATCAAGTAGAGAGACTCTTATCAAGAATCCCATCTCTTGCTTGCTTTTTT 1087

Query:   447 NNGTTG-CTTCCCTTTGATAGGGTTTGTTTTTCTTGTTTCAGTGACTTTCTATGTTAAAA 505
               |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1088 TTGTTGTCTTCCCTTTGATAGGGTTTGTTTTTCTTGTTTCAGTGACTTTCTATGTTAAAA 1147

Query:   506 GATAATGTCAGTAAAAGGATTTGGTTT-CTATTATTCTGAATCGATTACGGAAGATTCTT 564
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct:  1148 GATAATGTCAGTAAAAGGATTTGGTTTTCTATTATTCTGAATCGATTACGGAAGATTCTT 1207

Query:   565 GCTTAATTCCAATCTATACAAGTATCGTGAAATAATGACCGTTTATGTGATTAGGAGACG 624
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1208 GCTTAATTCCAATCTATACAAGTATCGTGAAATAATGACCGTTTATGTGATTAGGAGACG 1267

Query:   625 TGTTTCATTAATAAAATATAAGATCAATAC 654
             ||||||||||||||||||||||||||||||
Sbjct:  1268 TGTTTCATTAATAAAATATAAGATCAATAC 1297


>At3g52600 68416.t05387 beta-fructosidase, putative / beta-fructofuranosidase,
           putative similar to beta-fructofuranosidase [Daucus carota] GI:18324
        Length = 2417

  Minus Strand HSPs:

 Score = 685 (108.8 bits), Expect = 2.4e-25, P = 2.4e-25
 Identities = 137/137 (100%), Positives = 137/137 (100%), Strand = Minus / Plus

Query:   801 TCACATCATTCTTTAATTTTTTCGTTGACAAATTTAATTCATTCGTTAAAACAGAGAGTC 742
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2281 TCACATCATTCTTTAATTTTTTCGTTGACAAATTTAATTCATTCGTTAAAACAGAGAGTC 2340

Query:   741 TGTCACAATATATTGTAGAAAAAAGGAACCTATTGTGTTTCTTTTACAATCAATACAATT 682
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2341 TGTCACAATATATTGTAGAAAAAAGGAACCTATTGTGTTTCTTTTACAATCAATACAATT 2400

Query:   681 TGTACATAGTTTATCAC 665
             |||||||||||||||||
Sbjct:  2401 TGTACATAGTTTATCAC 2417


>At4g33020 68417.t04331 metal transporter, putative (ZIP9) identical to
           putative metal transporter ZIP9 [Arabidopsis thaliana]
           gi|17385790|gb|AAL38435; similar to Zn and Cd transporter ZNT1
           [Thlaspi caerulescens] gi|7381054|gb|AAF61374; member of the Zinc
           (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
        Length = 1665

  Plus Strand HSPs:

 Score = 212 (37.9 bits), Expect = 0.36, P = 0.30
 Identities = 200/340 (58%), Positives = 200/340 (58%), Strand = Plus / Plus