At1g80260 SYNGENTA 65508
Genomic Sequence (from TAIR)
tggttcatatttaattaaagttacggtttcttcatttgattggtgaagttgcgttgtttgaagaccaaacgagtataccgcttccttcgtcatctctgac attggtggtacttgaaaatgcaactatggtaaaaatttcttagggtgatcataaactattctaaaagcatggggtcatatcatgaatagtactgattata aatccttaaagtgcaaaaatagtcaaggaagaaagtacttttacaaaagggtaattccgggtaaatgcaattgatcggcgacgcattctcctctcacagt ctctctcagtcactggctctcaaattcatactacttggcaagcttgctcgatttccctcgtacagccaaattgtgctatgggaatcaaaattaacagtcg cagaagccagtaataATGGAGTCGTTGCTTCGAGCTGATCAAACCCTAATTCCGGGAGCGATGTGTAGCCGCAGAGTTTGGACACACTCAGAACTGGCTC TTCCCTCAGTGAGCGTAACTGAATTGGATCTGgtaagcccacacaattctctcaatcttttcttttgacttgttcagtttctatgtatcctcaatttctt cgttgaatagGTGAGAGGTCTATTACAAGCTTTGCAAGGTCTGTCTAGTCCCTTCCTTTTCTGGGACCAAACTGGACAAACTTTCCGCGCCAAAAGTCAT ATACGCGTCTCTCATTTGTCTCACTCAAGCCTTCATGTTCTTCTCGCTGGGTTCCTGTATCCCGCTACATGTTTGAAACTCGTTGAGTCTATCGTTGCTG CCATTAATACCTCTCTTAGGTCTCCTCCTACCTTAATGGCATTCTCTGACTCTGTCTCCGCATGGCTTGAGGCAAgtttcctcaactttcttttcatttt gtttcttttaacatatgttgttttgctttagactaatttacatttggcattggatcagagactcagagATATTGCTTTGAAAGAGGAAGTGATGATCGAC AATTCTGATATTACTGTTACTCCAACCCTCTTGGGATTAACCAgttctttatctaggtgtgtagcctatactcttttttcatatatcaaatgctaaactc tgtgttcatgtttttatttaacggtattcttcttcttttctttccatgtacaagtctttgttcagGTGCTGAATATCTCTTACAAGTTGTACATGGTGCC ATCCCTCATACGTTTTTTGATTCAAACTCTACGATTTCCGCTGCTGAGATTGCTGTC►CATGTTCTT◄GATTATC►TTTACAAGAAGCTTGATGAAGTAT GCCTTGTACAAGGTGGTGAGgttgtgaccgtgttcatgactttctgtgttttt◄ctttttaatctttgttggtggttactttcgtaattgaattagcgat aaatatttggaccagGTGGAAGGATTTCACATGCTGTTGCAAATGTTTGCTGGAAGTTTATTGCCATATATAGAGGGTTTGGATTCATGGTTGTTTGAGG GAACTCTTGATGATCCTTGTGAAGAGgttagtgttacattgatgttcaacgcttttctttctagcaatttctgcttcaatatagagtattttgtattatg gctagcaaattgaaggtttgatctttggtacttcgcagTTGTTTTTTACAGCCAACCAATCGGTCTCCGTTGACGATGCAGAGTTTTGGGAGAAAAGCTA TCAGTTGATGAAGGTGCCCAACTCAAAATCAAATGTAACTTCACTAAACGAAAAGAAAGTAATGAGTGGACATGACGCCAACTCATCTTTAGCTTCTGAC AAAGACAAAGAGCAAAATACTCGGGTGTTATGTCCCTTATTCATTAAAGACATCTGTAAGTCTATTGTTTCTGCTGGAAAGTCACTGCAGCTAATGCAGC ATATTCCTTCCACGTCTTCAGAAAATTCTGGAAAGACTCAGTTCCATGGGCGAAATGGTTATGGGAAATCTAGCGTTGGTAGTCTCCTGACTAAAATGAG CAGCTGTAGTAGCACTGCGGACTTATCCTTGTCTGAAGTCTTTTGTTTGACACTCGCCGGCCTTATAGGCCATGGTGATCATGTCTCTAGATATCTGTGG AAAGATGAGGCGGATGAGTGGGAGATTTCTCCAACTTTAGCATCATATATAAGTGGAGAGCTTGTGAATGACATGGATAATAAAGATCTTCCAGTTCTCA CATGCTCAGAGCGAATGTGGTATAAGTTGTTGGTCGGTGCTGTGCAAGAGAAAAGAGCTATGGAGGCCAAATCAGAACTCCAGAGTGCATGCTATGCTAC AGGTGTTAAGGATGGAAATAGTGGTCTCACTGCCCAAAAGGCGTTGCAGGGGTTATTCTGTAATGAAAACCTTGTTGTTTCAGTATCTAAAATGGATCTT GAGAGGAATAGAAATGCTTGGAATGTCTTGAACTTGTCGCAAAACTATTGTCTACCCTCTCTTAATGATGAGAGTCTGTTGAGTGCTGTTTTTGAAGAAT CTGGCATGGCAGATGCTGGACTGAGTGGAACAAACTACAAATTTGGATTCCAATTTGGTAGATCTGAATATATTTCTTCTCAGGATGACACAAACCTTCT AGAAACATTATTTCCCTTTCCCACTTTGCTTCCGTCATTCCAGgtactttgatactgatgatttatgattattttatggcacttttcttcgattttctct catttgcaatagtttctgtttgcttatcttgaaatctttgtgatcaacaaaaaagccgaagctccatctgtcagaattcttacctttccaaaagaatagt acacttccttcaagagttctcagctggttgctaaagGCAGAGCCAATGGATACTCGACTTCCCGTTGTAATTATGCAGGAATGCTTCACAATTTACATAA GGAGGCAGgtagggtgatgtaatcttcaacattgctgcttgtgcctatggcatgcatactcttgttaccttctgaaagttgtgtatgttttagGTGGACT ACATTGGCAAAGTGATTTTGTCAAAACTAATGAATGACTGGAAATTGATGCACGAACTTGCTGTATTGCGCGCCATTTACTTGCTAGGTTCAGgtgcgtt ttatgtgctcaactgttttggcaatatggttgtatctgaaatcttaataaccccttaaaactttcagGGGACCTGCTGCAGCATTTTCTGACTGTCATTT TCGATAGGCTGGGCAAGGGAGAGTCATCAAATGATGATTTTGAGTTGAACATAATACTTCAGgtaaccaggtttggtgtatttttaagagacactgctct catctttatagttgttatcacttctaaaatgattccgcttgttaattgtttgcttatgtatccgtgttctgttgccgtatatgtgttcatacaccaaact tatttctaaagtgtaatggtcttctacagGAATCAATTAGAAATTCAGCTGATGCCATGCTGTTAAGCAGTCCTGATTCATTGGTGGTATCTATTTCCAG AGAAGACAGAGACAAAGATGATAAGGGTGACATAATACCCCTTTCTTCAACTCGTAAAAGCCGCGTTAACAGCTTTGGAATAGATTGTCTCGAGTCTCTC AAATTCACATACAAGgtctagagaaacaacttagtcttccatccaatccgtactggtatatctcataggccacatctatgtgtatttgaagagctgaact gttttcttttttaagGTGCCATGGCCACTTGAGCTTATTGCCAATAGTGAGGCCATTAAGAAGTATAACCAGgtaaccctttctcatccagctatttttg tggtaaacagtttgttgttcctctatgtggtaattatttaattgaaaacaggtgatgggatttttgttgaagGTCAAGCGAGCAAAATATGTGCTTGATA AAGCACGAAGGTGGATGTGGAAGgtctttgatatctctcaaactcatttctttcttcttagactgtatcccgtgacttccaaatccagtttgaaagagcc taatcagtcttttgatctatacatataaatataaagggaatcataagaatgtggttcagtttgataaacttgatgactttggtgtttgtgtatgatagGG TAAAGGCTCTGCAACAAAAATCCGCAAGCACCACTGGTTACTAGAACAAAAGCTCCTCAACTTTGTGGATGCTTTTCATCAATACGTAATGGACAGGgta ttgtccaatgctaaatgattggttataattacagtatcatttttcgttggagtaatataagtttgtgctagagttgtggcaaaatcgaaagctgatcaca tggcttgagtaagatgaaaagcttgccatgcttaactgtattttgtaagcagGTATATCACACTGCGTGGCGTGAACTGTGTGAAGCGATGGTAAAAGCA GGGTCTCTGGATGAGGTCATATATGTACATGAAACCTACTTGTTATCGATTCAGCGGCAATGCTTTGTGGTTCAAGAAAAGCTGgtaatggaccatgaag gcattaagcgacctcttaaaatgcatagtatatatttgaagttgtaggcttctaaaaacctagtgtttggtggtttttgtatagTGGGCAATCATCGCAA GTCGGATCAACATGATTCTCGGTTTAGCTCTAGAATTCTACTCAATACAACAGACACTGAGCAGCGGTGGAGCAGTTTCAGCCATCAAGGCTAGATGCGA AATGGAAATAGACCGTATAGAGAAACAATTTGAGGACTGTATTGCTTTCCTTCTCAGAgtaagtaaatcgaaaactgtgtacttgttgtattgtgaagct atatataattgattaatgcttaatgggggatggaacttgcagGTATTATCTTCGAAGCTGAATGTGGGACACTTCCCTCATTTGGCTGATTTGGTGACCA GAATCAATTACAATTATCACTACATGTCAGATACTGGAAGCTTGATGACTACTTCTGGAGCAGAGACCAACTCATCCAGACCTTGGACTGCCAAATCTGA TGTATGAatggaccgggaaattatcgcaatgttggattgtcgcaacactatcacacgtaattgttcaagcctcatgcttttcttgtgtctggtatctaat ttcctgattatgtattttctgtttataaaagttcactgttttgaattagacattgtacaaaactgctatcaaggtttaaaaaaaaaaaaacattgttaac attcttaacaagaaatcatcaaagtttaaaatctaatcgtgaccctactatgcatagtacatatattaagcattaaccaatacgacaaaagaaaaaaaaa agcattaaccaaaaacaaaaagacgataattaaggttataggttatgagtttattacgaaaagcccatttatggatgcaattaagcaaaccttgttggag gacaaaatggtcaaaagaaagaaaacgtaaaaccctaaaacatttctttaacactcgacttgtctcataaaccctttgtgtttgtagtctctctactctc taga
Border_1 (65508_LB2D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTTGCAAAGCGTCAATTTGTTTACACCACAATATAT
TATGTGTTATTAATTTGTTATTAAGAACATGGACAGCAATCTCAGCAGCGGAAATCGTAGAGTTTGAATCAAAAAACGTATGAGGGATGGCACCATGTAC
AACTTGTAAGAGATATTCAGCACCTGAACAAAGACTTGTACATGGAAAGAAAAGAAGAAGAATACCGTTAAATAAAAACATGAACACAGAGTTTAGCATT
TGATATATGAAAAAAGAGTATAGGCTACACACCTAGATAAAGAACTGGTTAATCCCAAGAGGGTTGGAGTAACAGTAATATCAGAATTGTCGATCATCAC
TTCCTCTTTCAAAGCAATATCTCTGAGTCTCTGATCCAATGCCAAATGTAAATTAGTCTAAAGCAAAACAACATATGTTAAAAGAACCAAAATGAAAAGA
AAGTTGAGGAAACTTGCCTCAAGCCATGCGGAGACAGAGTCAGAGAATGCCATTAAGGTAGGAGGAGACCTAAGAGAGGTNTAATGGCAGCACCGATAGC
TACCCCGG
Start of BLAST Alignment: | NT 935 / Intron 4 of 15 |
First 15 bp Perfect Match: | NT 851 / Exon 4 of 16 |
BLAST Details: Query Sequence: 65508_LB2D Length: (708 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g80260 68414.t08573 tubulin family protein 2362 1.2e-101 1 At1g20570 68414.t02295 tubulin family protein 1350 2.1e-55 1 At2g16460 68415.t01789 expressed protein 221 0.11 1 At5g54250 68418.t06273 cyclic nucleotide-regulated ion ch... 211 0.32 1 >At1g80260 68414.t08573 tubulin family protein Length = 4758 Minus Strand HSPs: Score = 2362 (360.4 bits), Expect = 1.2e-101, P = 1.2e-101 Identities = 518/565 (91%), Positives = 518/565 (91%), Strand = Minus / Plus Query: 699 CTATCGGTGCTGCCATTAN-ACCTCTCTTAGGTCTCCTCCTACCTTAATGGCATTCTCTG 641 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 374 CTATCGTTGCTGCCATTAATACCTCTCTTAGGTCTCCTCCTACCTTAATGGCATTCTCTG 433 Query: 640 ACTCTGTCTCCGCATGGCTTGAGGCAAGTTTCCTCAACTTTCTTTTCATTTTGGTTCTTT 581 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 434 ACTCTGTCTCCGCATGGCTTGAGGCAAGTTTCCTCAACTTTCTTTTCATTTTGTTTCTTT 493 Query: 580 TAACATATGTTGTTTTGCTTTAGACTAATTTACATTTGGCATTGGATCAGAGACTCAGAG 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 494 TAACATATGTTGTTTTGCTTTAGACTAATTTACATTTGGCATTGGATCAGAGACTCAGAG 553 Query: 520 ATATTGCTTTGAAAGAGGAAGTGATGATCGACAATTCTGATATTACTGTTACTCCAACCC 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 ATATTGCTTTGAAAGAGGAAGTGATGATCGACAATTCTGATATTACTGTTACTCCAACCC 613 Query: 460 TCTTGGGATTAACCAGTTCTTTATCTAGGTGTGTAGCCTATACTCTTTTTTCATATATCA 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 614 TCTTGGGATTAACCAGTTCTTTATCTAGGTGTGTAGCCTATACTCTTTTTTCATATATCA 673 Query: 400 AATGCTAAACTCTGTGTTCATGTTTTTATTTAACGGTATTCTTCTTCTTTTCTTTCCATG 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 674 AATGCTAAACTCTGTGTTCATGTTTTTATTTAACGGTATTCTTCTTCTTTTCTTTCCATG 733 Query: 340 TACAAGTCTTTGTTCAGGTGCTGAATATCTCTTACAAGTTGTACATGGTGCCATCCCTCA 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 734 TACAAGTCTTTGTTCAGGTGCTGAATATCTCTTACAAGTTGTACATGGTGCCATCCCTCA 793 Query: 280 TACGTTTTTTGATTCAAACTCTACGATTTCCGCTGCTGAGATTGCTGTCCATGTTCTTAA 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 794 TACGTTTTTTGATTCAAACTCTACGATTTCCGCTGCTGAGATTGCTGTCCATGTTCTTGA 853 Query: 220 TAACAAATT-AATAACACATAATATATTGTGGTGTAAACAAATTGACGCT-TTGCAAACT 163 | | | || || | | || | | || | |||| || | ||| | | Sbjct: 854 TTATCTTTACAAGAAG-CTTGATGAAGTATGCCTTGTACAAGGTGGTGAGGTTGTGACCG 912 Query: 162 TAATAAC-ACATTGCGGACGTTTTT 139 | | | || || | | |||||| Sbjct: 913 TGTTCATGACTTT-CTGT-GTTTTT 935 >At1g20570 68414.t02295 tubulin family protein Length = 4542 Minus Strand HSPs: Score = 1350 (208.6 bits), Expect = 2.1e-55, P = 2.1e-55 Identities = 398/525 (75%), Positives = 398/525 (75%), Strand = Minus / Plus
Border_2 (65508_LB1U)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGAATAACACATTGCGGACAAATTGAATTAACACATTGCGGACAATATATTATGGTGTAATATATCATTGGTTATGGGCTCATGTTATTAATTTGTTT
ACAAGAAGCTTGATGAAGTATGCCTTGTACAAGGTGGTGAGGTTGTGACCGTGTTCATGACTTTCTGTGTTTTTCTTTTTAATCTTTGTTGGTGGTTACT
TTCGTAATTGAATTAGCGATAAATATTTGGACCAGGTGGAAGGATTTCACATGCTGTTGCAAATGTTTGCTGGAAGTTTATTGCCATATATAGAGGGTTT
GGATTCATGGTTGTTTGAGGGAACTCTTGATGATCCTTGTGAAGAGGTTAGTGTTACATTGATGTTCAACGCTTTTCTTTCTAGCAATTTTCTGCTTCAA
TATAGAGTATTTTGTATTATGGCTAGCAAATTGAAGGTTTGATCCTTTGGGNCCTTCCCAGTTGGTTTTTTCAGCCAACCAATCGGTTNTCCGTGA
Start of BLAST Alignment: | NT 842 / Exon 4 of 16 |
First 15 bp Perfect Match: | NT 858 / Exon 4 of 16 |
BLAST Details: Query Sequence: 65508_LB1U Length: (696 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g80260 68414.t08573 tubulin family protein 1913 4.9e-81 1 At1g20570 68414.t02295 tubulin family protein 986 2.3e-43 2 At5g47200 68418.t05413 Ras-related GTP-binding protein, p... 208 0.36 1 At4g13100 68417.t01937 zinc finger (C3HC4-type RING finge... 205 0.48 1 >At1g80260 68414.t08573 tubulin family protein Length = 4758 Plus Strand HSPs: Score = 1913 (293.1 bits), Expect = 4.9e-81, P = 4.9e-81 Identities = 399/413 (96%), Positives = 399/413 (96%), Strand = Plus / Plus Query: 283 CATGTTATTAATT-TGTTTACAAGAAGCTTGATGAAGTATGCCTTGTACAAGGTGGTGAG 341 |||||| || ||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 843 CATGTTCTTGATTATCTTTACAAGAAGCTTGATGAAGTATGCCTTGTACAAGGTGGTGAG 902 Query: 342 GTTGTGACCGTGTTCATGACTTTCTGTGTTTTTCTTTTTAATCTTTGTTGGTGGTTACTT 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 903 GTTGTGACCGTGTTCATGACTTTCTGTGTTTTTCTTTTTAATCTTTGTTGGTGGTTACTT 962 Query: 402 TCGTAATTGAATTAGCGATAAATATTTGGACCAGGTGGAAGGATTTCACATGCTGTTGCA 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 963 TCGTAATTGAATTAGCGATAAATATTTGGACCAGGTGGAAGGATTTCACATGCTGTTGCA 1022 Query: 462 AATGTTTGCTGGAAGTTTATTGCCATATATAGAGGGTTTGGATTCATGGTTGTTTGAGGG 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1023 AATGTTTGCTGGAAGTTTATTGCCATATATAGAGGGTTTGGATTCATGGTTGTTTGAGGG 1082 Query: 522 AACTCTTGATGATCCTTGTGAAGAGGTTAGTGTTACATTGATGTTCAACGCTTTTCTTTC 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1083 AACTCTTGATGATCCTTGTGAAGAGGTTAGTGTTACATTGATGTTCAACGCTTTTCTTTC 1142 Query: 582 TAGCAATTTTCTGCTTCAATATAGAGTATTTTGTATTATGGCTAGCAAATTGAAGGTTTG 641 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1143 TAGCAATTT-CTGCTTCAATATAGAGTATTTTGTATTATGGCTAGCAAATTGAAGGTTTG 1201 Query: 642 ATCCTTTGGGNCCTTCCCAGTTGGTTTTTTCAGCCAACCAATCGGTTNTCCGT 694 ||| ||||| | ||| |||||| ||||| |||||||||||||||| ||||| Sbjct: 1202 ATC-TTTGGTAC-TTCGCAGTTGTTTTTTACAGCCAACCAATCGGT-CTCCGT 1251 >At1g20570 68414.t02295 tubulin family protein Length = 4542 Plus Strand HSPs: Score = 986 (154.0 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43 Identities = 242/286 (84%), Positives = 242/286 (84%), Strand = Plus / Plus