At3g48500 SYNGENTA 62536
Genomic Sequence (from TAIR)
atcccaagttcatgtgtgttgtactttgattatgtacaatttaactacattgttagtaaggagtctatatagatgcctgtatcaaaacatctctcaatca tgtgtttattactttagcctaaacaagctttatgatctttaaccaacggtgttgatagtactggtcatgtaggggttcatccataactaaacgtctaaac cttatattaaaatgggtctaactgatcaatcaaaaacatttggggtcaaaacaatatattggataaatataagggttcatcaaaaaaaacttaacatttc ttcttcactgtaaaatgaaataaagcttatccatactcaacttcttcactctctcttaaaccttcaaaaaccctgaagagtgacgaatgaatcATGCAGA TTTGCCAAACCAAGCTCAATTTCACTTTCCCTAATCCCACAAACCCTAATTTCTGCAAACCCAAAGCTCTTCAATGGTCACCGCCTCGTCGCATATCCTT GCTGCCTTGTCGTGGATTCAGCTCCGATGAATTCCCAGTCGACGAAACCTTCCTCGAGAAATTCGGACCAAAGGACAAAGACACAGAAGATGAAGCTCGA CGACGTAACTGGATCGAACGTGGTTGGGCTCCATGGGAAGAGATTCTCACACCAGAAGCTGATTTCGCTCGTAAATCTCTCAACGAAGGTGAAGAAGTTC CGCTTCAATCGCCGGAAGCGATCGAAGCGTTTAAGATGCTGAGACCATCGTATAGGAAGAAGAAGATTAAGGAGATGGGGATAACAGAAGACGAATGGTA TGCAAAGCAATTTGAGATTAGAGGTGATAAACCACCTCCTTTAGAAACATCTTGGGCTGGTCCGATGGTTCTTAGGCAAATTCCGCCGCGTGATTGGCCT CCCAGAGGTTGGGAAGTTGATAGGAAGGAGCTGGAGTTTATTAGGGAAGCTCATAAGTTAATGGCTGAAAGAGTTTGGCTTGAGGATTTGGATAAGGATT TGAGAGTTGGTGAAGATGCTACTGTTGATAAGATGTGTTTGGAGAGGTTTAAGGTTTTCTTGAAACAATACAAGGAATGGGTTGAAGATAATAAAGATAG GTTGGAGGAAGAATCTTACAAGgttcgtttttttttttgaacaatgagatattgttagcttagtggtggctaagagaaggattctaataaagatgatgtt tttatttatacagCTCGATCAGGATTTTTATCCGGGTAGGAGGAAAAGAGGGAAGGATTACGAAGATGGGATGgtaaatattattatgctactggatttg attgtttgattagtttgctagatgatgaactgtttgtaagttaattgctttatttttctttgtgcagTATGAGCTTCCCTTTTACTATCCAGGGATGgta agaattcttattctaagccttgtatattgtaactaatgattggtttaaatgagcaatatcgtaatgtccatgcagGTTTGTGAAGGCACAGTTACCACTT TACATCTGTATCAGGGAGCGTTTGTTGACATTGGAGGTGTTCATGAAGGgtatgtttatgtctctttactttgtaaagatagacttaccgtggttcttgt atttagggtatataacgtaatataatgttgtctcttgtttcatatgctttttttgaaagatgtaagtttatgtgtctattggtttgcagATGGGTACCTA TAAAAGGTAATGACTGGTTTTGGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAAATCACGgtaatcttaaggcacatattcttctttcg catttataaaaatctgaatggaaattgcttcattctcctttttcttttgttctttcagGCAAAAAGAGATCCATACCGGTTTCGGTTTCCCTTGGAGTTG CGCTTCGTCCATCCTAACATAGATCACATGATgtatgtaattcacacgtatttaattctctttacatatccagtaaaaattggcattttggttctgtcct caatggtcttggt◄tatggt►ata►tgtgttgactgtttttacattcctgctccagATTTAATAAATTTGACTTCCCACCAATATTCCATCGTGATGGGG ATACTAATCCAGATGAGATACGGgtcagtagaatcctttcctagaatatcaatccatttcgtgttctcgtgaagagtctccctcttatctaatacattgt ttgtacagCGAGATTGTGGAAGACCTCCTGAACCTAGAAAAGATCCAGGATCAAAGCCAGAGGAGGAAGGGCTGCTCTCTGATCACCCTTATGTCGACAA Ggtattttcctgagcaaaagggttggttatgtgatttttgctttgtttactcattaggtttattggctttctaaattttgtgaaaccgtcaacacatttc tttcccgtttgcagTTGTGGCAGATACATGTAGCTGAGCAAATGATTTTGGGTGATTACGAAGCTAACCCTGCAAAATACGAAGGCAAAAAGCTATCAGA ATTATCTGATGATGAAGACTTTGATGAACAAAAGGATATCGAGTATGGCGAAGCTTATTATAAGAAAACCAAATTGCCAAAAGTGATTCTGgtgagagtt tcttctggtgtgttcgtgaaaccatactgtcttaagctttgtgattaaatgtgttctatttctggcagAAAACCAGTGTCAAGGAACTTGACTTAGAGGC TGCATTGACCGAGCGCCAGgtttaaattctcttccctacttgtcgtcaccaatttcctttaacccactgctacggaaatattctcgtttgtatttgttta tttttaatagatttccacttcacactgtcttggtaactccgattgtcgtcacagttccattttaaggctttgcactttgtaattgacacattgttgtatg aatcttttatactgatagtggttaataactcaatactctcctgttgtcttgtgcagCACCACAATAAACTAATGATGGAAGCTAAAGCAAGAGGAGAAGG ATACAAAATTGACAAGCTCAGACGAAATATAGAGATGGACGAGTATGATTTCTTACACTGGCGCCGATCTTTGGAGGAAAGAGAAGCATTGCTCAGAGAT ATCAGCTCgtaagtaaaaaaaagttcactttgatgtttttcaaagaaagtgtttagatgaagaagatttattttgcagTCGGCAAGCACTTGGTTTACCA TTGGAGGAACCAGGGAGGTACAAGCCAGGAAGCTTCTTTGGGAAAGACCAGTACGATCCAACAAGTGCATTATATCAGTATGACTACTGGGGAGAGCCAA AGAACTCAGAGATTAGCAAGCAAGAGAGAATGAAGGATGCACACAACAAATCCATTGTTGGGAAAGGCAATGTGTGGTATGACATGTCTTACGATGATGC GATTAAGCAGACAATAGAGAAAAGAAAAGAAGGGTCTACCTTGGCGAGTCAAGAAGAAGAAACAGAGTCAGAGGAAGAAGAAGAGGATGACGATGATTTT GACGATTTTGACTATAGCATTCTGAGTGATGAGAGCAGTATCGGTTACTCGGAACAGCAACCTCTTGTTAACGGTACTCAAGTCTTGACAGACTGAtgtt taaaaggaaagtaaaaataagaaattgtcgaggttgatttatttgaatttttgtctgttaggtttgatctatttgatagtttttttttttcatttcttct tatcccggagatagtaaaatcagtttcttattaacttagccagacgtttgggatcttgtagtacaccgttgaacgttaggaacgtgacgttttttgtttt ttctatcaatcgtcgtcagagaaggtagtcttgacaccgcaaaatacgcctaaatgtttctcttgtttcttctgtttgggctccaaaacatcaacttcta tcaaaaggctttctcgttcgtacctggaatatcaaaaacccttgtcatctctccgtgtataccaaaaacttcacaccatgtgtgctctttgatgacaaaa ctc
Border_1 (62536_LB1D)
GCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAAT
TCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTCAATTTGTCAATTTGTTTACACCAAGACCATTGAGGACAGAACC
AAAATGCCAATTTTTACTGGATATGTAAAGAGAATTAAATACGTGTGAATTACATACATCATGTGATCTATGTTAGGATGGACGAAGCGCAACTCCAAGG
GAAACCGAAACCGGTATGGATCTCTTTTTGCCTGAAAGAACAAAAGAAAAAGGAGAATGAAGCAATTTCCATTCAGATTTTTATAAATGCGAAAGAAGAA
TATGTGCCTTAAGATTACCGTGATTTCAACGATAACATGCATCCCAACTTTTATGAAATGCCGGATCCAAAACCAGTCATTACCTTTTATAGGTACCCAT
CTGCAAACCAATAGACACATAAACTTACATCTTTCAAAAAAAGCATATGAAACAAGAGACAACATTATATTACGTTATATACCCTAAATACAAGAACCAC
GGTAAGTCTATCTTTACAAAGTAAAGAGACATAAACATACCCTTCATGAACACCTCCAATGTCAACAAACGCTCCCTGATACAGATGT
| Start of BLAST Alignment: | NT 1620 / Intron 6 of 11 |
| First 15 bp Perfect Match: | NT 1620 / Intron 6 of 11 |
BLAST Details: Query Sequence: 62536_LB1D Length: (688 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g48500 68416.t04916 expressed protein 2560 2.0e-111 1 At3g11520 68416.t01258 cyclin, putative (CYC2) similar to... 228 0.047 1 At2g05250 68415.t00499 DNAJ heat shock N-terminal domain-... 182 0.9998 1 At1g69850 68414.t07361 nitrate transporter (NTL1) identic... 182 0.9998 1 >At3g48500 68416.t04916 expressed protein Length = 3242 Minus Strand HSPs: Score = 2560 (390.2 bits), Expect = 2.0e-111, P = 2.0e-111 Identities = 512/512 (100%), Positives = 512/512 (100%), Strand = Minus / Plus Query: 688 ACATCTGTATCAGGGAGCGTTTGTTGACATTGGAGGTGTTCATGAAGGGTATGTTTATGT 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1114 ACATCTGTATCAGGGAGCGTTTGTTGACATTGGAGGTGTTCATGAAGGGTATGTTTATGT 1173 Query: 628 CTCTTTACTTTGTAAAGATAGACTTACCGTGGTTCTTGTATTTAGGGTATATAACGTAAT 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1174 CTCTTTACTTTGTAAAGATAGACTTACCGTGGTTCTTGTATTTAGGGTATATAACGTAAT 1233 Query: 568 ATAATGTTGTCTCTTGTTTCATATGCTTTTTTTGAAAGATGTAAGTTTATGTGTCTATTG 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1234 ATAATGTTGTCTCTTGTTTCATATGCTTTTTTTGAAAGATGTAAGTTTATGTGTCTATTG 1293 Query: 508 GTTTGCAGATGGGTACCTATAAAAGGTAATGACTGGTTTTGGATCCGGCATTTCATAAAA 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1294 GTTTGCAGATGGGTACCTATAAAAGGTAATGACTGGTTTTGGATCCGGCATTTCATAAAA 1353 Query: 448 GTTGGGATGCATGTTATCGTTGAAATCACGGTAATCTTAAGGCACATATTCTTCTTTCGC 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1354 GTTGGGATGCATGTTATCGTTGAAATCACGGTAATCTTAAGGCACATATTCTTCTTTCGC 1413 Query: 388 ATTTATAAAAATCTGAATGGAAATTGCTTCATTCTCCTTTTTCTTTTGTTCTTTCAGGCA 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1414 ATTTATAAAAATCTGAATGGAAATTGCTTCATTCTCCTTTTTCTTTTGTTCTTTCAGGCA 1473 Query: 328 AAAAGAGATCCATACCGGTTTCGGTTTCCCTTGGAGTTGCGCTTCGTCCATCCTAACATA 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1474 AAAAGAGATCCATACCGGTTTCGGTTTCCCTTGGAGTTGCGCTTCGTCCATCCTAACATA 1533 Query: 268 GATCACATGATGTATGTAATTCACACGTATTTAATTCTCTTTACATATCCAGTAAAAATT 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1534 GATCACATGATGTATGTAATTCACACGTATTTAATTCTCTTTACATATCCAGTAAAAATT 1593 Query: 208 GGCATTTTGGTTCTGTCCTCAATGGTCTTGGT 177 |||||||||||||||||||||||||||||||| Sbjct: 1594 GGCATTTTGGTTCTGTCCTCAATGGTCTTGGT 1625 >At3g11520 68416.t01258 cyclin, putative (CYC2) similar to cyclin [Arabidopsis thaliana] GI:1360646; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain; identical to cDNA cyclin box (cyc2) partial cds GI:456019 Length = 1907 Minus Strand HSPs: Score = 228 (40.3 bits), Expect = 0.048, P = 0.047 Identities = 186/327 (56%), Positives = 186/327 (56%), Strand = Minus / Plus
Border_2 (62536_LB2U)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTGTTGACTGTTTTTACATTCCTGCTCCAGATTTAATAAATTTGA
CTTCCCACCAATATTCCATCGTGATGGGGATACCTAATCCAGATGAGATACGGGTCAGTAGAATCCTTTCCTAGAATATCAATCCATTTCGTGTTCTCGT
GAAGAGTCTCCCTCTTATCTAATACATTGTTTGTACAGCGAGATTGTGGAAGACCTCCTGAACCTAGAAAAGATCCAGGATCAAAGCCAGAGGAGGAAGG
GCTGCTCTCTGATCACCCTTATGTCGACAAGGTATTTTCCTGAGCAAAAGGGTTGGTTATGTGATTTTTGCTTTGTTTACTCATTAGGTTTATTGGCTTT
CTAAATTTTGTGAAACCGTCAACACATTTCTTTCCCGTTTGCAGTTGTGGCAGATACATGTAGTGA
| Start of BLAST Alignment: | NT 1627 / Intron 6 of 11 |
| First 15 bp Perfect Match: | NT 1630 / Intron 6 of 11 |
BLAST Details: Query Sequence: 62536_LB2U Length: (566 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g48500 68416.t04916 expressed protein 2041 5.5e-88 1 At3g47630 68416.t04814 expressed protein 191 0.86 1 At3g28340 68416.t03212 galactinol synthase, putative 178 0.9996 1 >At3g48500 68416.t04916 expressed protein Length = 3242 Plus Strand HSPs: Score = 2041 (312.3 bits), Expect = 5.5e-88, P = 5.5e-88 Identities = 413/416 (99%), Positives = 413/416 (99%), Strand = Plus / Plus Query: 152 ATGTGTGTTGACTGTTTTTACATTCCTGCTCCAGATTTAATAAATTTGACTTCCCACCAA 211 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1632 ATATGTGTTGACTGTTTTTACATTCCTGCTCCAGATTTAATAAATTTGACTTCCCACCAA 1691 Query: 212 TATTCCATCGTGATGGGGATACCTAATCCAGATGAGATACGGGTCAGTAGAATCCTTTCC 271 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1692 TATTCCATCGTGATGGGGATAC-TAATCCAGATGAGATACGGGTCAGTAGAATCCTTTCC 1750 Query: 272 TAGAATATCAATCCATTTCGTGTTCTCGTGAAGAGTCTCCCTCTTATCTAATACATTGTT 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1751 TAGAATATCAATCCATTTCGTGTTCTCGTGAAGAGTCTCCCTCTTATCTAATACATTGTT 1810 Query: 332 TGTACAGCGAGATTGTGGAAGACCTCCTGAACCTAGAAAAGATCCAGGATCAAAGCCAGA 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1811 TGTACAGCGAGATTGTGGAAGACCTCCTGAACCTAGAAAAGATCCAGGATCAAAGCCAGA 1870 Query: 392 GGAGGAAGGGCTGCTCTCTGATCACCCTTATGTCGACAAGGTATTTTCCTGAGCAAAAGG 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1871 GGAGGAAGGGCTGCTCTCTGATCACCCTTATGTCGACAAGGTATTTTCCTGAGCAAAAGG 1930 Query: 452 GTTGGTTATGTGATTTTTGCTTTGTTTACTCATTAGGTTTATTGGCTTTCTAAATTTTGT 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1931 GTTGGTTATGTGATTTTTGCTTTGTTTACTCATTAGGTTTATTGGCTTTCTAAATTTTGT 1990 Query: 512 GAAACCGTCAACACATTTCTTTCCCGTTTGCAGTTGTGGCAGATACATGTAG-TGA 566 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1991 GAAACCGTCAACACATTTCTTTCCCGTTTGCAGTTGTGGCAGATACATGTAGCTGA 2046 >At3g47630 68416.t04814 expressed protein Length = 2451 Minus Strand HSPs: Score = 191 (34.7 bits), Expect = 2.0, P = 0.86 Identities = 117/187 (62%), Positives = 117/187 (62%), Strand = Minus / Plus