At1g34550 SYNGENTA 65625
Genomic Sequence (from TAIR)
aaaaacgcattgacaatcatggacttctacaccaactcaagagaaagcgttgccaaacagacctattcgccaaatcttttcaaattgaatagaaccacca atctttattttaaagaaatgaccatatgatgtaacttttcaaattttacctaggcatgcttttttgagcaggcaatttctcttcagctccagcagttctc tccgcaaggaaaggatcacagtttggcatgcataatgaattagggatcgtcttcgccaaagaactcttacaaatttgttctcattgtttagcggagttct tgtgtttgcttggattgtttaggcttagagcatcctcaatggaaggtttttagatagttcttatgcatatgaaagtagaatatgaagagagagaattaga aaaaactcttagctaagaggcttgatgatttatatatgagacacatgtctcttttatattggttcaattttctaatATGGTTAATGTGCTGGCTTTCCTC CCGGATGAGCTTAGAGAAAAGCTTATCGATGAGCAAGAAACTAGAGAGAAGTTTCAGAGATTACACAGTTATGTGCATGCTCTTTCGACTGAAGTCGCAA TGAAGCGGTTTTATGGAGCTCTGACTACAAAGGAAGGGATTTCTGGTTCGGGTGTTAATGCCACAAGTGACTGGGGTAGCTATGTTACTGAGCTAAGCTC TCTTCTTGAAAAATCTCCTAAGATTGAAgttaaattggacacatagatgagacttgttctctaatggttattgccaagcaatagcaagattagtagtgtc tagtttccataccaaactgttggtaagcgcggttctgtttggtctagtaaaacttgcttgccttgatatgaattatttgtaatttcgactaaatctcact tgttattcaactgatatgttgcttataaagattccttttgggagttggggactacagtaagtcgggacgtagcgtaacctgacatcaccttcgtgtgttt ttaacgccaatatcatgcatgacacagaaaacaaagttcgtttcacttgtcatgtaataaaatgccttcgtctgtttttgttcgttcataacttatatct caaatcatagttccaatcctcataatccacaaacgtcggtttagatcatactaatgttttagtcgttttacaatctaaactgaatactaaaccgactaaa ttcgataccaatagctctgggcatttgggtattcgggtcgcgtttgggtcatgtctttcgggttggattcggttcggatttacttcagatctgaataatt cgggtatttgttgaaaaactcgataaataaccaaaactatttcggattgaatactacttacccaaactttatccaaatatatccaaatatacataaaagt atccgtaaaacccaaaagacctgaattataacaagtttttctttaagataataacatgaaacaagatgtaaaccttattttgagcttgttccataatcca atcaatgtatatatgtcctcatgtgtatatatatgttcgggtataaaaaatactcacggatatcgggttctgttcgggtaatacccgatacccacaatta tttgaaaacagaatccgatcaggtaattagttggaaccgaagtagaacggattcagatatttcaggtcagattcggttcggttcttcgagttcagatata atgcccaggcctactaaacccgatgcataaacgacccaatatcttcttcttgttcacttgatttattaagctccaacaattaattgattattcttattca acaccattaatgtataacataactctcatccaacacctacttaatttgatgatctaatgaagttgatgttgagtaaaaaagaaaacaccaatatttcctc tgttttttttcctccttaaattaaaaaaaaaaaaccagaaaaccgaatgatccataaagaaatcgggtcgggtcagatctagcggccgactcctcctata cacagatccagaagcacacacacaaccgtataaagtttaatctctgccggaagcgcgtcgccgatcacgcgcattcatctgcatcttctcctttctctca cctaatcacatttttgtactttaatggcgaaatcgatctaattcgtccgtgaacaactataaccaaactcttcccccaaaaaaccttgcttcaaccatac ttcacacaaatccttcaccaccactcttctcgcgtctctgtgtatatatatatttggtagAGAGTGCTCATCGACGACGACAATGCTAAAATGGCTCAAT TTAGACAATCGGGAACAGATAGATTTAGTGTTCGCGGCAACGGCGGAGGAGCTTCTTCTGATCACGTAACGATCGGGATCCGAAACGGCGTCGGTGGAGC TACTAAAGGTAACAACAACAGGTGGCGAAGATCCGTGAGAGCTGATAAGATTCGTCGACTTGGAATCGGTTCTGTTGTGTTTGTTCTTTGCTTTGTGCTT CTTGTTACTGTTCTCGCTTACTGTTATATCTCTGGGTTTACTTATAATAGCTACGATGATAAAGgtcagttttttttttgttctctggatctttctgttg aagttccttagattgtttttgattagagttgtgttgtgggcagGATTTGTTGATTCATATGAGGGTGATTTTTTGACGAATGTGACTAGATTAGATCCTT CGAAAGTGCTTGAGTTTGGTCAAGGTTCAGTGATTCATGGACGAGATTCGAGGTATTGGGATAAAGATGATAGAAGAAGAGATGATGATTATAATGAGGA TGAAGTGAAAAAGGATGTACAACAAGTTCATAATCCTGTGAAGGGGATTGGTTTGTATAATGAAGCTGGAAGGAATGAGTTGAAGATGTATGAAGCTGAG TATAAAGCTACGCTTGGGAAAGGTGGTCATGAGAAAAACAATGAGGGAGTTGATAGGGATCGTGAGGATGATGATGCGATTGATTCTCATGATGGGGATG AATATGTTGATTCTGGGCATGAGGATGATAATGAAGAGGTGCATAAAGAGAAGGTTGTTCATTTGGTGACCAAGCAAGAGAATGTGGACAAGGATGATGG AGGTGTTTCAAAAATGTCACTTGGGGATTCTTCTCTTGTTAGTAAGGGTGGTAAGTCTGGGAAAACATCACGATCTGATACTAAAAGAAGAGGTCGTCGC AGATCTTCAGgtgataatttgtgatcagcttggttgtgaagtcagtgtgggtatttgctgctcatcattcatttgttgttcatatctttcagGTTCATGT GAAATGAAGCTATTGAATTCTAGTCAACCAATAGTGGAGCCCTTGAATACTCGAAAATCTGCTAGATTTTCTTTACAGTACATAGAGAAGGAAGATAAGC CTGATGAAGAAGAACAGTGGGAGCCTAGATTTGCAGGTCATCAGAGTTTACAGGAGCGAGAAGATTCCTTCGTGGCTCAAGACAAGAAAATTCATTGCGG CTTTGTCAAAGGTCCCAAAGGATCTTCAAGCACTGGGTTTGACCTGACAGAAGATGATACTAATTATATCAGTAGATGCCACATCGCTGTTAGCTCATGC ATCTTTGGCAATTCTGATCGTTTGAGGCCTCCTGCCAACAAAATGgtatgcttctgtccatcgtttagattatgtttatgttgtggtcgtttcttttcca tgttaagatttggaaactatgaccagtgagttgtgtatgtttagagtagcctacctcccatacgttggccctaagcttacatagtcagtaacagagactt gcgagttgcgacttgagttatctttgagttcgagtggcatgtgttgaactgtggatgttgttgtagactagttgctgggaataagattaaattgagcagt tttgagctaggtacacaaattgtgtgttactaatatttagatagctggcatctgaaagttggttttgtgggtgttttcatcaaccacggacagccatctg ttagaatcgcttcctcaagaacctcagaagacatatttgatctgttgtgttcgtattttccttttgattcatggctatgctatttttgttacctatgcta accttagttcttttcttttttcatttagATAAGTCGGTTGTCGAGAAAAAATGTATGCTTCATTGTGTTCGTGGACGAGATTACCATGCAAACACTTTCT GCAGAAGGACATGCCCCAGACAGAGCAGGATTCATTGGTCTGTGGAAGTTGGTTGTCGTGAAGAATCTTCCTTACGCAGATATGCGGAGGgtaggaaaaa taccaaaaatgttgccacaccgacttttcccatcagCAAGGTGAGTCTCATGTCATAACGATAACTCTCATTTTGATGGGTCTGACTAGCACATATGTTT TCCAGCAGTTGCATGTAGAGAACAGgtcagtgactcataattaagtataattgaaaaaagtaccggaaataacatcagttataaagcatgtgtatacttt tcattctgagctacaaagacaaaggttaaatgtgaaatacattgacgattagatcttgaaactggttctctggaaatatgctttggaatgtgacatgcaa tacccgctgaaaattttctcaagtcagaccagatctgtcatttgtatcaacccacacacagaaactcacatggtttatattcttccagGTACTCAATCTG GTTGGACAGCAAGTTACGACTTCAGTTGGACCCACTACTCATTCTGGAGTACTTCCTATGGCGTAAAGGTCACGAGTATGCTATATCCAATCACTATGAC CGTCATTGTTTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAAGTATAACCATACTGTTATTAATCAACAGTTTCAGTTTTACAAGGCTGATGGGC TGACCAGATTCAATGCTTCGGATCCGTTCAAGCTTCTTCCTAGCAgtaaggatctgtgtattgactgatataaaccaggattagtaccttccttggagag tgttttcattagttagtgtctttaactgctaatgggtttactcataacaagcacacagggttttgaaatcttatctagtattataaggttcatgattatt cacactagcaactggatccttaggaacagtatcttcatagttattccagcatttaggttatatgcattttgtgggtcgaatcattacctggtgttggtca tgcgtacaatacttttgtacggattgcttgcttataaatttacaatcgtctttttttgtttttatcttatctgaagATGTTCCAGAGGGGTCTTTCATAG TACGAGCTCATACTCCCATGTCGAACCTATTCTCATGTCTTTGGTTCAATGAAGTGGAACGCTTCACTCCCCGGGACCAGCTGAGCTTTGCCTATACTTA CCAGAAACTAAGAAGGATGAATCCTGATAAACCATTTAATCTTCACATGTTCAAGgtaaagatctcttttttgaaaagtcttcatgattatctaaactat tgatttgcctccatgtgtgtaagctgggtttagaattgtaatgtcaaaagtgctcttgacatgatatgaactgaagtcctcctataaactagtaatagag ccaaacatcgaatgcagtaatttgtctagtcatggagcccgtggtaatatgtaatggttgtaacctgagtcattgatattggtcatgaaactatgtaacg attgaactgtcagtagaaaatgataataccaggtcgaatatgtgttgaatccctgttggttagtataagaaccatatcctatggaacagagagggtctca aaaccgatgctcttgttcatggataaaacacaaccgatggatttgtgg◄aattatga►att◄aggttcatatttaggtctgagta►gttacgagtatcga gaaccagatttctaagtttccttatgttttgtttgtttcctcatctggatttcaggactgtgagagaagaaaaattgcaaagttgttccgtcacagATCA GACGAGAAGCGAAACCTTATACAAGCAGCAATACAATAAACAACTCTATGTTGTACCAAGCTGTATCCGTCGTGTATAGTACTTTGAGACTCTACTGCTA TATTCACATGGAGAAAAGCCACTTTTTCTTTGCTCCAGTGACTTGGAAACTGCTACAAGAAGATCCAGATGTTGTTGTACATTGGGACCGAGTCTGTTGC TTGTGGCGACAACCAGATGAGgtatatacgaaaacaatgtgaggtgatttgtagatttagGCGGCGTTAAGAGTTGAAACTTTGAAAGAAGAAGAAAAGG GGCTTGATTAGattcatgaaagggttcctccatttttattcaattcattgcttttgtttttgtctgtatccctatcgtgcaacaatttactcttagaaaa tatactcatcccctatatattatttataaatgatttctctaagttcgctgatatcttactctctcatgtttactcacacaaacattcacataacacggta taatctacaaaagacaagattatgctcttaggagtgttttcccggttaggaagaaaatcttaattttgtcaagtttaaaactggtgttcaattttaactt ttaagatctttttgattttttaaaaattcatatgaggttactatgtactcgataatatcggattctgatctgggcgaattgatcaggagagctaatctaa tcgtgtgagacagagactcctatgatcagtaaacattgtttaagagacgttagatcgtagtattcattgatgttgtgaaatccgaagctgataagtgttt tgga
Border_1 (65625_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTAACACCACAAATCCAT
CGGTTGTGTTTTATCCATGAACAAGAGCATCGGTTTTGAGACCCTCTCTGTTCCATAGGATATGGTTCTTATACTAACCAACAGGGATTCAACACATATT
CGACCTGGTATTATCATTTTCTACTGACAGTTCAATCGTTACATAGTTTCATGACCAATATCAATGACTCAGGTTACAACCATTACATATTACCACGGGC
TC
| Start of BLAST Alignment: | NT 5859 / Intron 8 of 9 |
| First 15 bp Perfect Match: | NT 5372 / Intron 8 of 9 |
BLAST Details: Query Sequence: 65625_LB1 Length: (402 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g34550 68414.t03868 expressed protein contains Pfam pr... 1089 1.8e-43 1 At5g28415 68418.t03144 copia-like retrotransposon family ... 170 0.9998 1 >At1g34550 68414.t03868 expressed protein contains Pfam profile PF04765: Protein of unknown function (DUF616); expression supported by MPSS Length = 5831 Minus Strand HSPs: Score = 1089 (169.4 bits), Expect = 1.8e-43, P = 1.8e-43 Identities = 221/225 (98%), Positives = 221/225 (98%), Strand = Minus / Plus Query: 402 GAGCCCGTGGTAATATGTAATGGTTGTAACCTGAGTCATTGATATTGGTCATGAAACTAT 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5159 GAGCCCGTGGTAATATGTAATGGTTGTAACCTGAGTCATTGATATTGGTCATGAAACTAT 5218 Query: 342 GTAACGATTGAACTGTCAGTAGAAAATGATAATACCAGGTCGAATATGTGTTGAATCCCT 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5219 GTAACGATTGAACTGTCAGTAGAAAATGATAATACCAGGTCGAATATGTGTTGAATCCCT 5278 Query: 282 GTTGGTTAGTATAAGAACCATATCCTATGGAACAGAGAGGGTCTCAAAACCGATGCTCTT 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5279 GTTGGTTAGTATAAGAACCATATCCTATGGAACAGAGAGGGTCTCAAAACCGATGCTCTT 5338 Query: 222 GTTCATGGATAAAACACAACCGATGGATTTGTGGTGTTACAAATT 178 |||||||||||||||||||||||||||||||||| ||| |||| Sbjct: 5339 GTTCATGGATAAAACACAACCGATGGATTTGTGGAATTATGAATT 5383 >At5g28415 68418.t03144 copia-like retrotransposon family has a 1.2e-302 P-value blast match to dbj|BAA78425.1| polyprotein [Arabidopsis thaliana] (AtRE1) (Ty1_Copia-element) Length = 4427 Plus Strand HSPs: Score = 170 (31.6 bits), Expect = 8.6, P = 0.9998 Identities = 144/241 (59%), Positives = 144/241 (59%), Strand = Plus / Plus
Border_2 (65625_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAWTYCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTTAATTTGTTACGAGTATCGAGAAC
CAGATTTCTAAGTTTCCTTATGTTTTGTTTGTTTCCTCATCTGGATTTCAGGACTGTGAGAGAAGAAAAATTGCAAAGTTGTTCCGTCACAGATCAGACG
AGAAGCGAAACCTTATACAAGCAGCAATACAATAAACAACTCTATGTTGTACCAAGCTGTATCCGTCGTGTATAGTACTTTGAGACTCTACTGCTATATT
CACATGGAGAAAAGCCACTTTTTCTTTGCTCCAGTGACTTGGAAACTGCTACAAGAAGATCCAGATGTTGTTGTACATTGGGACCGAGTCTGTTGCTTGT
GGCGACAACCAGATGAGGTATATACGAAAACAATGTGAGGTGATTTGTAGATTTAGGCGGCGTTAAGAGTTGAAACTTTGAAAGAAGAAGAAAAGGGGCT
TGATTAGATTCATGAAAGGGTTCCTCCATTTTTATTCAATTCATTGCTTTTGTTTTTGTCTGTATCCCTATCGTGCAACAATTTACTCTTAGAAAATATA
CTCATCCCCTATATATTATTTATAAATGATTTCTCTAAGTTCGCTGATATCTTACTCTCTCATGTTTACTCACACAAACATTCACATAACACGGTATAAT
CTACAAAAGACAAGATTATGCTCTTA
| Start of BLAST Alignment: | NT 5380 / Intron 8 of 9 |
| First 15 bp Perfect Match: | NT 5406 / Intron 8 of 9 |
BLAST Details: Query Sequence: 65625_LB2 Length: (826 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g34550 68414.t03868 expressed protein contains Pfam pr... 2137 4.5e-91 1 At4g09630 68417.t01510 expressed protein contains Pfam pr... 389 5.1e-15 2 At4g08750 68417.t01377 RNA recognition motif (RRM)-contai... 211 0.38 1 At2g26250 68415.t02945 beta-ketoacyl-CoA synthase family ... 205 0.60 1 >At1g34550 68414.t03868 expressed protein contains Pfam profile PF04765: Protein of unknown function (DUF616); expression supported by MPSS Length = 5831 Plus Strand HSPs: Score = 2137 (326.7 bits), Expect = 4.5e-91, P = 4.5e-91 Identities = 441/452 (97%), Positives = 441/452 (97%), Strand = Plus / Plus Query: 159 ATTAAGTTG-TCTA-AGCGT-TAATTTGTTACGAGTATCGAGAACCAGATTTCTAAGTTT 215 |||| ||| | | || || | | | ||||||||||||||||||||||||||||||||| Sbjct: 5381 ATTAGGTTCATATTTAG-GTCTGAGTAGTTACGAGTATCGAGAACCAGATTTCTAAGTTT 5439 Query: 216 CCTTATGTTTTGTTTGTTTCCTCATCTGGATTTCAGGACTGTGAGAGAAGAAAAATTGCA 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5440 CCTTATGTTTTGTTTGTTTCCTCATCTGGATTTCAGGACTGTGAGAGAAGAAAAATTGCA 5499 Query: 276 AAGTTGTTCCGTCACAGATCAGACGAGAAGCGAAACCTTATACAAGCAGCAATACAATAA 335 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5500 AAGTTGTTCCGTCACAGATCAGACGAGAAGCGAAACCTTATACAAGCAGCAATACAATAA 5559 Query: 336 ACAACTCTATGTTGTACCAAGCTGTATCCGTCGTGTATAGTACTTTGAGACTCTACTGCT 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5560 ACAACTCTATGTTGTACCAAGCTGTATCCGTCGTGTATAGTACTTTGAGACTCTACTGCT 5619 Query: 396 ATATTCACATGGAGAAAAGCCACTTTTTCTTTGCTCCAGTGACTTGGAAACTGCTACAAG 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5620 ATATTCACATGGAGAAAAGCCACTTTTTCTTTGCTCCAGTGACTTGGAAACTGCTACAAG 5679 Query: 456 AAGATCCAGATGTTGTTGTACATTGGGACCGAGTCTGTTGCTTGTGGCGACAACCAGATG 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5680 AAGATCCAGATGTTGTTGTACATTGGGACCGAGTCTGTTGCTTGTGGCGACAACCAGATG 5739 Query: 516 AGGTATATACGAAAACAATGTGAGGTGATTTGTAGATTTAGGCGGCGTTAAGAGTTGAAA 575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5740 AGGTATATACGAAAACAATGTGAGGTGATTTGTAGATTTAGGCGGCGTTAAGAGTTGAAA 5799 Query: 576 CTTTGAAAGAAGAAGAAAAGGGGCTTGATTAG 607 |||||||||||||||||||||||||||||||| Sbjct: 5800 CTTTGAAAGAAGAAGAAAAGGGGCTTGATTAG 5831 >At4g09630 68417.t01510 expressed protein contains Pfam profile: PF04765 protein of unknown function (DUF616) Length = 4422 Plus Strand HSPs: Score = 389 (64.4 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15 Identities = 127/169 (75%), Positives = 127/169 (75%), Strand = Plus / Plus