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At1g80260 SYNGENTA 65508

Genomic Sequence (from TAIR)
tggttcatatttaattaaagttacggtttcttcatttgattggtgaagttgcgttgtttgaagaccaaacgagtataccgcttccttcgtcatctctgac
attggtggtacttgaaaatgcaactatggtaaaaatttcttagggtgatcataaactattctaaaagcatggggtcatatcatgaatagtactgattata
aatccttaaagtgcaaaaatagtcaaggaagaaagtacttttacaaaagggtaattccgggtaaatgcaattgatcggcgacgcattctcctctcacagt
ctctctcagtcactggctctcaaattcatactacttggcaagcttgctcgatttccctcgtacagccaaattgtgctatgggaatcaaaattaacagtcg
cagaagccagtaataATGGAGTCGTTGCTTCGAGCTGATCAAACCCTAATTCCGGGAGCGATGTGTAGCCGCAGAGTTTGGACACACTCAGAACTGGCTC
TTCCCTCAGTGAGCGTAACTGAATTGGATCTGgtaagcccacacaattctctcaatcttttcttttgacttgttcagtttctatgtatcctcaatttctt
cgttgaatagGTGAGAGGTCTATTACAAGCTTTGCAAGGTCTGTCTAGTCCCTTCCTTTTCTGGGACCAAACTGGACAAACTTTCCGCGCCAAAAGTCAT
ATACGCGTCTCTCATTTGTCTCACTCAAGCCTTCATGTTCTTCTCGCTGGGTTCCTGTATCCCGCTACATGTTTGAAACTCGTTGAGTCTATCGTTGCTG
CCATTAATACCTCTCTTAGGTCTCCTCCTACCTTAATGGCATTCTCTGACTCTGTCTCCGCATGGCTTGAGGCAAgtttcctcaactttcttttcatttt
gtttcttttaacatatgttgttttgctttagactaatttacatttggcattggatcagagactcagagATATTGCTTTGAAAGAGGAAGTGATGATCGAC
AATTCTGATATTACTGTTACTCCAACCCTCTTGGGATTAACCAgttctttatctaggtgtgtagcctatactcttttttcatatatcaaatgctaaactc
tgtgttcatgtttttatttaacggtattcttcttcttttctttccatgtacaagtctttgttcagGTGCTGAATATCTCTTACAAGTTGTACATGGTGCC
ATCCCTCATACGTTTTTTGATTCAAACTCTACGATTTCCGCTGCTGAGATTGCTGTCCATGTTCTTGATTATCTTTACAAGAAGCTTGATGAAGTAT
GCCTTGTACAAGGTGGTGAGgttgtgaccgtgttcatgactttctgtgtttttctttttaatctttgttggtggttactttcgtaattgaattagcgat
aaatatttggaccagGTGGAAGGATTTCACATGCTGTTGCAAATGTTTGCTGGAAGTTTATTGCCATATATAGAGGGTTTGGATTCATGGTTGTTTGAGG
GAACTCTTGATGATCCTTGTGAAGAGgttagtgttacattgatgttcaacgcttttctttctagcaatttctgcttcaatatagagtattttgtattatg
gctagcaaattgaaggtttgatctttggtacttcgcagTTGTTTTTTACAGCCAACCAATCGGTCTCCGTTGACGATGCAGAGTTTTGGGAGAAAAGCTA
TCAGTTGATGAAGGTGCCCAACTCAAAATCAAATGTAACTTCACTAAACGAAAAGAAAGTAATGAGTGGACATGACGCCAACTCATCTTTAGCTTCTGAC
AAAGACAAAGAGCAAAATACTCGGGTGTTATGTCCCTTATTCATTAAAGACATCTGTAAGTCTATTGTTTCTGCTGGAAAGTCACTGCAGCTAATGCAGC
ATATTCCTTCCACGTCTTCAGAAAATTCTGGAAAGACTCAGTTCCATGGGCGAAATGGTTATGGGAAATCTAGCGTTGGTAGTCTCCTGACTAAAATGAG
CAGCTGTAGTAGCACTGCGGACTTATCCTTGTCTGAAGTCTTTTGTTTGACACTCGCCGGCCTTATAGGCCATGGTGATCATGTCTCTAGATATCTGTGG
AAAGATGAGGCGGATGAGTGGGAGATTTCTCCAACTTTAGCATCATATATAAGTGGAGAGCTTGTGAATGACATGGATAATAAAGATCTTCCAGTTCTCA
CATGCTCAGAGCGAATGTGGTATAAGTTGTTGGTCGGTGCTGTGCAAGAGAAAAGAGCTATGGAGGCCAAATCAGAACTCCAGAGTGCATGCTATGCTAC
AGGTGTTAAGGATGGAAATAGTGGTCTCACTGCCCAAAAGGCGTTGCAGGGGTTATTCTGTAATGAAAACCTTGTTGTTTCAGTATCTAAAATGGATCTT
GAGAGGAATAGAAATGCTTGGAATGTCTTGAACTTGTCGCAAAACTATTGTCTACCCTCTCTTAATGATGAGAGTCTGTTGAGTGCTGTTTTTGAAGAAT
CTGGCATGGCAGATGCTGGACTGAGTGGAACAAACTACAAATTTGGATTCCAATTTGGTAGATCTGAATATATTTCTTCTCAGGATGACACAAACCTTCT
AGAAACATTATTTCCCTTTCCCACTTTGCTTCCGTCATTCCAGgtactttgatactgatgatttatgattattttatggcacttttcttcgattttctct
catttgcaatagtttctgtttgcttatcttgaaatctttgtgatcaacaaaaaagccgaagctccatctgtcagaattcttacctttccaaaagaatagt
acacttccttcaagagttctcagctggttgctaaagGCAGAGCCAATGGATACTCGACTTCCCGTTGTAATTATGCAGGAATGCTTCACAATTTACATAA
GGAGGCAGgtagggtgatgtaatcttcaacattgctgcttgtgcctatggcatgcatactcttgttaccttctgaaagttgtgtatgttttagGTGGACT
ACATTGGCAAAGTGATTTTGTCAAAACTAATGAATGACTGGAAATTGATGCACGAACTTGCTGTATTGCGCGCCATTTACTTGCTAGGTTCAGgtgcgtt
ttatgtgctcaactgttttggcaatatggttgtatctgaaatcttaataaccccttaaaactttcagGGGACCTGCTGCAGCATTTTCTGACTGTCATTT
TCGATAGGCTGGGCAAGGGAGAGTCATCAAATGATGATTTTGAGTTGAACATAATACTTCAGgtaaccaggtttggtgtatttttaagagacactgctct
catctttatagttgttatcacttctaaaatgattccgcttgttaattgtttgcttatgtatccgtgttctgttgccgtatatgtgttcatacaccaaact
tatttctaaagtgtaatggtcttctacagGAATCAATTAGAAATTCAGCTGATGCCATGCTGTTAAGCAGTCCTGATTCATTGGTGGTATCTATTTCCAG
AGAAGACAGAGACAAAGATGATAAGGGTGACATAATACCCCTTTCTTCAACTCGTAAAAGCCGCGTTAACAGCTTTGGAATAGATTGTCTCGAGTCTCTC
AAATTCACATACAAGgtctagagaaacaacttagtcttccatccaatccgtactggtatatctcataggccacatctatgtgtatttgaagagctgaact
gttttcttttttaagGTGCCATGGCCACTTGAGCTTATTGCCAATAGTGAGGCCATTAAGAAGTATAACCAGgtaaccctttctcatccagctatttttg
tggtaaacagtttgttgttcctctatgtggtaattatttaattgaaaacaggtgatgggatttttgttgaagGTCAAGCGAGCAAAATATGTGCTTGATA
AAGCACGAAGGTGGATGTGGAAGgtctttgatatctctcaaactcatttctttcttcttagactgtatcccgtgacttccaaatccagtttgaaagagcc
taatcagtcttttgatctatacatataaatataaagggaatcataagaatgtggttcagtttgataaacttgatgactttggtgtttgtgtatgatagGG
TAAAGGCTCTGCAACAAAAATCCGCAAGCACCACTGGTTACTAGAACAAAAGCTCCTCAACTTTGTGGATGCTTTTCATCAATACGTAATGGACAGGgta
ttgtccaatgctaaatgattggttataattacagtatcatttttcgttggagtaatataagtttgtgctagagttgtggcaaaatcgaaagctgatcaca
tggcttgagtaagatgaaaagcttgccatgcttaactgtattttgtaagcagGTATATCACACTGCGTGGCGTGAACTGTGTGAAGCGATGGTAAAAGCA
GGGTCTCTGGATGAGGTCATATATGTACATGAAACCTACTTGTTATCGATTCAGCGGCAATGCTTTGTGGTTCAAGAAAAGCTGgtaatggaccatgaag
gcattaagcgacctcttaaaatgcatagtatatatttgaagttgtaggcttctaaaaacctagtgtttggtggtttttgtatagTGGGCAATCATCGCAA
GTCGGATCAACATGATTCTCGGTTTAGCTCTAGAATTCTACTCAATACAACAGACACTGAGCAGCGGTGGAGCAGTTTCAGCCATCAAGGCTAGATGCGA
AATGGAAATAGACCGTATAGAGAAACAATTTGAGGACTGTATTGCTTTCCTTCTCAGAgtaagtaaatcgaaaactgtgtacttgttgtattgtgaagct
atatataattgattaatgcttaatgggggatggaacttgcagGTATTATCTTCGAAGCTGAATGTGGGACACTTCCCTCATTTGGCTGATTTGGTGACCA
GAATCAATTACAATTATCACTACATGTCAGATACTGGAAGCTTGATGACTACTTCTGGAGCAGAGACCAACTCATCCAGACCTTGGACTGCCAAATCTGA
TGTATGAatggaccgggaaattatcgcaatgttggattgtcgcaacactatcacacgtaattgttcaagcctcatgcttttcttgtgtctggtatctaat
ttcctgattatgtattttctgtttataaaagttcactgttttgaattagacattgtacaaaactgctatcaaggtttaaaaaaaaaaaaacattgttaac
attcttaacaagaaatcatcaaagtttaaaatctaatcgtgaccctactatgcatagtacatatattaagcattaaccaatacgacaaaagaaaaaaaaa
agcattaaccaaaaacaaaaagacgataattaaggttataggttatgagtttattacgaaaagcccatttatggatgcaattaagcaaaccttgttggag
gacaaaatggtcaaaagaaagaaaacgtaaaaccctaaaacatttctttaacactcgacttgtctcataaaccctttgtgtttgtagtctctctactctc
taga

Border_1 (65508_LB2D)

GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTTGCAAAGCGTCAATTTGTTTACACCACAATATAT
TATGTGTTATTAATTTGTTATTAAGAACATGGACAGCAATCTCAGCAGCGGAAATCGTAGAGTTTGAATCAAAAAACGTATGAGGGATGGCACCATGTAC
AACTTGTAAGAGATATTCAGCACCTGAACAAAGACTTGTACATGGAAAGAAAAGAAGAAGAATACCGTTAAATAAAAACATGAACACAGAGTTTAGCATT
TGATATATGAAAAAAGAGTATAGGCTACACACCTAGATAAAGAACTGGTTAATCCCAAGAGGGTTGGAGTAACAGTAATATCAGAATTGTCGATCATCAC
TTCCTCTTTCAAAGCAATATCTCTGAGTCTCTGATCCAATGCCAAATGTAAATTAGTCTAAAGCAAAACAACATATGTTAAAAGAACCAAAATGAAAAGA
AAGTTGAGGAAACTTGCCTCAAGCCATGCGGAGACAGAGTCAGAGAATGCCATTAAGGTAGGAGGAGACCTAAGAGAGGTNTAATGGCAGCACCGATAGC
TACCCCGG

Start of BLAST Alignment:NT 935 / Intron 4 of 15
First 15 bp Perfect Match:NT 851 / Exon 4 of 16
BLAST Details:
Query Sequence: 65508_LB2D 
Length: (708 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g80260 68414.t08573 tubulin family protein                 2362  1.2e-101  1
At1g20570 68414.t02295 tubulin family protein                 1350  2.1e-55   1
At2g16460 68415.t01789 expressed protein                       221  0.11      1
At5g54250 68418.t06273 cyclic nucleotide-regulated ion ch...   211  0.32      1


>At1g80260 68414.t08573 tubulin family protein
        Length = 4758

  Minus Strand HSPs:

 Score = 2362 (360.4 bits), Expect = 1.2e-101, P = 1.2e-101
 Identities = 518/565 (91%), Positives = 518/565 (91%), Strand = Minus / Plus

Query:   699 CTATCGGTGCTGCCATTAN-ACCTCTCTTAGGTCTCCTCCTACCTTAATGGCATTCTCTG 641
             |||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct:   374 CTATCGTTGCTGCCATTAATACCTCTCTTAGGTCTCCTCCTACCTTAATGGCATTCTCTG 433

Query:   640 ACTCTGTCTCCGCATGGCTTGAGGCAAGTTTCCTCAACTTTCTTTTCATTTTGGTTCTTT 581
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct:   434 ACTCTGTCTCCGCATGGCTTGAGGCAAGTTTCCTCAACTTTCTTTTCATTTTGTTTCTTT 493

Query:   580 TAACATATGTTGTTTTGCTTTAGACTAATTTACATTTGGCATTGGATCAGAGACTCAGAG 521
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   494 TAACATATGTTGTTTTGCTTTAGACTAATTTACATTTGGCATTGGATCAGAGACTCAGAG 553

Query:   520 ATATTGCTTTGAAAGAGGAAGTGATGATCGACAATTCTGATATTACTGTTACTCCAACCC 461
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   554 ATATTGCTTTGAAAGAGGAAGTGATGATCGACAATTCTGATATTACTGTTACTCCAACCC 613

Query:   460 TCTTGGGATTAACCAGTTCTTTATCTAGGTGTGTAGCCTATACTCTTTTTTCATATATCA 401
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   614 TCTTGGGATTAACCAGTTCTTTATCTAGGTGTGTAGCCTATACTCTTTTTTCATATATCA 673

Query:   400 AATGCTAAACTCTGTGTTCATGTTTTTATTTAACGGTATTCTTCTTCTTTTCTTTCCATG 341
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   674 AATGCTAAACTCTGTGTTCATGTTTTTATTTAACGGTATTCTTCTTCTTTTCTTTCCATG 733

Query:   340 TACAAGTCTTTGTTCAGGTGCTGAATATCTCTTACAAGTTGTACATGGTGCCATCCCTCA 281
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   734 TACAAGTCTTTGTTCAGGTGCTGAATATCTCTTACAAGTTGTACATGGTGCCATCCCTCA 793

Query:   280 TACGTTTTTTGATTCAAACTCTACGATTTCCGCTGCTGAGATTGCTGTCCATGTTCTTAA 221
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct:   794 TACGTTTTTTGATTCAAACTCTACGATTTCCGCTGCTGAGATTGCTGTCCATGTTCTTGA 853

Query:   220 TAACAAATT-AATAACACATAATATATTGTGGTGTAAACAAATTGACGCT-TTGCAAACT 163
             | |    |  || ||  | | ||  | | ||   |  ||||  ||  |   |||  | | 
Sbjct:   854 TTATCTTTACAAGAAG-CTTGATGAAGTATGCCTTGTACAAGGTGGTGAGGTTGTGACCG 912

Query:   162 TAATAAC-ACATTGCGGACGTTTTT 139
             |  | |  || || | |  ||||||
Sbjct:   913 TGTTCATGACTTT-CTGT-GTTTTT 935


>At1g20570 68414.t02295 tubulin family protein
        Length = 4542

  Minus Strand HSPs:

 Score = 1350 (208.6 bits), Expect = 2.1e-55, P = 2.1e-55
 Identities = 398/525 (75%), Positives = 398/525 (75%), Strand = Minus / Plus


Border_2 (65508_LB1U)

GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGAATAACACATTGCGGACAAATTGAATTAACACATTGCGGACAATATATTATGGTGTAATATATCATTGGTTATGGGCTCATGTTATTAATTTGTTT
ACAAGAAGCTTGATGAAGTATGCCTTGTACAAGGTGGTGAGGTTGTGACCGTGTTCATGACTTTCTGTGTTTTTCTTTTTAATCTTTGTTGGTGGTTACT
TTCGTAATTGAATTAGCGATAAATATTTGGACCAGGTGGAAGGATTTCACATGCTGTTGCAAATGTTTGCTGGAAGTTTATTGCCATATATAGAGGGTTT
GGATTCATGGTTGTTTGAGGGAACTCTTGATGATCCTTGTGAAGAGGTTAGTGTTACATTGATGTTCAACGCTTTTCTTTCTAGCAATTTTCTGCTTCAA
TATAGAGTATTTTGTATTATGGCTAGCAAATTGAAGGTTTGATCCTTTGGGNCCTTCCCAGTTGGTTTTTTCAGCCAACCAATCGGTTNTCCGTGA

Start of BLAST Alignment:NT 842 / Exon 4 of 16
First 15 bp Perfect Match:NT 858 / Exon 4 of 16
BLAST Details:
Query Sequence: 65508_LB1U 
Length: (696 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g80260 68414.t08573 tubulin family protein                 1913  4.9e-81   1
At1g20570 68414.t02295 tubulin family protein                  986  2.3e-43   2
At5g47200 68418.t05413 Ras-related GTP-binding protein, p...   208  0.36      1
At4g13100 68417.t01937 zinc finger (C3HC4-type RING finge...   205  0.48      1


>At1g80260 68414.t08573 tubulin family protein
        Length = 4758

  Plus Strand HSPs:

 Score = 1913 (293.1 bits), Expect = 4.9e-81, P = 4.9e-81
 Identities = 399/413 (96%), Positives = 399/413 (96%), Strand = Plus / Plus

Query:   283 CATGTTATTAATT-TGTTTACAAGAAGCTTGATGAAGTATGCCTTGTACAAGGTGGTGAG 341
             |||||| || ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   843 CATGTTCTTGATTATCTTTACAAGAAGCTTGATGAAGTATGCCTTGTACAAGGTGGTGAG 902

Query:   342 GTTGTGACCGTGTTCATGACTTTCTGTGTTTTTCTTTTTAATCTTTGTTGGTGGTTACTT 401
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   903 GTTGTGACCGTGTTCATGACTTTCTGTGTTTTTCTTTTTAATCTTTGTTGGTGGTTACTT 962

Query:   402 TCGTAATTGAATTAGCGATAAATATTTGGACCAGGTGGAAGGATTTCACATGCTGTTGCA 461
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   963 TCGTAATTGAATTAGCGATAAATATTTGGACCAGGTGGAAGGATTTCACATGCTGTTGCA 1022

Query:   462 AATGTTTGCTGGAAGTTTATTGCCATATATAGAGGGTTTGGATTCATGGTTGTTTGAGGG 521
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1023 AATGTTTGCTGGAAGTTTATTGCCATATATAGAGGGTTTGGATTCATGGTTGTTTGAGGG 1082

Query:   522 AACTCTTGATGATCCTTGTGAAGAGGTTAGTGTTACATTGATGTTCAACGCTTTTCTTTC 581
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1083 AACTCTTGATGATCCTTGTGAAGAGGTTAGTGTTACATTGATGTTCAACGCTTTTCTTTC 1142

Query:   582 TAGCAATTTTCTGCTTCAATATAGAGTATTTTGTATTATGGCTAGCAAATTGAAGGTTTG 641
             ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1143 TAGCAATTT-CTGCTTCAATATAGAGTATTTTGTATTATGGCTAGCAAATTGAAGGTTTG 1201

Query:   642 ATCCTTTGGGNCCTTCCCAGTTGGTTTTTTCAGCCAACCAATCGGTTNTCCGT 694
             ||| |||||  | ||| |||||| ||||| ||||||||||||||||  |||||
Sbjct:  1202 ATC-TTTGGTAC-TTCGCAGTTGTTTTTTACAGCCAACCAATCGGT-CTCCGT 1251


>At1g20570 68414.t02295 tubulin family protein
        Length = 4542

  Plus Strand HSPs:

 Score = 986 (154.0 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
 Identities = 242/286 (84%), Positives = 242/286 (84%), Strand = Plus / Plus