At5g50280 SYNGENTA 648
Genomic Sequence (from TAIR)
agctgacgttgtcgtgtaggcgttcacccacctgtcagcttgcattcgactaaagtcagacatgttcaatagtgaacttgcattttgtttgttagtcttt gatattatatggtctttgcttatcgttttgtatcttcactctcttgacatctctctttattaggctaggatttgaggttaaactttcattttctttgaat ctttcactaactgggcttctctactgctacttacttatagatgggtttcaactttcaagttaaataccaaacctaattataactttaaagtttgtctcac gtcttttgctcttaaattgtgaattttgagcctttagcttcgctagaaagtggaagctgagccATGTCCATGGCGTCTTCTTCTCTTGCGACCCAATCCT TTTTTTCTTCCTTTCCTCTATCTCACCGACTTCACTTCCCTGTACCTTATCTTCTTCTTCGTTCTTCTTTCTTTCGAAAACCACTTAGTCTCTCTGCTAC TTCCCCTTCGTCATCTTCTTCTTCTCCTTCCATTTTCCTCTCCTGCTTCGATGACGCTTTGCCAGATAAGATCCAACAACCAGAAAATTCGACAATCAAT AGCGAAGAAAGTGAATGTGAAGAAGAAGATGATGAAGAAGGAGATGATTTCACAGACCCAATTCTTAAATTCTTCAAGTCACGAACTTTAACATCAGAAT CAACTGCAGACCCAGCTCGAGAATCCAAATTCTCCCTCCAGAAGAATCGTCGAACTTCCTGGCATTTAGCTCCAGACTTCGCTGACCCCGAAACTGAAAT CGAGTCTAAGCCTGAGGAATCCGTCTTTGTGACAAACCAACAAACACTTGGTGTGCATATTCCATTCGAAAGTGGCGTCGCTAGGGAAATCTTGGAACTT GCTAAGAATTTGAAAGAGAATCAAACTTTGGGAGAGATGTTATCA◄GGTTTCGAAAGAAGGGTT►AGTGATACAGAGTGTGTAG►AGGCATTAGTGATGA TGGGTGA◄ATCTGGTTTTGTGAAGAGTTGTCTATATTTCTATGAGTGGATGAGTTTACAAGAACCTTCCCTTGCTTCGCCTCGTGCTTGCTCTGTGTTGT TTACATTGCTCGGTAGAGAAAGAATGGCTGATTACATTCTGCTTCTGCTAAGTAATTTACCAGATAAGGAAGAGTTTAGAGATGTTCGTCTCTACAATGC CGCCATTTCTGGTCTCTCAGCTTCTCAAAGgtatcatctttttcctctttgcacgatgattcagttctaaagaatgaaaagttgtagtttttggtcaaat tgtgtagttggtgatcttttgttagGTATGATGATGCTTGGGAAGTGTATGAAGCTATGGATAAGATCAATGTGTATCCGGACAATGTTACATGTGCTAT ATTGATCACAACCTTGAGGAAAGCAGGACGAAGTGCGAAAGAAGTTTGGGAGATATTCGAGAAGATGAGTGAGAAAGGTGTGAAGTGGAGTCAGGATGTT TTCGGTGGCCTTGTGAAGTCGTTTTGTGATGAAGGGCTTAAAGAAGAAGCTCTTGTGATTCAAACAGAGATGGAGAAGAAAGGTATCCGTTCAAACACGA TTGTGTATAATACGTTGATGGATGCTTACAACAAATCCAACCACATAGAAGAAGTGGAAGGTCTTTTTACTGAAATGAGAGATAAAGGCTTGAAGCCTTC GGCTGCAACTTATAACATTCTTATGGATGCTTATGCTAGAAGGATGCAGCCTGATATCGTTGAGACACTTCTGCGGGAGATGGAGGATTTAGGTTTAGAG CCAAATGTGAAATCGTACACGTGTTTGATTAGTGCGTATGGGAGGACGAAGAAGATGAGTGATATGGCTGCTGATGCTTTCCTGCGGATGAAGAAAGTAG GTTTGAAACCTTCTTCACATTCTTACACAGCTCTTATTCATGCTTACTCGGTTAGCGGGTGGCACGAAAAAGCTTATGCTTCCTTTGAAGAGATGTGTAA GGAGGGGATTAAACCGTCGGTTGAAACATACACATCAGTTCTTGATGCATTCAGACGATCAGGCGACACTGGAAAGCTGATGGAAATTTGGAAACTAATG CTGAGAGAAAAAATCAAAGGGACACGGATAACATATAACACTCTTCTCGATGGGTTTGCCAAGCAAGGACTCTACATTGAAGCAAGGGATGTTGTATCTG AGTTTAGTAAAATGGGTTTGCAGCCGAGTGTCATGACTTACAATATGCTGATGAATGCATACGCACGGGGAGGACAAGATGCAAAACTGCCGCAACTGTT GAAGGAAATGGCTGCTCTTAACTTAAAACCTGATTCCATCACATATTCAACAATGATCTACGCGTTTGTTCGTGTTCGAGACTTCAAAAGGGCATTCTTT TACCACAAGATGATGGTTAAAAGCGGGCAAGTACCAGACCCAAGGTCCTATGAGAAACTTAGGGCGATTCTGGAAGACAAGGCAAAGACAAAGAACAGAA AGGATAAGACTGCCATACTTGGTATAATTAATAGCAAATTCGGTCGGGTTAAAGCTAAGACGAAGGGGAAGAAAGATGAGTTTTGGAAGTACAAGACGAA TCGAACTACTTCTCCTGGTCGTCACCGATCTTGAaggtagcctaaaagctatataaatgctttagtggtacatagtgaggattctcaagctatacgaatc tagttgtattcaatatatgttcctctgttctttgtacttatagccttatttattagcattctaattttttatgttcctaggacataccttggtcatgtgt agtaaaaagtgcaaaagtttagctttattattccgacaagcgaagtatctcttaagtagcaagcaatctttagatataactcttagctctctgcatcaaa gatcacacacatcactctcttgtaaacaacccaaataaagaaaATGAAAATCTTGATCTTGATTCTATCCTTTGTGACACTCTTTGAGATTTGCGTTGTG GACG
Border_1 (648_LB2D)
TTGGTAATTACTATTTCTTTTTCTCCATATTGACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACAATTSAATTGATAA
CATCTCTCCCAAAGTTTGATTCTCTTTCAAATTCTTAGCAAGTTCCAAGATTTCCCTAGCGACGCCACTTTCGAATGGAATATGCACACCAAGTGTTTGT
TGGTTTGTCACAAAGACGGATTCCTCAGGCTTAGACTCGATTTCAGTTTCGGGGTCAGCGAAGTCTGGAGCTAAATGCCAGGAAGTTCGACGATTCTTCT
GGAGGGAGAATTTGGATTCTCGAGCTGGGTCTGCAGTTGATTCTGATGTTAAAGTTCGTGACTTGAAGAATTTAAGAATTGGGTCTGTGAAATCATCTCC
TTCTTCATCATCTTCTTCTTCACATTCACTTTCTTCGCTATTGATTGTCGAATTTTCTGGTTGTTGGATCTTATCTGGCAAAGCGNCATCGAAGCAGGAG
AGGAAAATGGAAGGAGAAGAAGAAGATGACGAAGGGGAAGTAGCAGAGAGACTAAGTGGTTTTCGAAAGAAAGAAGAACGAAGAAGAAGATAAGGTACAG
GGAAGTGAAGTCGGTGAGATAGAGGAAAGGAAGAAAAAAAGGATTGGGTCGCAAGAGAAGAAGACGCCATGGACATGGCTCAGCTTCCACTTTCTAGCGA
AGCTAAAGGCTCAAAATTCACAATTTAAGAGCAAAAGACGTGAGACAAACTTTAAAGTTATAATTAGGTTTGGTATTTAACTTGAAAGTTGAAACCCATC
TATAAGTAAGTAGCAGTAGAGAAGCCCAGTTAGTGAAAGATTCAAAGAAAATGAAAGTTTAACCTCAAATCCTAGCCTAATAAAGAGAGATGTCAAGAGA
GTGAAGATACAAAACGATAAGCAAAGACCATATAATATCAAAGACTAACAAACAAAATGCAAGTTCACTATTGAACGCCTACACGACAACGTCAGCTCCT
AAATCATCTCATATTTTTTGTCGGGATTAACGGATTCGGGGGAGATAACGAACTTTTTTAAACAGCTTCCGTTTCTCAAGATAAACTCTACCAGTTGTCT
CTCTGCTTCTGTTCCTTCATAGTCAACCCATTCAACGGTTTCAAGACTCGATAAAACACATTCAGGAACTGAACTCAGATCATCCCGTAAAGGGCTTGGT
GAACAAATCAAATGGCCATGGTGCTGAGATAAACGGTACATAAGACACTGAATGAATTGGAAAATAACCTGATCAAAGACACTGATCTAATAATTGGGAT
GGGAATATTAATATGTACCTTTTCAAGTTTGAGAGAATTAGTTTAGGGGGAACCTTTGAGAAGACACGCAAGTAGATTCAACCACTCATCGTCACAAGTG
CATAGCGTGATATGTACAAGACGGTGGAAGACACATCTAATAGGATACATATCCTGCATACAAGACAGAATACTGAATAAACAATGTTAGTGCGGTAAAT
GATAGAAACAAAGTAAAGTTAAACAGATTATTATTTACCTGTGTGGTAATAAACATAAATAGAGACGCTTGACTGAAGTAATAGAACTCAGGAACTTCAC
TGGATGATGGTGAAGAACACTAACATATGCCTCAGCAAGATTAGGCATTCCATTCTCAATGACACAAAACCCACCCGTTTGATCAATGTCCAAGTATTCC
AAAGAAGGGGCCTCTACCACAAACCCACTTTCCCCATCTGGAGCTCTCTCTTTTGATGTACGCAAGACTAAACTCTTTAGAGAAGGAACTTTAACGGAGA
AGATAGTCACATTATCATTTATACATTGTTCCACAACCAAGTCTTCAAGAACATGACAACTTGATAAAAGACTCTTGACAAATTCATTACCAGGGTACTT
CACAGATACAAGGCTCAAATTTTTGAGGGATGGAAAACACGTCGGTGAAGAAACATCTACAAGAACCGCTTTTTTTAGTTTCAGCGTCACAAGCATTCTA
CACTCTGTGTACAAACTCCTTGGAAGTATGGATGGAGATGCACTAGTAGAGCAGTTGATTTCGATGATCAGCTCACGAAAACAAAATTTACTAGCAGCTC
TAATCCACCATTGAATATCTCCATTACCACAGTTTTGACCTAGTTTGAAATGCAAAGTTTCTATACCTGGAGCCTTTCGCATAAACAAAGATCTGTCAAC
AAACCGTGAAAACTTTCCATACTCGAGATTCTGATAGCTATCATCATAAACAAGTTTTGGCACCATCATCCAAAGAAACTGCCATCGTTTAGACAAAACC
ATTGTGACAACAACATCTTTCACATTAGGTAGTAACGACAATACTCTCAAGAGTAGCTCATCAGGCAGCCCACTTATCCTATCCATAAGAGATTTATACT
AAGCCTGAAACATCAAAAAATCGAACCAAACAAATAAGGCATAGCAACAGCGAAAGGTAAGCAAAACCATAGTGAGATATAGAACCCATAAAATAGAAAT
GGACGAAAACGAAATCCAACTCATCTTTAACCAAGAAAGAATATTCTTAAAGTAACTACTTCGGAATCAAACAAGTGAGACTGATAATCTTACAAATTCA
AAGAATGGGGCAAAGACCTGAAACCCTTCTCGTCCAACGGAGAAAAAGAACATATTATTTGTTACTGCCACAAAATCCTCTTTAAATAATTGATGTGAGC
GGTGCAATTTTCCAAAATTCTTTGATCGTTTCAACTTCCACTGAGAGAATCAAATGACTCTTCATTACGCTTCTTTTACCCAAAAAAAAGAAGAAGCTAA
TTAACTCGTTTGAAGTCGCATTGGTTAGTATTGGAAATATACTACATAAAACCATTTATTTATTCATTTAACGAATTCAAACGATTCCCATCAACTTCAT
ACATTGAAAACCATAACCTATTAATGAAAAAGAAATATATTTAAAAAAAAAACAATCATCATAAACAAACTTGTCAATGTCTATTTAATCTTAATATAAA
GAGATTTAATTTAGAGTTCATCCTTAAGCGAGTCCAAGGAAAGTCTAGAAGGGTTAGTGTTGGAGTTCTTGAGAGGATAAGAAGCTTCCATTGCAATACC
ACAAAGTCCTTCTTTATGACGAATCCCTCTCTGCATTCTTATGTATCCTTTCTCTCCCCATTCCTCTCCCCATGAATTCTTAACAATCCAATACTTTGTT
CCGTCTATCGTTGTTCCATACCCTACTACCGCAACTCCATGGTTTAGCTCTGTTCCGCATCTCCCGGTAAACACTCCCTATGACACCATTGCATGCGTTA
AGACAAAAAATGTTTTTAATAAGTTCTTGAACTTAATTAGTATATGTGTTGTGAGTTCTTACCTCGGAGTAGAATTGAAAGTCTGAGCCTCCAGCATCAA
TAGCAACAGAAACAGGCTGATTAGCAACAGCTTTCATTAGATCATCCTCGCTGTTCTTAGGAACATCTTCGTGTCCATCGATTGAAACTACCGGAGCATT
TTCTTTGTTTGTGTCACAAGTTTCATCAGAAGCCTTGTAAGGGTACACTAGCTCACTTGTGAGTCCTCCTTTCTCCTTGATGAACTCAAAAGCAAGGTCC
ATTAGACCTCCATTGCATCCTTGGTTCTGGTTTGTATCACAATCTACTAGCTCTTGCTCTGAGAGTGATGTCAGCTTTTTAGTTCTTATTTGGTTGATCC
CTTCCACCGCAACAACTGTTGAAAACGCCCAACAACTCCCTGTAATAACCACAAACCAAATCTGTGTTAATTCTCATTTTCCATATATCTTTTAGATTGA
AGGATCAATGAAAAGAAGAGTTTTACCGCATTGGCCTTGGTTTTTGACAGGAGTGACGGCTCCATTCTTTCTCCAATCAACGGAGGTTGGGAGAGTATTT
ACATTTGCATACATGAAGCTCTTTGTGGCCTTTTTTTCGCCTTAAAACATCCTATGATGTTTGATGTTTGAACCAGCGTATGTTCTCCTAAATTCTTCAC
TAGTCATGTCACCCAAACTTGTTTAGCTTGAGCTTGTAAGATTTATCCTTCTTGTTGGTCTCATGAATGTGCTTCACGTTGTGCTTGAACACGTTGAACC
TCTTAGCTTTCTCTTCAAGGCTCCTAGCAACAGTGTGGTGACTCCTCCACCGTTCGTATAGCTCCCACAAGCTATTCTCTGATTCCACATCTTTGTTATG
GAAATCTAAACCCTTTGTGGTTTCAAGAACCATAAGCATGCAAAGCGCAAGAACAATAAATCGCTTCATATTTTTCTATGGTGATTTTTGTATTTACTTG
TGATTGTGATTGAGTTTGTTGATGGTAATCAGGACTAAAGAGAAAGTGTTTATATAGGGATTATAGATACATTGGTGAGAGGTTATTGTGATGACGATAT
GTAATGAAAAGTACCAAAAGGGGTTAAAGGATTACTTGTGGGATTCAACAAAGATTTCAAGGTTAGTGGCATGGATACATTAATTAATGGAGATTCATAA
AGATTTCAAACTATAATTGAACTTTATGTTGATTTAATGGCGCAAGCAAGCTCTCTCATTTTACTTTTCTTATTCTTGGTAACAATAATTGATGATTTTG
GGAAATAGTCGGCGATGAGATGACTTAATATATATAAGTGTAAAATGACATTTTTATATGAAGCACGTATAGTGATAATTAATCAAAGCACANGTTGTAC
GCAACAATTTATCTTTACTAGCTAGGAACTCTGTTATTCATGTAACCTCACTATGATTAATTATGTGGATTATGTATTTTTTTCTTTTACAAATATGGAT
CCGTCGACCTG
| Start of BLAST Alignment: | NT 641 / Exon 1 of 2 |
| First 15 bp Perfect Match: | NT 582 / Exon 1 of 2 |
BLAST Details: Query Sequence: 648_LB2D Length: (4811 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g50260 68418.t05780 cysteine proteinase, putative simi... 8458 0. 1 At5g50270 68418.t05781 F-box family protein contains F-bo... 6882 2.8e-306 1 At1g32375 68414.t03588 F-box family protein contains F-bo... 3257 1.5e-142 1 At5g50280 68418.t05782 pentatricopeptide (PPR) repeat-con... 2917 2.1e-127 1 >At5g50280 68418.t05782 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 2267 Minus Strand HSPs: Score = 2917 (443.7 bits), Expect = 2.1e-127, P = 2.1e-127 Identities = 613/643 (95%), Positives = 613/643 (95%), Strand = Minus / Plus Query: 676 ATGTCCATGGCGTCTTCTTCTCTTGCGACCCAATCCTTTTTTTCTTCCTTTCCTCTATCT 617 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ATGTCCATGGCGTCTTCTTCTCTTGCGACCCAATCCTTTTTTTCTTCCTTTCCTCTATCT 60 Query: 616 CACCGACTTCACTTCCCTGTACCTTATCTTCTTCTTCGTTCTTCTTTCTTTCGAAAACCA 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 CACCGACTTCACTTCCCTGTACCTTATCTTCTTCTTCGTTCTTCTTTCTTTCGAAAACCA 120 Query: 556 CTTAGTCTCTCTGCTACTTCCCCTTCGTCATCTTCTTCTTCTCCTTCCATTTTCCTCTCC 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 CTTAGTCTCTCTGCTACTTCCCCTTCGTCATCTTCTTCTTCTCCTTCCATTTTCCTCTCC 180 Query: 496 TGCTTCGATGNCGCTTTGCCAGATAAGATCCAACAACCAGAAAATTCGACAATCAATAGC 437 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 TGCTTCGATGACGCTTTGCCAGATAAGATCCAACAACCAGAAAATTCGACAATCAATAGC 240 Query: 436 GAAGAAAGTGAATGTGAAGAAGAAGATGATGAAGAAGGAGATGATTTCACAGACCCAATT 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 GAAGAAAGTGAATGTGAAGAAGAAGATGATGAAGAAGGAGATGATTTCACAGACCCAATT 300 Query: 376 CTTAAATTCTTCAAGTCACGAACTTTAACATCAGAATCAACTGCAGACCCAGCTCGAGAA 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 CTTAAATTCTTCAAGTCACGAACTTTAACATCAGAATCAACTGCAGACCCAGCTCGAGAA 360 Query: 316 TCCAAATTCTCCCTCCAGAAGAATCGTCGAACTTCCTGGCATTTAGCTCCAGACTTCGCT 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 TCCAAATTCTCCCTCCAGAAGAATCGTCGAACTTCCTGGCATTTAGCTCCAGACTTCGCT 420 Query: 256 GACCCCGAAACTGAAATCGAGTCTAAGCCTGAGGAATCCGTCTTTGTGACAAACCAACAA 197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 GACCCCGAAACTGAAATCGAGTCTAAGCCTGAGGAATCCGTCTTTGTGACAAACCAACAA 480 Query: 196 ACACTTGGTGTGCATATTCCATTCGAAAGTGGCGTCGCTAGGGAAATCTTGGAACTTGCT 137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ACACTTGGTGTGCATATTCCATTCGAAAGTGGCGTCGCTAGGGAAATCTTGGAACTTGCT 540 Query: 136 AAGAATTTGAAAGAGAATCAAACTTTGGGAGAGATGTTATCAATTSAATTGTAA-ATGGC 78 |||||||||||||||||||||||||||||||||||||||||| | | | || | || Sbjct: 541 AAGAATTTGAAAGAGAATCAAACTTTGGGAGAGATGTTATCAGGTT--TCGAAAGAAGGG 598 Query: 77 TTCATG-TCCGGGAAATCTACATGGATCAGCAATGA-GTATGA 37 || || | | | | || | | || || |||| | ||| Sbjct: 599 TTAGTGATACAGAGTGTGTAGAGGCATTAGTGATGATGGGTGA 641 >At1g32375 68414.t03588 F-box family protein contains F-box domain Pfam:PF00646 Length = 1450 Minus Strand HSPs: Score = 3257 (494.7 bits), Expect = 1.5e-142, P = 1.5e-142 Identities = 1037/1444 (71%), Positives = 1037/1444 (71%), Strand = Minus / Plus
Border_2 (648_LB1U)
GGTAATTACTCTTTCTTTTTCTCCATATTGACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATACTTTG
AAGGCATTAGTGATGATGGGTGAATCTGGTTTTGTGAAGAGTTGTCTATATTTCTATGAGTGGATGAGTTTACAAGAACCTTCCCTTGCTTCGCCTCGTG
CTTGCTCTGTGTTGTTTACATTGCTCGGTAGAGAAAGAATGGCTGATTACATTCTGCTTCTGCTAAGTAATTTACCAGATAAGGAAGAGTTTAGAGATGT
TCGTCTCTACAATGCCGCCATTTCTGGTCTCTCAGCTTCTCAAAGGTATCATCTTTTTCCTCTTTGCCGATGATTCAGTTCTAAAGAATGAAAAGTTGTA
GTTTTTGGTCAAATTGTGTAGTTGGTGATCTTTTGTTAGGTATGATGATGCTTGGGAAGTGTATGAAGCTATGGATAAGATCAATGTGTATCCGGACAAT
GTTACATGTGCTATATTGATCACAACCTTGAGGAAAGCAGGACGAAGTGCGAAAGAAGTTTGGGAGATATTCGAGAAGATGAGTGAGAAAGGTGTGAAGT
GGAGTCAGGATGTTTTCGGTGGCCTTGTGAAGTCGTTTTGTGATGAAGGGCTTAAAGAAGAAGCTCTTGTGATTCAAACAGAGATGGAGAAGAAAGGTAT
CCGTTCAAACACGATTGTGTATAATACGTTGATGGATGCTTACAACAAATCCAACCACATAGAAGAAGTGGAAGGTCTTTTTACTGAAATGAGAGATAAA
GGCTTGAAGCCTTCGGCTGCAACTTATAACATTCTTATGGATGCTTATGCTAGAAGGATGCAGCCTGATATCGTTGAGACACTTCTGCGGGAGATGGAGG
ATTTAGGTTTAGAGCCAAATGTGAAATCGTACACGTGTTTGATTAGTGCGTATTGGGAGGACGAAGAAGATGAGTGATATGGCTGCTGATGCTTTCCTGC
GGATGAAGAAAGTAGGTTTGAAACCTTCTTCACATTCTTACACAGCTCTTATTCATGCTTACTCGGTTAGCGGGTGGCACGAAAAAGCTTATGCTTCCTT
TGAAGAGATGTGTAAGGAGGGGATTAAACCGTCGGTTGAAACATACACATCAGTTCTTGATGCATTCAGACGATCAGGCGACACTGGAAAGCTGATGGAA
ATTTGGAAACTAATGCTGAGAGAAAAAATCAAAGGGACACGGATAACATATAACACTCTTCTCGATGGGTTTGCCAAGCAAGGACTCTACATTGAAGCAA
GGGATGTTGTATCTGAGTTTAGTAAAATGGGTTTGCAGCCGAGTGTCATGACTTACAATATGCTGATGAATGCATACGCACGGGGAGGNCAAGATGCAAA
ACTGCCGCAACTGTTGAAGGAAATGGCTGCTCTTAACTTAAAACCTGATTCCATCACATATTCAACAATGATCTACGCGTTTGTTCGTGTTCGAGACTTC
AAAAGGGCATTCTTTTACCACAAGATGATGGTTAAAAGCGGGCAAGTACCAGACCCAAGGTCCTATGAGAAACTTAGGGCGATTCTGGAAGACAAGGCAA
AGACAAAGAACAGAAAGGATAAGACTGCCATACTTGGTATAATTAATAGCAAATTCGGTCGGGTTAAAGCTAAGACGAAGGGGAAGAAAGATGAGTTTTG
GAAGTACAAGACGAATCGAACTACTTCTCCTGGTCGTCACCGATCTTGAAGGTAGCCTAAAAGCTATATAAATGCTTTAGTGGTACATAGTGAGGATTCT
CAAGCTATACGAATCTAGTTGTATTCAATATATGTTCCTCTGTTCTTTGTACTTATAGCCTTATTTATTAGCATTCTAATTTTTTATGTTCCTAGGACAT
ACCTTGGTCATGTGTAGTAAAAAGTGCAAAAGTTTAGCTTTATTATTCCGACAAGCGAAGTATCTCTTAAGTAGCAAGCAATCTTTAGATATAACTCTTA
GCTCTCTGCATCAAAGATCACACACATCACTCTCTTGTAAACAACCCAAATAAAGAAAATGAAAATCTTGATCTTGATTCTATCCTTTGTGACACTCTTT
GAGATTTGCGTTGTGGACGCATGTCGATCATACTGTGGAAACATAACCGTTGATTATCCGTTTGGGATCCGTCGACCTGCAGCCAAGCTTGGCGTAATCA
TGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAG
TGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGYCAACGCGCGGGGAG
AGGC
| Start of BLAST Alignment: | NT 600 / Exon 1 of 2 |
| First 15 bp Perfect Match: | NT 619 / Exon 1 of 2 |
BLAST Details: Query Sequence: 648_LB1U Length: (2404 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g50280 68418.t05782 pentatricopeptide (PPR) repeat-con... 8213 0. 1 At5g50290 68418.t05783 hypothetical protein 565 9.3e-17 1 At4g11690 68417.t01776 pentatricopeptide (PPR) repeat-con... 543 8.0e-16 1 At5g55840 68418.t06458 pentatricopeptide (PPR) repeat-con... 488 4.6e-13 1 >At5g50280 68418.t05782 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 2267 Plus Strand HSPs: Score = 8213 (1238.3 bits), Expect = 0., P = 0. Identities = 1657/1668 (99%), Positives = 1657/1668 (99%), Strand = Plus / Plus Query: 86 ATTGA-ATATACTTTG-A-AGGCATTAGTGATGATGGGTGAATCTGGTTTTGTGAAGAGT 142 | ||| | | | | || | ||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 AGTGATACAGAGTGTGTAGAGGCATTAGTGATGATGGGTGAATCTGGTTTTGTGAAGAGT 660 Query: 143 TGTCTATATTTCTATGAGTGGATGAGTTTACAAGAACCTTCCCTTGCTTCGCCTCGTGCT 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 TGTCTATATTTCTATGAGTGGATGAGTTTACAAGAACCTTCCCTTGCTTCGCCTCGTGCT 720 Query: 203 TGCTCTGTGTTGTTTACATTGCTCGGTAGAGAAAGAATGGCTGATTACATTCTGCTTCTG 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 TGCTCTGTGTTGTTTACATTGCTCGGTAGAGAAAGAATGGCTGATTACATTCTGCTTCTG 780 Query: 263 CTAAGTAATTTACCAGATAAGGAAGAGTTTAGAGATGTTCGTCTCTACAATGCCGCCATT 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 CTAAGTAATTTACCAGATAAGGAAGAGTTTAGAGATGTTCGTCTCTACAATGCCGCCATT 840 Query: 323 TCTGGTCTCTCAGCTTCTCAAAGGTATCATCTTTTTCCTCTTTGC-CGATGATTCAGTTC 381 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 841 TCTGGTCTCTCAGCTTCTCAAAGGTATCATCTTTTTCCTCTTTGCACGATGATTCAGTTC 900 Query: 382 TAAAGAATGAAAAGTTGTAGTTTTTGGTCAAATTGTGTAGTTGGTGATCTTTTGTTAGGT 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 TAAAGAATGAAAAGTTGTAGTTTTTGGTCAAATTGTGTAGTTGGTGATCTTTTGTTAGGT 960 Query: 442 ATGATGATGCTTGGGAAGTGTATGAAGCTATGGATAAGATCAATGTGTATCCGGACAATG 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 ATGATGATGCTTGGGAAGTGTATGAAGCTATGGATAAGATCAATGTGTATCCGGACAATG 1020 Query: 502 TTACATGTGCTATATTGATCACAACCTTGAGGAAAGCAGGACGAAGTGCGAAAGAAGTTT 561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1021 TTACATGTGCTATATTGATCACAACCTTGAGGAAAGCAGGACGAAGTGCGAAAGAAGTTT 1080 Query: 562 GGGAGATATTCGAGAAGATGAGTGAGAAAGGTGTGAAGTGGAGTCAGGATGTTTTCGGTG 621 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1081 GGGAGATATTCGAGAAGATGAGTGAGAAAGGTGTGAAGTGGAGTCAGGATGTTTTCGGTG 1140 Query: 622 GCCTTGTGAAGTCGTTTTGTGATGAAGGGCTTAAAGAAGAAGCTCTTGTGATTCAAACAG 681 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 GCCTTGTGAAGTCGTTTTGTGATGAAGGGCTTAAAGAAGAAGCTCTTGTGATTCAAACAG 1200 Query: 682 AGATGGAGAAGAAAGGTATCCGTTCAAACACGATTGTGTATAATACGTTGATGGATGCTT 741 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1201 AGATGGAGAAGAAAGGTATCCGTTCAAACACGATTGTGTATAATACGTTGATGGATGCTT 1260 Query: 742 ACAACAAATCCAACCACATAGAAGAAGTGGAAGGTCTTTTTACTGAAATGAGAGATAAAG 801 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1261 ACAACAAATCCAACCACATAGAAGAAGTGGAAGGTCTTTTTACTGAAATGAGAGATAAAG 1320 Query: 802 GCTTGAAGCCTTCGGCTGCAACTTATAACATTCTTATGGATGCTTATGCTAGAAGGATGC 861 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1321 GCTTGAAGCCTTCGGCTGCAACTTATAACATTCTTATGGATGCTTATGCTAGAAGGATGC 1380 Query: 862 AGCCTGATATCGTTGAGACACTTCTGCGGGAGATGGAGGATTTAGGTTTAGAGCCAAATG 921 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1381 AGCCTGATATCGTTGAGACACTTCTGCGGGAGATGGAGGATTTAGGTTTAGAGCCAAATG 1440 Query: 922 TGAAATCGTACACGTGTTTGATTAGTGCGTATTGGGAGGACGAAGAAGATGAGTGATATG 981 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1441 TGAAATCGTACACGTGTTTGATTAGTGCGTAT-GGGAGGACGAAGAAGATGAGTGATATG 1499 Query: 982 GCTGCTGATGCTTTCCTGCGGATGAAGAAAGTAGGTTTGAAACCTTCTTCACATTCTTAC 1041 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1500 GCTGCTGATGCTTTCCTGCGGATGAAGAAAGTAGGTTTGAAACCTTCTTCACATTCTTAC 1559 Query: 1042 ACAGCTCTTATTCATGCTTACTCGGTTAGCGGGTGGCACGAAAAAGCTTATGCTTCCTTT 1101 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1560 ACAGCTCTTATTCATGCTTACTCGGTTAGCGGGTGGCACGAAAAAGCTTATGCTTCCTTT 1619 Query: 1102 GAAGAGATGTGTAAGGAGGGGATTAAACCGTCGGTTGAAACATACACATCAGTTCTTGAT 1161 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1620 GAAGAGATGTGTAAGGAGGGGATTAAACCGTCGGTTGAAACATACACATCAGTTCTTGAT 1679 Query: 1162 GCATTCAGACGATCAGGCGACACTGGAAAGCTGATGGAAATTTGGAAACTAATGCTGAGA 1221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1680 GCATTCAGACGATCAGGCGACACTGGAAAGCTGATGGAAATTTGGAAACTAATGCTGAGA 1739 Query: 1222 GAAAAAATCAAAGGGACACGGATAACATATAACACTCTTCTCGATGGGTTTGCCAAGCAA 1281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1740 GAAAAAATCAAAGGGACACGGATAACATATAACACTCTTCTCGATGGGTTTGCCAAGCAA 1799 Query: 1282 GGACTCTACATTGAAGCAAGGGATGTTGTATCTGAGTTTAGTAAAATGGGTTTGCAGCCG 1341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1800 GGACTCTACATTGAAGCAAGGGATGTTGTATCTGAGTTTAGTAAAATGGGTTTGCAGCCG 1859 Query: 1342 AGTGTCATGACTTACAATATGCTGATGAATGCATACGCACGGGGAGGNCAAGATGCAAAA 1401 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1860 AGTGTCATGACTTACAATATGCTGATGAATGCATACGCACGGGGAGGACAAGATGCAAAA 1919 Query: 1402 CTGCCGCAACTGTTGAAGGAAATGGCTGCTCTTAACTTAAAACCTGATTCCATCACATAT 1461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1920 CTGCCGCAACTGTTGAAGGAAATGGCTGCTCTTAACTTAAAACCTGATTCCATCACATAT 1979 Query: 1462 TCAACAATGATCTACGCGTTTGTTCGTGTTCGAGACTTCAAAAGGGCATTCTTTTACCAC 1521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1980 TCAACAATGATCTACGCGTTTGTTCGTGTTCGAGACTTCAAAAGGGCATTCTTTTACCAC 2039 Query: 1522 AAGATGATGGTTAAAAGCGGGCAAGTACCAGACCCAAGGTCCTATGAGAAACTTAGGGCG 1581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2040 AAGATGATGGTTAAAAGCGGGCAAGTACCAGACCCAAGGTCCTATGAGAAACTTAGGGCG 2099 Query: 1582 ATTCTGGAAGACAAGGCAAAGACAAAGAACAGAAAGGATAAGACTGCCATACTTGGTATA 1641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2100 ATTCTGGAAGACAAGGCAAAGACAAAGAACAGAAAGGATAAGACTGCCATACTTGGTATA 2159 Query: 1642 ATTAATAGCAAATTCGGTCGGGTTAAAGCTAAGACGAAGGGGAAGAAAGATGAGTTTTGG 1701 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2160 ATTAATAGCAAATTCGGTCGGGTTAAAGCTAAGACGAAGGGGAAGAAAGATGAGTTTTGG 2219 Query: 1702 AAGTACAAGACGAATCGAACTACTTCTCCTGGTCGTCACCGATCTTGA 1749 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2220 AAGTACAAGACGAATCGAACTACTTCTCCTGGTCGTCACCGATCTTGA 2267 >At4g11690 68417.t01776 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 1701 Plus Strand HSPs: Score = 543 (87.5 bits), Expect = 8.0e-16, P = 8.0e-16 Identities = 619/1100 (56%), Positives = 619/1100 (56%), Strand = Plus / Plus