At3g20400 SYNGENTA 64071
Genomic Sequence (from TAIR)
ggcgactctattggcgcatgcatgaacttgcgcccacagaagaatctaaatgttttataaaataaaataaaagcaagaaaattgaatggagaaattaatg cagttttgaaatatgaaaatgggaagggatgggataagcttgagattgaaatatatccaatttacattccactacgatctgaatgagttgtttattgcca tttacattctagtcattatagtggtagcagtaaacttccaatcttggattcttaatctagcaaaaagaagctcttcattaaccaatgtttatcaatgagt ttggatagactaatttttaccgcatttgtttgttagctcaactagatttatgtttcatataggctatgacacagacttgtatagtaagaagactagcata cattagaaATGGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTCTTCTTATCAGTGGATATGACACCACTCACTGG CAACGATTTTATGTTTTCGTTTATGGCTACAAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTTTAATCAAAGCAAAGACAGGAAGCACAAC ACAGCTTTCATCATTGGACAGGATGGATCCTTGAAAGAAGTGGATCTTGGAGAAGTTCGAAACAGAGATCTCAAACCACTTGTGTCCTCTTATGTTCCAA GTTCAATGCAACTTGAATAGtgcattttacaaaacccata◄atctatttcttgcacttttacttgtttctttttctcttttgtcatcttcttctttg►aa caatatatagaaatttaattcgtctctcatacttctttttg◄tttgccatatttgacttcgttttgttgcctttagttgtttaatttacttcttctgttg tagtagactcattgctaaatctctgtttctcttctaacatttgttatgtttgtgttcttgcaaataggcagctctgctgttgtaatttatgtagaacaga caacagagtaagctgcgtttaactttgaaatttgcaagtacgcatgcttagatttgagtttcccattttaacttttgtccttgtcagttttacaaagtgc aagtggctgctaggctgacacgtagaagattgaatgatttctcggagttaagttttgtcctttgatactccctggtcttaaagcatacttacagagtaac cgtagctgaatatcaacctcaagcaagtcatggaaccatacaccttccttcaatccaccagttttgggctggttagcgctctcctagatttatgtttcat ataagctaaccattaaaagtttaagagaagcttgtgtagtaagaagacaagctaaatgagttctcagtagccttaattcttcttctttttttgactaaat atgagcacttatagatgaagactagtaatgcattgattatgagaatactaaaaagttaagatgaataatcaaaaaaattatttggttagtattaaaatct tcaaatgaaacttagtcttaagatttgttgagatctttcatactatcgaagtcatgtagagtggaggtacgtagccaggcctaggagaagagaagagaag agaaggagaagcaagctaagaaactgaaagcctaaaaacttttgaatgttgatgattaaaaaagaatagatacatgctaacagcttatgcatttttgaaa tagtttttgttaactgtcgtgtagcttgtgtgtaaatatgtcgacgacaagtcaatgatgtcacacacactacacaaaacaaaacactgcttcaaactac cttcaacttcgagtccattactataagcaaaagtcccaaatcaaaacatcaattttcttgttcttgtcagctactcaaacctcaacatgttacatatatt ttttcagataaaacaaatcattctcatcgttcttatctgaccaggaataattcaatggaagtatgagtttgactcggtttccttttgatattagtcgtac ttttcaacattttacctagatagagccgtcctcttataattattcatcatttcatgcttctcatgttacatttctgcaatttttcaactctttgatttta tataatcatttgtttcctttcttaatcaaatccatctggctaacattatttagcttgatgcaattaaggtatattatctaatgaggtgatgcttccacgt ctttatattattataatccctcaacaattttaaaaaaagatcctgactttcaattttctctcttgtttcttcttttgatcatcttcaacaaaaaaaagtt acgatctttctctccgggtcatcggaatttgagctagcttagctaaagttccgatctttcctctctgggtcgtcggaatttgagctttttaaaatcATGG GAA
Border_1 (64071_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCCGCAATATGGGTTTTGTAAAATG
CACTATTCAAGTTGCATTGAACTTGGAACATAAGAGGACACAAGTGGTTTGAGATCTCTGTTTCGAACTTCTCCAAGATCCACTTCTTTCAAGGATCCAT
CCTGTCCAATGATGAAAGCTGTGTTGTGCTTCCTGTCTTTGCTTTGATTAAAAACCACAGCGATTTTCTTCTCTTCATCAATGAAGAAACTTGTAGCCAT
AAACGAAAACATAAAATCGTTGCCAGTGAGTGGTGTCATATCCACTGATAAGAAGACCTTGCTGCCCCACGACAACATGTTGGGCTCAATCTTAGTTGTA
ACCCAGATCTCCATTTCTAATGTATGCTAGTCTTCTTACTATACAAGTCTGTGTCATAGCCTATATGAAACATAAATCTAGTTGAGCTAACAAACAAATG
CGGTAAAAATTAGTCTATCCAAACTCATTGATAAACATTGGTTAATGAAGAGCTTCTTTTTGCTAGATTAAGAATCCAAGATTGGAAGTTTACTGCTACC
ACTATAATGACTAGAATGTAAATGGCAATAAACAACTCATTCAGATCGTAGTGGAATGTAAATTGGATATATTTCAATCTCAAGCTTATCCCATCCCTTC
CCATTTTCATATTTCAAAACTGCATTAATTTCTCCATTCAATTTTCTTGCTTTTATTTTATTTTATAAAACA
| Start of BLAST Alignment: | NT > 119 / Downstream |
| First 15 bp Perfect Match: | NT > 20 / Downstream |
BLAST Details: Query Sequence: 64071_LB2 Border #1 Length: (872 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N MQC12 60512 3462 3.3e-150 1 MLM24 60465 1181 3.6e-47 1 MWI23 60463 939 3.1e-36 1 MLD14 60483 848 4.0e-32 1 MQC12 60512 Length = 87,799 Minus Strand HSPs: Score = 3462 (525.5 bits), Expect = 3.3e-150, P = 3.3e-150 Identities = 740/792 (93%), Positives = 740/792 (93%), Strand = Minus / Plus Query: 872 TGTTTTATAAAATAAAATAAAAGCAAGAAAATTGAATGGAGAAATTAATGCAGTTTTGAA 813 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51010 TGTTTTATAAAATAAAATAAAAGCAAGAAAATTGAATGGAGAAATTAATGCAGTTTTGAA 51069 Query: 812 ATATGAAAATGGGAAGGGATGGGATAAGCTTGAGATTGAAATATATCCAATTTACATTCC 753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51070 ATATGAAAATGGGAAGGGATGGGATAAGCTTGAGATTGAAATATATCCAATTTACATTCC 51129 Query: 752 ACTACGATCTGAATGAGTTGTTTATTGCCATTTACATTCTAGTCATTATAGTGGTAGCAG 693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51130 ACTACGATCTGAATGAGTTGTTTATTGCCATTTACATTCTAGTCATTATAGTGGTAGCAG 51189 Query: 692 TAAACTTCCAATCTTGGATTCTTAATCTAGCAAAAAGAAGCTCTTCATTAACCAATGTTT 633 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51190 TAAACTTCCAATCTTGGATTCTTAATCTAGCAAAAAGAAGCTCTTCATTAACCAATGTTT 51249 Query: 632 ATCAATGAGTTTGGATAGACTAATTTTTACCGCATTTGTTTGTTAGCTCAACTAGATTTA 573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51250 ATCAATGAGTTTGGATAGACTAATTTTTACCGCATTTGTTTGTTAGCTCAACTAGATTTA 51309 Query: 572 TGTTTCATATAGGCTATGACACAGACTTGTATAGTAAGAAGACTAGCATACATTAGAAAT 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51310 TGTTTCATATAGGCTATGACACAGACTTGTATAGTAAGAAGACTAGCATACATTAGAAAT 51369 Query: 512 GGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTCTT 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51370 GGAGATCTGGGTTACAACTAAGATTGAGCCCAACATGTTGTCGTGGGGCAGCAAGGTCTT 51429 Query: 452 CTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTATGGCTAC 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51430 CTTATCAGTGGATATGACACCACTCACTGGCAACGATTTTATGTTTTCGTTTATGGCTAC 51489 Query: 392 AAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTTTAATCAAAGCAAAGACAG 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51490 AAGTTTCTTCATTGATGAAGAGAAGAAAATCGCTGTGGTTTTTAATCAAAGCAAAGACAG 51549 Query: 332 GAAGCACAACACAGCTTTCATCATTGGACAGGATGGATCCTTGAAAGAAGTGGATCTTGG 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51550 GAAGCACAACACAGCTTTCATCATTGGACAGGATGGATCCTTGAAAGAAGTGGATCTTGG 51609 Query: 272 AGAAGTTCGAAACAGAGATCTCAAACCACTTGTGTCCTCTTATGTTCCAAGTTCAATGCA 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51610 AGAAGTTCGAAACAGAGATCTCAAACCACTTGTGTCCTCTTATGTTCCAAGTTCAATGCA 51669 Query: 212 ACTTGAATAGTGCATTTTACAAAACCCATATTGCGGACGCTTAGACAACTTAATAACACA 153 |||||||||||||||||||||||||||||| | | ||| || ||| | Sbjct: 51670 ACTTGAATAGTGCATTTTACAAAACCCATAAT-CTATTTCTTGCACTT-TTACTTGTTTC 51727 Query: 152 TTGCGGACGTTTTTAATGTACTGAATT-AACGCCGAATTGAATTCGATTTGGTGTATCGA 94 || | ||| | || | || || ||| || ||| | | || || | || | Sbjct: 51728 TTTTTCTCTTTTGTCATCTTCTTCTTTGAACAATATATAGAAATTTAATTCGTCTCTC-A 51786 Query: 93 GA-TTGGTTATG 83 | || || || Sbjct: 51787 TACTTCTTTTTG 51798 MLM24 60465 Length = 87,487 Plus Strand HSPs: Score = 1181 (183.2 bits), Expect = 3.6e-47, P = 3.6e-47 Identities = 393/544 (72%), Positives = 393/544 (72%), Strand = Plus / Plus
Border_2 (64071_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCAATCTATTT
CTTGCACTTTTACTTGTTTCTTTTTCTCTTTTGTCATCTTCTTCTTTGAACAATATATAGAAATTTAATTCGTCTCTCATACTTCTTTTTGTTTGCCATA
TTTGACTTCGTTTTGTTGCCTTTAGTTGTTTAATTTACTTCTTCTGTTGTAGTAGACTCATTGCTAAATCTCTGTTTCTCTTCTAACATTTGTTATGTTT
GTGTTCTTGCAAATAGGCAGCTCTGCTGTTGTAATTTATGTAGAACAGACAACAGAGTAAGCTGCGTTTAACTTTGAAATTTGCAAGTACGCATGCTTAG
ATTTGAGTTTCCCATTTTAACTTTTGTCCTTGTCAGTTTTACAAAGTGCAAGTGGCTGCTAGGCTGACACGTAGAAGATTGAATGATTTCTCGGAGTTAA
GTTTTGTCCTTTGTC
| Start of BLAST Alignment: | NT > 76 / Downstream |
| First 15 bp Perfect Match: | NT > 76 / Downstream |
BLAST Details: Query Sequence: 64071_LB1 Length: (615 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N MQC12 60512 1825 2.8e-76 1 F23A5 51668 282 0.00018 1 F3O9 51361 267 0.0010 1 T14A11 60237 264 0.0015 1 MQC12 60512 Length = 87,799 Plus Strand HSPs: Score = 1825 (279.9 bits), Expect = 2.8e-76, P = 2.8e-76 Identities = 365/365 (100%), Positives = 365/365 (100%), Strand = Plus / Plus Query: 249 AACAATATATAGAAATTTAATTCGTCTCTCATACTTCTTTTTGTTTGCCATATTTGACTT 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51756 AACAATATATAGAAATTTAATTCGTCTCTCATACTTCTTTTTGTTTGCCATATTTGACTT 51815 Query: 309 CGTTTTGTTGCCTTTAGTTGTTTAATTTACTTCTTCTGTTGTAGTAGACTCATTGCTAAA 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51816 CGTTTTGTTGCCTTTAGTTGTTTAATTTACTTCTTCTGTTGTAGTAGACTCATTGCTAAA 51875 Query: 369 TCTCTGTTTCTCTTCTAACATTTGTTATGTTTGTGTTCTTGCAAATAGGCAGCTCTGCTG 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51876 TCTCTGTTTCTCTTCTAACATTTGTTATGTTTGTGTTCTTGCAAATAGGCAGCTCTGCTG 51935 Query: 429 TTGTAATTTATGTAGAACAGACAACAGAGTAAGCTGCGTTTAACTTTGAAATTTGCAAGT 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51936 TTGTAATTTATGTAGAACAGACAACAGAGTAAGCTGCGTTTAACTTTGAAATTTGCAAGT 51995 Query: 489 ACGCATGCTTAGATTTGAGTTTCCCATTTTAACTTTTGTCCTTGTCAGTTTTACAAAGTG 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51996 ACGCATGCTTAGATTTGAGTTTCCCATTTTAACTTTTGTCCTTGTCAGTTTTACAAAGTG 52055 Query: 549 CAAGTGGCTGCTAGGCTGACACGTAGAAGATTGAATGATTTCTCGGAGTTAAGTTTTGTC 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 52056 CAAGTGGCTGCTAGGCTGACACGTAGAAGATTGAATGATTTCTCGGAGTTAAGTTTTGTC 52115 Query: 609 CTTTG 613 ||||| Sbjct: 52116 CTTTG 52120 F23A5 51668 Length = 109,694 Minus Strand HSPs: Score = 282 (48.4 bits), Expect = 0.00018, P = 0.00018 Identities = 216/366 (59%), Positives = 216/366 (59%), Strand = Minus / Plus