At3g54660 SYNGENTA 64947
Genomic Sequence (from TAIR)
acatacgttgataacacaaatcgtataactttctaacggtacagaaaatagtaaaccgtacaaaaataataaaaaagggtaagatgtagaagtataaaac taatagtacaaattaaaagattttggttccacttgtatgtataagtgattacatcaaaatggtattactaagtcatcatttagatttgatgaagtttgta ttcgtgtcataaaccgggcgtaggtggagttattgtcagtttggtagcgttttacgaccacacataaaaacatgtttataaattgttaaaaaacaataag acatgtcataaatctaaatgccacaagtagaattatcgaaataaagcttttacataaatacacacacccaaactaaaaaagaaaaaaaaaagaaagagag agagagaagaagaatcgtggagATGGCTTCGACCCCGAAGCTTACCAGTACAATTTCATCATCTTCTCCATCTCTTCAATTCCTCTGCAAAAAACTCCCA ATCGCAATTCATCTACCATCATCTTCTTCCTCTAGCTTTCTCTCGCTTCCTAAAACCCTAACCTCTCTCTATTCTCTCCGTCCCCGTATCGCCCTACTCT CAAACCACCGCTATTACCACTCTCGCCGGTTTTCTGTTTGTGCCAGTACCGATAATGGAGCTGAATCAGACCGCCACTACGATTTTGATCTCTTCACTAT CGGTGCCGGAAGCGGCGGCGTCCGCGCCTCTCGCTTCGCCACTAGCTTCGGTGCATCCGCCGCCGTTTGCGAGCTTCCTTTTTCCACTATCTCTTCCGAT ACTGCTGGAGGCGTTGGAGGAACgtaagatttcttccttcttgtggcttatatcgatagctagtgaatttgactttagtagtagctataccagaatttga agcatttgcttgatgatttatggtttgattgtgttgtctactcatttttggttattttgcagGTGTGTATTGAGAGGATGTGTACCAAAGAAGTTACTTG TGTATGCATCCAAATACAGTCATGAGTTTGAAGACAGTCATGGATTTGGTTGGAAGTATGAGACTGAGCCTTCTCATGATTGGACTACTTTGATTGCTAA CAAGAATGCTGAGTTACAGCGGTTGACTGGTATTTATAAGAATATACTGAGCAAAGCTAATGTCAAGTTGATTGAAGGTCGTGGAAAGgtatgccgaggc tcggtgtttatatagttcatgagttaacctctatgtattgatttgagcttgagtatgtattttatatgtgtagGTTATAGACCCACACACTGTTGATGTA GATGGGAAAATCTATACTACGAGGAATATTCTGATTGCAGTTGGTGGACGTCCTTTCATTCCTGACATTCCAGGAAAAGAGTTTGCTATTGATTCTGATG CCGCGCTTGATTTGCCTTCCAAGCCTAAGAAAATTGCAATAGTTGGTGGTGGCTACATAGCCCTGGAGTTTGCGGGGATCTTCAATGGTCTTAACTGTGA AGTTCATGTATTTATAAGGCAAAAGAAGGTGCTGAGGGGATTTGATGAAGATgtaagtaaaaaattgagaatgacttttgctgctttcatttatccgtct ggatattttctaattgtaattgttattcttgtttcagGTCAGGGATTTCGTTGGAGAGCAGATGTCTTTAAGAGGTATTGAGTTTCACACTGAAGAATCC CCTGAAGCCATCATCAAAGCTGGAGATGGCTCGTTCTCTCTGAAGACCAGCAAGGGAACTGTTGAGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCA AGCCCAACACAAAGgtatagtgtgatttttattattttccaaaggatgtttataaaatgaaaactggtagcaaagttcatcctttaataatttgtctaag ataaactgaccactgctgccccttgtttatgactttaatggaatatgattgttcattgatgtaatgttggctgttataacagAACTTAGGGTTGGAGAAT GTTGGCGTTAAAATGGCGAAAAATGGAGCAATAGAGgtatgatccagtgtttt►acct◄agttttttt►gtcacttaggatttctattattgcattgtgc acagttctcttgttatacctggttacttcttgtgattgtgctccatgtttccactttttttttgtaagGTTGACGAATATTCACAGACATCTGTTCCATC CATCTGGGCTGTTGGGGATGTTACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGGCTAAAACTTTGTTTCAAAATGAGCCA ACAAAGCCTGATTATAGgtaacataacaatcttaacttttgatgtttaaacctttgggattttttggtgattgatgagagtttttctctgtttagtctta catgctgcatcagtgatctataacattttataactgttgtctctgatggcttttatcctttctgtgttctataatcaactagAGCTGTTCCCTGCGCCGT TTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAGgtaagtaggatgatttgtcaaaaatatggtttatcatgcatgccactacataga aatattaactacgtgtttgcagGCCATAGAACAATATGGTGATGTGGATGTTTACACATCGAACTTTAGGCCATTAAAGGCTACCCTTTCAGGACTTCCA GACCGAGTATTTATGAAACTCATTGTCTGTGCAAACACCAATAAAGTTCTCGGTGTTCACATGTGTGGAGAAGATTCACCAGAAATCATCCAGgtttcat tttttaacatgattggtattctctgaaaagtaatcacggaaaacatatatgattgaatatgaattttattttacaatttttcagGGATTTGGGGTTGCAG TTAAAGCTGGTTTAACTAAGGCCGACTTTGATGCTACAGTGGGTGTTCACCCCACAGCAGCTGAGGAGTTTGTCACTATGAGGGCTCCAACCAGGAAATT CCGCAAAGACTCCTCTGAGgtttgtttgtgaacagtcaaaacttatccatctagttatttctcgtggttttgcaacatgggaaaatgattggaactgagt gagatgtgtatgtccaatttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGagaaggttgcaaaaaagattgtatttacgg cattggagccccctgataaggtattcattcaccagtttccgaagtattggtcctaattcctaaaattagaaaagacatgcaatgcattagctcataccat gcttaagtaagatgtcaattagggccaaagctttgtttctgcccaccccggaaaaatagggtagactagaattctcctccataacggtgtttgatatttg acttgcatgtttgcaggagaacattgtgtctgtgaagaagaagcttttcttttggcagagaatattttttcataatgtcgtgtgaagatatgatcgctgt cctgcaatacttttgatcgtttgacacacgaccaaattcctcgagagagagaggttgtaactattccgaaagagctctaaaactgaagctttcagttctt gtgacatcataatgaaggctgtatagatataacagtttcgagttttatttggatttgtagtatttttgttttctattgtgttgaacttgtctctttgaag tcaccacgggagacctcatatcagcatcgttgcgaatcaaatgaggttttgagttttgacaagaaattcaacacgatcaccaaatccttgagtcattatc atattcagatttcagagtctcctaccataatcatatttatggttcgactgtacattattactgtttaaaattgatttgatttttgaaaagttaaaaacta atagttgactaaaaaattcataaacaaatatatactttttaaagagatacgttttgattaataacaaaaaggaaatatatacattaagtattataattaa tatacttatataactaaaaatcactattataagtaacaatatctctaaaactttgaatggccattaaatttttcaaaaatagatagaagaaagaattttt ttaaaaaagatatatccaagagatttccaactatgataaagcaaatatgtcataattatatttattggcttatcgcgacacgatttccagattcttatta tta
Border_1 (64947_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATMACCAAWCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTGCATWRSSGWCAATTTGTTTACAGTCAGTA
CATAAGGTAAAACACTGGATCATACCTCTATTGCTCCATTTTTCGCCATTTTAACGCCAACATTCTCCAACCCTAAGTTCTGTTATAACAGCCAACATTA
CATCAATGAACAATCATATTCCATTAAAGTCATAAACAAGGGGCAGCAGTGGTCAGTTTATCTTAGACAAATTATTAAAGGATGAACTTTGCTACCAGTT
TTCATTTTATAAACATCCTTTGGAAAATAATAAAAATCACACTATACCTTTGTGTTGGGCTTGCGACCAGTTGCAAACATAACATGCGAAAATCCCTCAA
CAGTTCCCTTGCTGGTCTTCAGAGAGAACGAGCCATCTCCAGCTTTGATGATGGCTTCAGGGGATTCTTCAGTGTGAAACTCAATACCTCTTAAAGACAT
CTGCTCTCCAACGAAATCCCTGACCTGAAACAAGAATAACAATTACAATTAGAAAATATNCAGACGGATAAATGAAAGCAGCAAAAGTCATTCTCAATTT
TTTACTTACATCTTCATCAAAATCCCCTCAGCACCTTCTTTTGCCTTATAAATACATGAACTTCACAGTTAAGACCATTGAAGATCCCCGCAAACTNCAG
GGCTATGTAGCCACCACCAACTATTGCAATTTTNTTAGGCTTGGAANGCAAATCAAGCGC
| Start of BLAST Alignment: | NT 1635 / Intron 5 of 9 |
| First 15 bp Perfect Match: | NT 1635 / Intron 5 of 9 |
BLAST Details: Query Sequence: 64947_LB1 Length: (860 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g54660 68416.t05607 gluthatione reductase, chloroplast... 3237 4.9e-142 1 At1g72960 68414.t07721 root hair defective 3 GTP-binding ... 185 0.9999 1 >At3g54660 68416.t05607 gluthatione reductase, chloroplast nearly identical to SP|P42770 Glutathione reductase, chloroplast precursor (EC 1.8.1.7) (GR) (GRASE) {Arabidopsis thaliana}; identical to cDNA glutathione reductase GI:451197 Length = 3438 Minus Strand HSPs: Score = 3237 (491.7 bits), Expect = 4.9e-142, P = 4.9e-142 Identities = 651/656 (99%), Positives = 651/656 (99%), Strand = Minus / Plus Query: 860 GCGCTTGATTTGCNTTCCAAGCCTAANAAAATTGCAATAGTTGGTGGTGGCTACATAGCC 801 ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1063 GCGCTTGATTTGCCTTCCAAGCCTAAGAAAATTGCAATAGTTGGTGGTGGCTACATAGCC 1122 Query: 800 CTGNAGTTTGCGGGGATCTTCAATGGTCTTAACTGTGAAGTTCATGTATTTATAAGGCAA 741 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1123 CTGGAGTTTGCGGGGATCTTCAATGGTCTTAACTGTGAAGTTCATGTATTTATAAGGCAA 1182 Query: 740 AAGAAGGTGCTGAGGGGATTTTGATGAAGATGTAAGTAAAAAATTGAGAATGACTTTTGC 681 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1183 AAGAAGGTGCTGAGGGGATTT-GATGAAGATGTAAGTAAAAAATTGAGAATGACTTTTGC 1241 Query: 680 TGCTTTCATTTATCCGTCTGNATATTTTCTAATTGTAATTGTTATTCTTGTTTCAGGTCA 621 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1242 TGCTTTCATTTATCCGTCTGGATATTTTCTAATTGTAATTGTTATTCTTGTTTCAGGTCA 1301 Query: 620 GGGATTTCGTTGGAGAGCAGATGTCTTTAAGAGGTATTGAGTTTCACACTGAAGAATCCC 561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1302 GGGATTTCGTTGGAGAGCAGATGTCTTTAAGAGGTATTGAGTTTCACACTGAAGAATCCC 1361 Query: 560 CTGAAGCCATCATCAAAGCTGGAGATGGCTCGTTCTCTCTGAAGACCAGCAAGGGAACTG 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1362 CTGAAGCCATCATCAAAGCTGGAGATGGCTCGTTCTCTCTGAAGACCAGCAAGGGAACTG 1421 Query: 500 TTGAGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGGTATAGT 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1422 TTGAGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGGTATAGT 1481 Query: 440 GTGATTTTTATTATTTTCCAAAGGATGTTTATAAAATGAAAACTGGTAGCAAAGTTCATC 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1482 GTGATTTTTATTATTTTCCAAAGGATGTTTATAAAATGAAAACTGGTAGCAAAGTTCATC 1541 Query: 380 CTTTAATAATTTGTCTAAGATAAACTGACCACTGCTGCCCCTTGTTTATGACTTTAATGG 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1542 CTTTAATAATTTGTCTAAGATAAACTGACCACTGCTGCCCCTTGTTTATGACTTTAATGG 1601 Query: 320 AATATGATTGTTCATTGATGTAATGTTGGCTGTTATAACAGAACTTAGGGTTGGAGAATG 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1602 AATATGATTGTTCATTGATGTAATGTTGGCTGTTATAACAGAACTTAGGGTTGGAGAATG 1661 Query: 260 TTGGCGTTAAAATGGCGAAAAATGGAGCAATAGAGGTATGATCCAGTGTTTTACCT 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1662 TTGGCGTTAAAATGGCGAAAAATGGAGCAATAGAGGTATGATCCAGTGTTTTACCT 1717 >At1g72960 68414.t07721 root hair defective 3 GTP-binding (RHD3) family protein contains Pfam profile: PF05879 root hair defective 3 GTP-binding protein (RHD3) Length = 4249 Minus Strand HSPs: Score = 185 (33.8 bits), Expect = 8.9, P = 0.9999 Identities = 89/144 (61%), Positives = 89/144 (61%), Strand = Minus / Plus
Border_2 (64947_RB1)
CAAACTAGGATAAATTATCGCGCGCGGTGTCATCTATGTTACTAGATCGGGAATTGAGCTCGCGGCCGCCATGGCATATGCTAGCATGCATAATTCCTGC
AGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATCAGTGTACTCTTAACACCGCAATATTGACGTCACTTAGGATTTCT
ATTATTGCATTGGGCACAGAACTACCAAGAGCTNGAGTTCTNTANGGAC
| Start of BLAST Alignment: | NT 1631 / Intron 5 of 9 |
| First 15 bp Perfect Match: | NT 1644 / Intron 5 of 9 |
BLAST Details: Query Sequence: 64947_RB1 Length: (249 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g54660 68416.t05607 gluthatione reductase, chloroplast... 169 0.084 1 At1g78950 68414.t08416 beta-amyrin synthase, putative sim... 141 0.81 1 >At3g54660 68416.t05607 gluthatione reductase, chloroplast nearly identical to SP|P42770 Glutathione reductase, chloroplast precursor (EC 1.8.1.7) (GR) (GRASE) {Arabidopsis thaliana}; identical to cDNA glutathione reductase GI:451197 Length = 3438 Plus Strand HSPs: Score = 169 (31.4 bits), Expect = 0.087, P = 0.084 Identities = 43/53 (81%), Positives = 43/53 (81%), Strand = Plus / Plus Query: 171 ACCGCAATATTGACGTCACTTAGGATTTCTATTATTGCATTGGGCACAGAACT 223 ||| | | || |||||||||||||||||||||||||||| |||||| || Sbjct: 1714 ACCT-AGTTTTTTTGTCACTTAGGATTTCTATTATTGCATTGTGCACAGTTCT 1765 >At1g78950 68414.t08416 beta-amyrin synthase, putative similar to beta-Amyrin Synthase GI:3688600 from [Panax ginseng] and GI:8918271 from [Pisum sativum] Length = 4237 Minus Strand HSPs: Score = 141 (27.2 bits), Expect = 1.7, P = 0.81 Identities = 99/165 (60%), Positives = 99/165 (60%), Strand = Minus / Plus