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At1g34550 SYNGENTA 65625

Genomic Sequence (from TAIR)
aaaaacgcattgacaatcatggacttctacaccaactcaagagaaagcgttgccaaacagacctattcgccaaatcttttcaaattgaatagaaccacca
atctttattttaaagaaatgaccatatgatgtaacttttcaaattttacctaggcatgcttttttgagcaggcaatttctcttcagctccagcagttctc
tccgcaaggaaaggatcacagtttggcatgcataatgaattagggatcgtcttcgccaaagaactcttacaaatttgttctcattgtttagcggagttct
tgtgtttgcttggattgtttaggcttagagcatcctcaatggaaggtttttagatagttcttatgcatatgaaagtagaatatgaagagagagaattaga
aaaaactcttagctaagaggcttgatgatttatatatgagacacatgtctcttttatattggttcaattttctaatATGGTTAATGTGCTGGCTTTCCTC
CCGGATGAGCTTAGAGAAAAGCTTATCGATGAGCAAGAAACTAGAGAGAAGTTTCAGAGATTACACAGTTATGTGCATGCTCTTTCGACTGAAGTCGCAA
TGAAGCGGTTTTATGGAGCTCTGACTACAAAGGAAGGGATTTCTGGTTCGGGTGTTAATGCCACAAGTGACTGGGGTAGCTATGTTACTGAGCTAAGCTC
TCTTCTTGAAAAATCTCCTAAGATTGAAgttaaattggacacatagatgagacttgttctctaatggttattgccaagcaatagcaagattagtagtgtc
tagtttccataccaaactgttggtaagcgcggttctgtttggtctagtaaaacttgcttgccttgatatgaattatttgtaatttcgactaaatctcact
tgttattcaactgatatgttgcttataaagattccttttgggagttggggactacagtaagtcgggacgtagcgtaacctgacatcaccttcgtgtgttt
ttaacgccaatatcatgcatgacacagaaaacaaagttcgtttcacttgtcatgtaataaaatgccttcgtctgtttttgttcgttcataacttatatct
caaatcatagttccaatcctcataatccacaaacgtcggtttagatcatactaatgttttagtcgttttacaatctaaactgaatactaaaccgactaaa
ttcgataccaatagctctgggcatttgggtattcgggtcgcgtttgggtcatgtctttcgggttggattcggttcggatttacttcagatctgaataatt
cgggtatttgttgaaaaactcgataaataaccaaaactatttcggattgaatactacttacccaaactttatccaaatatatccaaatatacataaaagt
atccgtaaaacccaaaagacctgaattataacaagtttttctttaagataataacatgaaacaagatgtaaaccttattttgagcttgttccataatcca
atcaatgtatatatgtcctcatgtgtatatatatgttcgggtataaaaaatactcacggatatcgggttctgttcgggtaatacccgatacccacaatta
tttgaaaacagaatccgatcaggtaattagttggaaccgaagtagaacggattcagatatttcaggtcagattcggttcggttcttcgagttcagatata
atgcccaggcctactaaacccgatgcataaacgacccaatatcttcttcttgttcacttgatttattaagctccaacaattaattgattattcttattca
acaccattaatgtataacataactctcatccaacacctacttaatttgatgatctaatgaagttgatgttgagtaaaaaagaaaacaccaatatttcctc
tgttttttttcctccttaaattaaaaaaaaaaaaccagaaaaccgaatgatccataaagaaatcgggtcgggtcagatctagcggccgactcctcctata
cacagatccagaagcacacacacaaccgtataaagtttaatctctgccggaagcgcgtcgccgatcacgcgcattcatctgcatcttctcctttctctca
cctaatcacatttttgtactttaatggcgaaatcgatctaattcgtccgtgaacaactataaccaaactcttcccccaaaaaaccttgcttcaaccatac
ttcacacaaatccttcaccaccactcttctcgcgtctctgtgtatatatatatttggtagAGAGTGCTCATCGACGACGACAATGCTAAAATGGCTCAAT
TTAGACAATCGGGAACAGATAGATTTAGTGTTCGCGGCAACGGCGGAGGAGCTTCTTCTGATCACGTAACGATCGGGATCCGAAACGGCGTCGGTGGAGC
TACTAAAGGTAACAACAACAGGTGGCGAAGATCCGTGAGAGCTGATAAGATTCGTCGACTTGGAATCGGTTCTGTTGTGTTTGTTCTTTGCTTTGTGCTT
CTTGTTACTGTTCTCGCTTACTGTTATATCTCTGGGTTTACTTATAATAGCTACGATGATAAAGgtcagttttttttttgttctctggatctttctgttg
aagttccttagattgtttttgattagagttgtgttgtgggcagGATTTGTTGATTCATATGAGGGTGATTTTTTGACGAATGTGACTAGATTAGATCCTT
CGAAAGTGCTTGAGTTTGGTCAAGGTTCAGTGATTCATGGACGAGATTCGAGGTATTGGGATAAAGATGATAGAAGAAGAGATGATGATTATAATGAGGA
TGAAGTGAAAAAGGATGTACAACAAGTTCATAATCCTGTGAAGGGGATTGGTTTGTATAATGAAGCTGGAAGGAATGAGTTGAAGATGTATGAAGCTGAG
TATAAAGCTACGCTTGGGAAAGGTGGTCATGAGAAAAACAATGAGGGAGTTGATAGGGATCGTGAGGATGATGATGCGATTGATTCTCATGATGGGGATG
AATATGTTGATTCTGGGCATGAGGATGATAATGAAGAGGTGCATAAAGAGAAGGTTGTTCATTTGGTGACCAAGCAAGAGAATGTGGACAAGGATGATGG
AGGTGTTTCAAAAATGTCACTTGGGGATTCTTCTCTTGTTAGTAAGGGTGGTAAGTCTGGGAAAACATCACGATCTGATACTAAAAGAAGAGGTCGTCGC
AGATCTTCAGgtgataatttgtgatcagcttggttgtgaagtcagtgtgggtatttgctgctcatcattcatttgttgttcatatctttcagGTTCATGT
GAAATGAAGCTATTGAATTCTAGTCAACCAATAGTGGAGCCCTTGAATACTCGAAAATCTGCTAGATTTTCTTTACAGTACATAGAGAAGGAAGATAAGC
CTGATGAAGAAGAACAGTGGGAGCCTAGATTTGCAGGTCATCAGAGTTTACAGGAGCGAGAAGATTCCTTCGTGGCTCAAGACAAGAAAATTCATTGCGG
CTTTGTCAAAGGTCCCAAAGGATCTTCAAGCACTGGGTTTGACCTGACAGAAGATGATACTAATTATATCAGTAGATGCCACATCGCTGTTAGCTCATGC
ATCTTTGGCAATTCTGATCGTTTGAGGCCTCCTGCCAACAAAATGgtatgcttctgtccatcgtttagattatgtttatgttgtggtcgtttcttttcca
tgttaagatttggaaactatgaccagtgagttgtgtatgtttagagtagcctacctcccatacgttggccctaagcttacatagtcagtaacagagactt
gcgagttgcgacttgagttatctttgagttcgagtggcatgtgttgaactgtggatgttgttgtagactagttgctgggaataagattaaattgagcagt
tttgagctaggtacacaaattgtgtgttactaatatttagatagctggcatctgaaagttggttttgtgggtgttttcatcaaccacggacagccatctg
ttagaatcgcttcctcaagaacctcagaagacatatttgatctgttgtgttcgtattttccttttgattcatggctatgctatttttgttacctatgcta
accttagttcttttcttttttcatttagATAAGTCGGTTGTCGAGAAAAAATGTATGCTTCATTGTGTTCGTGGACGAGATTACCATGCAAACACTTTCT
GCAGAAGGACATGCCCCAGACAGAGCAGGATTCATTGGTCTGTGGAAGTTGGTTGTCGTGAAGAATCTTCCTTACGCAGATATGCGGAGGgtaggaaaaa
taccaaaaatgttgccacaccgacttttcccatcagCAAGGTGAGTCTCATGTCATAACGATAACTCTCATTTTGATGGGTCTGACTAGCACATATGTTT
TCCAGCAGTTGCATGTAGAGAACAGgtcagtgactcataattaagtataattgaaaaaagtaccggaaataacatcagttataaagcatgtgtatacttt
tcattctgagctacaaagacaaaggttaaatgtgaaatacattgacgattagatcttgaaactggttctctggaaatatgctttggaatgtgacatgcaa
tacccgctgaaaattttctcaagtcagaccagatctgtcatttgtatcaacccacacacagaaactcacatggtttatattcttccagGTACTCAATCTG
GTTGGACAGCAAGTTACGACTTCAGTTGGACCCACTACTCATTCTGGAGTACTTCCTATGGCGTAAAGGTCACGAGTATGCTATATCCAATCACTATGAC
CGTCATTGTTTATGGGAAGAGGTTGCACAAAACAAGAAGCTGAACAAGTATAACCATACTGTTATTAATCAACAGTTTCAGTTTTACAAGGCTGATGGGC
TGACCAGATTCAATGCTTCGGATCCGTTCAAGCTTCTTCCTAGCAgtaaggatctgtgtattgactgatataaaccaggattagtaccttccttggagag
tgttttcattagttagtgtctttaactgctaatgggtttactcataacaagcacacagggttttgaaatcttatctagtattataaggttcatgattatt
cacactagcaactggatccttaggaacagtatcttcatagttattccagcatttaggttatatgcattttgtgggtcgaatcattacctggtgttggtca
tgcgtacaatacttttgtacggattgcttgcttataaatttacaatcgtctttttttgtttttatcttatctgaagATGTTCCAGAGGGGTCTTTCATAG
TACGAGCTCATACTCCCATGTCGAACCTATTCTCATGTCTTTGGTTCAATGAAGTGGAACGCTTCACTCCCCGGGACCAGCTGAGCTTTGCCTATACTTA
CCAGAAACTAAGAAGGATGAATCCTGATAAACCATTTAATCTTCACATGTTCAAGgtaaagatctcttttttgaaaagtcttcatgattatctaaactat
tgatttgcctccatgtgtgtaagctgggtttagaattgtaatgtcaaaagtgctcttgacatgatatgaactgaagtcctcctataaactagtaatagag
ccaaacatcgaatgcagtaatttgtctagtcatggagcccgtggtaatatgtaatggttgtaacctgagtcattgatattggtcatgaaactatgtaacg
attgaactgtcagtagaaaatgataataccaggtcgaatatgtgttgaatccctgttggttagtataagaaccatatcctatggaacagagagggtctca
aaaccgatgctcttgttcatggataaaacacaaccgatggatttgtggaattatgaattaggttcatatttaggtctgagtagttacgagtatcga
gaaccagatttctaagtttccttatgttttgtttgtttcctcatctggatttcaggactgtgagagaagaaaaattgcaaagttgttccgtcacagATCA
GACGAGAAGCGAAACCTTATACAAGCAGCAATACAATAAACAACTCTATGTTGTACCAAGCTGTATCCGTCGTGTATAGTACTTTGAGACTCTACTGCTA
TATTCACATGGAGAAAAGCCACTTTTTCTTTGCTCCAGTGACTTGGAAACTGCTACAAGAAGATCCAGATGTTGTTGTACATTGGGACCGAGTCTGTTGC
TTGTGGCGACAACCAGATGAGgtatatacgaaaacaatgtgaggtgatttgtagatttagGCGGCGTTAAGAGTTGAAACTTTGAAAGAAGAAGAAAAGG
GGCTTGATTAGattcatgaaagggttcctccatttttattcaattcattgcttttgtttttgtctgtatccctatcgtgcaacaatttactcttagaaaa
tatactcatcccctatatattatttataaatgatttctctaagttcgctgatatcttactctctcatgtttactcacacaaacattcacataacacggta
taatctacaaaagacaagattatgctcttaggagtgttttcccggttaggaagaaaatcttaattttgtcaagtttaaaactggtgttcaattttaactt
ttaagatctttttgattttttaaaaattcatatgaggttactatgtactcgataatatcggattctgatctgggcgaattgatcaggagagctaatctaa
tcgtgtgagacagagactcctatgatcagtaaacattgtttaagagacgttagatcgtagtattcattgatgttgtgaaatccgaagctgataagtgttt
tgga

Border_1 (65625_LB1)

GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTAACACCACAAATCCAT
CGGTTGTGTTTTATCCATGAACAAGAGCATCGGTTTTGAGACCCTCTCTGTTCCATAGGATATGGTTCTTATACTAACCAACAGGGATTCAACACATATT
CGACCTGGTATTATCATTTTCTACTGACAGTTCAATCGTTACATAGTTTCATGACCAATATCAATGACTCAGGTTACAACCATTACATATTACCACGGGC
TC

Start of BLAST Alignment:NT 5859 / Intron 8 of 9
First 15 bp Perfect Match:NT 5372 / Intron 8 of 9
BLAST Details:
Query Sequence: 65625_LB1 
Length: (402 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g34550 68414.t03868 expressed protein contains Pfam pr...  1089  1.8e-43   1
At5g28415 68418.t03144 copia-like retrotransposon family ...   170  0.9998    1


>At1g34550 68414.t03868 expressed protein contains Pfam profile PF04765:
           Protein of unknown function (DUF616); expression supported by MPSS
        Length = 5831

  Minus Strand HSPs:

 Score = 1089 (169.4 bits), Expect = 1.8e-43, P = 1.8e-43
 Identities = 221/225 (98%), Positives = 221/225 (98%), Strand = Minus / Plus

Query:   402 GAGCCCGTGGTAATATGTAATGGTTGTAACCTGAGTCATTGATATTGGTCATGAAACTAT 343
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  5159 GAGCCCGTGGTAATATGTAATGGTTGTAACCTGAGTCATTGATATTGGTCATGAAACTAT 5218

Query:   342 GTAACGATTGAACTGTCAGTAGAAAATGATAATACCAGGTCGAATATGTGTTGAATCCCT 283
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  5219 GTAACGATTGAACTGTCAGTAGAAAATGATAATACCAGGTCGAATATGTGTTGAATCCCT 5278

Query:   282 GTTGGTTAGTATAAGAACCATATCCTATGGAACAGAGAGGGTCTCAAAACCGATGCTCTT 223
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  5279 GTTGGTTAGTATAAGAACCATATCCTATGGAACAGAGAGGGTCTCAAAACCGATGCTCTT 5338

Query:   222 GTTCATGGATAAAACACAACCGATGGATTTGTGGTGTTACAAATT 178
             ||||||||||||||||||||||||||||||||||  |||  ||||
Sbjct:  5339 GTTCATGGATAAAACACAACCGATGGATTTGTGGAATTATGAATT 5383


>At5g28415 68418.t03144 copia-like retrotransposon family has a 1.2e-302
           P-value blast match to dbj|BAA78425.1| polyprotein [Arabidopsis
           thaliana] (AtRE1) (Ty1_Copia-element)
        Length = 4427

  Plus Strand HSPs:

 Score = 170 (31.6 bits), Expect = 8.6, P = 0.9998
 Identities = 144/241 (59%), Positives = 144/241 (59%), Strand = Plus / Plus


Border_2 (65625_LB2)

GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAWTYCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTTAATTTGTTACGAGTATCGAGAAC
CAGATTTCTAAGTTTCCTTATGTTTTGTTTGTTTCCTCATCTGGATTTCAGGACTGTGAGAGAAGAAAAATTGCAAAGTTGTTCCGTCACAGATCAGACG
AGAAGCGAAACCTTATACAAGCAGCAATACAATAAACAACTCTATGTTGTACCAAGCTGTATCCGTCGTGTATAGTACTTTGAGACTCTACTGCTATATT
CACATGGAGAAAAGCCACTTTTTCTTTGCTCCAGTGACTTGGAAACTGCTACAAGAAGATCCAGATGTTGTTGTACATTGGGACCGAGTCTGTTGCTTGT
GGCGACAACCAGATGAGGTATATACGAAAACAATGTGAGGTGATTTGTAGATTTAGGCGGCGTTAAGAGTTGAAACTTTGAAAGAAGAAGAAAAGGGGCT
TGATTAGATTCATGAAAGGGTTCCTCCATTTTTATTCAATTCATTGCTTTTGTTTTTGTCTGTATCCCTATCGTGCAACAATTTACTCTTAGAAAATATA
CTCATCCCCTATATATTATTTATAAATGATTTCTCTAAGTTCGCTGATATCTTACTCTCTCATGTTTACTCACACAAACATTCACATAACACGGTATAAT
CTACAAAAGACAAGATTATGCTCTTA

Start of BLAST Alignment:NT 5380 / Intron 8 of 9
First 15 bp Perfect Match:NT 5406 / Intron 8 of 9
BLAST Details:
Query Sequence: 65625_LB2 
Length: (826 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g34550 68414.t03868 expressed protein contains Pfam pr...  2137  4.5e-91   1
At4g09630 68417.t01510 expressed protein contains Pfam pr...   389  5.1e-15   2
At4g08750 68417.t01377 RNA recognition motif (RRM)-contai...   211  0.38      1
At2g26250 68415.t02945 beta-ketoacyl-CoA synthase family ...   205  0.60      1


>At1g34550 68414.t03868 expressed protein contains Pfam profile PF04765:
           Protein of unknown function (DUF616); expression supported by MPSS
        Length = 5831

  Plus Strand HSPs:

 Score = 2137 (326.7 bits), Expect = 4.5e-91, P = 4.5e-91
 Identities = 441/452 (97%), Positives = 441/452 (97%), Strand = Plus / Plus

Query:   159 ATTAAGTTG-TCTA-AGCGT-TAATTTGTTACGAGTATCGAGAACCAGATTTCTAAGTTT 215
             |||| |||  | |  || || | | | |||||||||||||||||||||||||||||||||
Sbjct:  5381 ATTAGGTTCATATTTAG-GTCTGAGTAGTTACGAGTATCGAGAACCAGATTTCTAAGTTT 5439

Query:   216 CCTTATGTTTTGTTTGTTTCCTCATCTGGATTTCAGGACTGTGAGAGAAGAAAAATTGCA 275
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  5440 CCTTATGTTTTGTTTGTTTCCTCATCTGGATTTCAGGACTGTGAGAGAAGAAAAATTGCA 5499

Query:   276 AAGTTGTTCCGTCACAGATCAGACGAGAAGCGAAACCTTATACAAGCAGCAATACAATAA 335
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  5500 AAGTTGTTCCGTCACAGATCAGACGAGAAGCGAAACCTTATACAAGCAGCAATACAATAA 5559

Query:   336 ACAACTCTATGTTGTACCAAGCTGTATCCGTCGTGTATAGTACTTTGAGACTCTACTGCT 395
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  5560 ACAACTCTATGTTGTACCAAGCTGTATCCGTCGTGTATAGTACTTTGAGACTCTACTGCT 5619

Query:   396 ATATTCACATGGAGAAAAGCCACTTTTTCTTTGCTCCAGTGACTTGGAAACTGCTACAAG 455
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  5620 ATATTCACATGGAGAAAAGCCACTTTTTCTTTGCTCCAGTGACTTGGAAACTGCTACAAG 5679

Query:   456 AAGATCCAGATGTTGTTGTACATTGGGACCGAGTCTGTTGCTTGTGGCGACAACCAGATG 515
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  5680 AAGATCCAGATGTTGTTGTACATTGGGACCGAGTCTGTTGCTTGTGGCGACAACCAGATG 5739

Query:   516 AGGTATATACGAAAACAATGTGAGGTGATTTGTAGATTTAGGCGGCGTTAAGAGTTGAAA 575
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  5740 AGGTATATACGAAAACAATGTGAGGTGATTTGTAGATTTAGGCGGCGTTAAGAGTTGAAA 5799

Query:   576 CTTTGAAAGAAGAAGAAAAGGGGCTTGATTAG 607
             ||||||||||||||||||||||||||||||||
Sbjct:  5800 CTTTGAAAGAAGAAGAAAAGGGGCTTGATTAG 5831


>At4g09630 68417.t01510 expressed protein contains Pfam profile: PF04765
           protein of unknown function (DUF616)
        Length = 4422

  Plus Strand HSPs:

 Score = 389 (64.4 bits), Expect = 5.1e-15, Sum P(2) = 5.1e-15
 Identities = 127/169 (75%), Positives = 127/169 (75%), Strand = Plus / Plus