At2g40930 SYNGENTA 66202
Genomic Sequence (from TAIR)
ttgttttttttcttaaatttataaatggtggtggatttttttggggacctatttcgaaatgactatctaaggagcgaagccagcaaggatctgtttcaga gagaaaaaaaagaggttccgactttttgttagcgagcggctcactctactttgtctcccccaaaaaagccgttagggtttatcatatccaccgccttgct ttactctcgccggagtcgtacggcgaagcacggttgttcggcgttgtctcagctttagattcttctcttcatagctagaattcgcgaaagctgactttag ctgaaacgaatttctcctaattttcgagatATGGCGGAGGTATCGATGGGAAGCAGCAGTAGCAGCACGGATCTGTCTCCCGAGGAAGAGCGAGTTTTCA TCAGAGACATTGCTATTGCTGCTGAGGCTAATAGTAAAGAAGGCGATACATTTTATCTCATCACTCAGAGgtttataaagctttgatttttgctccctat ggtcacttgtagcttgaatttatcaaattcccaagagttatatctatctgttcgtcttgtttggttgccttggtttcggacttggttagggttagagtta cgattagggattgggttatctgtagtagttgatgagattagtttgagcatttcataaccttttccaaagaactgtcttttattgactcatgtttatgggt attgtattagattacaaccattgtgataaagtttgaattttctcttatggtacttctgctgagaacattctctctcttttctgtccagATGGTGGCAAGA ATGGATTGAGTATGTGAATCAAGACCAACCATGTAACACAAATGATGGGTCTTCACTGTCAGAGCATTGCGACTCTCCTGGTTCAAGCACTCTAAAGAAG CCTTCTAGGATTGATAACTCTGATTTGATCTATGATTCTTCGCTGGAGGACCCGAGTAATACCAGTGAGATTATTGAAACACTTCAGGAAGGTCGTGATT ATGTTTTGCTCCCTCAAGAAGTGTGGAACCAATTGCGTTCATGgtgagttttaagtgtagaagaattgaactgatattaaattttacgtctcttcatctt atgtgggctagacttatttttatccctattctagtgcttttgattttccttggttatctttggtatgttgggtcatgtttatctaacattcctcaaatgg ataatgctaaggttaagtcagatgtgtagctctaccaagttcatcttgtatgcacctgatgttatttagttgctttctctcctatgttgatttgtaatgc ataatatgaaactaataacgcaatctcttggttttcttatttactacactatagtttggcttttttcacttaaactgattatatggttcttatggactat tgcttctgttttataagGTACGGGGGTGGTCCAACTCTGGCACGGAGAGTCATTAGCTCAGGTCTCTCTCAAACAGAATTGGCTGTAGAGGTTTACCCTT TACGTCTTCAGCTACTTCTGATGCCAAAAAGTGACCATAGTGCCATAAGAATTAGCAAAAAGgttatcctcttttctgttctttttttttctttgttcat tacttgaaaatctgaactcgtttagtctgctacttcattgaactatcaaactttgttgtgcagGAAACTATCAGAGAGCTCCATCGAAGAGCCTGTGAAA TTTTTGACCTCGACTCAGAGCATgtaaagatctgatattcctatgttattaaacagcccgtttcaataatacttttggtattcttttctttccctttctc tttcttacatgagcattttctatcatgtagGTACGCATTTGGGATTACTACGGCCACCAAAAGTATTCTTTGATGAATGACTTAGATAAGACACTGGACG ATGCTAACCTACAAATGGATCAGGATgtgagttcacttcttcttcttcttctttttgctttcaaagttattagctatttgaatataaattttttatgctt cagtccgattgtttagttagcctaagcttaaggttttatagctctctgacttttatcttttctggtgttcttactgactcgttaactttcccactgattt tgtgtctgtcgtttaaaaacagATTTTGGTGGAGGTGCTTGACATCAATGGTACATTATCAAGTGCTCACATTCAATCTGCTCAAGAGAACGGATTGGTG GATGGAGACTCTACTTCTATTCTCATTGAGCCTTCTAAATCGAGCTTGGCTGCCGCAGGAGGGTTCTCTTCAAGCAGGAATGCATTCAGAACTGGTAGTG TAGAAGTTTCACAATCTTTTGATAACACATACAGTAGCACTGGCGTCACCACTAGGGGATCCACAGCTGGCTTGACAGGGCTGCTAAATCTTGGGAATAC TTGTTTCATGAATAGTGCGATTCAGTGTCTGGTTCATACACCTGAGTTTGCTAGTTACTTTCAAGAAGATTATCATCAAGAAATAAATTGGCAAAACCCT CTTGGAATGGTGgtaagttcctcttgaagttctttgctactcataaatctgatggatacataagtgtgtgtgtaggtttaagtgtataggtatgcttaga catcattggttcacttgtgtttccctgttgcacgtaaaatcttttgcagtattgtatgtttggggttgtgctttcgtcccaaacattcttgataggctta attttgcatataaatggaataacgttggaatatataagacatcttatatcatcagaagttacattagaagttgattagggtagtgttccttggcaggtaa tcagtgttattttctcgcgtagatcacaagcattgtttctttctgagatattgagtagttgatttcagatcatttcttgactgtattgaaatcattttgc acagGGGGAATTAGCTCTCGCATTTGGTGACTTGCTCAGGAAGTTATGGGCTCCTGGGCGGACACCAATTGCACCTCGTCCATTCAAAGCTAAACTTGCT CGCTTTGCTCCTCAATTTAGTGGGTACAATCAACATGATTCGCAGgtttgtgagactagccagatattttctttaacctgaatttacattgtagctcaag gaattcgagtttttcattttgcagGAGCTTTTAGCGTTTCTGCTGGATGGTCTTCACGAGGACCTAAATCGTGTTAAACACAAACCATATATAAATTCTC GAGACGCAGATGGGCGCCCTGATGAAGAAGTTGCTGATGAGTTCTGGAAAAATCATATTGCTCGTAATGACTCAATAATAGTTGATGTTTGTCAGgtcag ctgtatatcttttagaaaatccaacgcttctctgtttatcaactcatggcattgaaactgatactagtattgtggattaggcttgcatttggttataacg tctaggaatctgctgtatggtcactcaactaatagacacgagtaaccgacattccagtcccttttgctttttagtggctctgtagaaagttaattatatc agaagagttaaattggcctagtaaaaatactgtatacatttgcaattttcacagaaacacggtatttgaagagggtacataacttgtctctgttcctatt gaatttagtcttgatatttatgttaatctcggttgtgtgagtgcatccatcatgtatcagctttatatgtagctgatttttagcttgtgattcagaccca gggtatattgttattttttgttttggttttaatttttaatactgtggggaatctcattctcctactctgtttgtcaactcacagGGCCAATATAAGTCAA CATTGGTGTGTCCAATCTGCAACAAGGTTTCTGTAACGTTTGATCCCTTCATGTACCTGTCTTTGCCGCTGCAGTTCAACACAACACGAGCAATAACAGT CACAGTTTTTTCTTGTGATAAAACTGCCTTACCTTCCACTATCACAGTCAATGTTTCAAAGCAGGGACGTTGCAGAGACTTGATCCAGGCATTAACAAAT GCTTGTTCCTTGAAGCAAAGTGAAGAGCTGAAACTTGCAGAGgtttgtggcttcaagtgcgtttttgagtaagatgttgatcttttggcttccgcttatc taagtttaatatgtttttcgcagATTCGGAATAATTTTATCCATAGATTATTTGAAGACCCTTTAATTCCGTTGTCAAGTATCAAAGATGATGACCACCT TGCTGCATACAAACTTTCAAAGTCTTCGGAGAATACGACTTTGCTTAGACTAGTACTCCGCCGCAGAGATCAgtaagttaaatatcagtctaatttgtat gaactaattctggggattagtttgaaacaacaaagtcctcttctgtactcaacatctttggatttcctttcttaaaacttcaagactttcttttctttaa ggcctcacttcttcagtctttgatttctgaataatttttgaatccttgattaatgctgatctgagaaaggtatcttatattctgtttgctctcttcttta tcttttcttgtaccatgttttagGAAAGCTGGGGAACGTGAAAGTACAGTACAATTGAAACCCTGTGGAACACCTCTTCTCTCATCAGCTTCATGCGGAG ATGCACTCACCAAAGGAAAAATCCATTGCCTCGTCCAGAATATGCTTTCACCTTTTCGGAGGGAAGAATCTGTGGGCAAAAAAGGAAATTCTGATTCTAG CATCCCCGAGAGAAGGTCAGCTCGATTTAATAATACTGAGGAAGAAGATAAAGTTGGTGGACTGAAAAAAGCCAAGAAAAGCAACTCCTCCGACTTGGGT GCTTCTAAATTATCCCTGCAACTCATTGATGAAGACAACAAAACGATTAATCTGCCAGACAATGAAGCAGAAGCTATGAAATTACCGTCATCAGCTACTG TAACTATATATTTGGATTGGACACCAGAACTCTCTGGTATGTATGATATAACTTGCCTGGAGAGTTTGCCTGAAGTACTCAAATACGGACCTACTACCAA GAAGGCTCGTTCAGAACCTCTTTCTTTATATGCATGTTTGGAAGCGTTTCTACGCGAAGAGCCTTTGGTACCTGACGAAATGTGgtaagcagtct►t◄tt ctccttatccttcctgtgagac►tcatt◄ttttatggtttgtggtaaaagttgaactacgcattactacaagatgatgaatgatgttcagaaattgctag tgtctactacggatggaagttgaacacactgtatttttgcagtagattttagccagtatcttctacttagctgactaaatcaatcaatggtatcatttct ctttttttgaagGTTCTGTCCACAATGCAATGAAAGAAGGCAGGCAAGCAAAAAGCTTGATCTGTGGAGGCTTCCTGAGGTCTTAGTCATACATCTAAAG AGATTCTCATACAGCAGGTCCATGAAGCATAAGTTGGAAACATTTGTTAACTTTCCCATTCATGACTTAGATCTAACAAAGTATGTAGCCAACAAAAACC TATCTCAACCTCAACTATATGAGCTCTATGCCTTGACCAACCATTATGGTGGTATGGGCAGCGGACACTACACTGCACATATCAAGgtcagttcgaacaa ctaaactttttcattctgtttccatttctgagtttcttgcttgtttttcttatgtttattatcgaatatggtctgcagCTTTTGGACGACAGTAGGTGGT ATAACTTCGATGATAGCCATATATCACACATAAACGAAGATGATGTGAAGTCAGGTGCTGCATATGTGCTCTTCTACAGGAGGAAGTCTGATGCAGGCGG AAAAATGACATAAgtctgctcaaaacgacaatctccgaggtaacaaataccaaatttaattctaaaaagattcttaaaagaagtttagttagatcactga aacgtagttgtggacttgtgtttacgcgtcttgcaggttccagtagtaatctctacacagctgtctgcaacttggaacccataagagtgacaattaggtt tagatctattgtaaattagtggagttgggttctgagtagtttaattaacagagatgaatattgtctctccttctctgtcagtttctgtatagattgtgtt tggcataatagcagtactgttattgtcactgacacataatcacaagactcagtctaaatatgtagtagacaaggttttttatctagtttgcccaaaaaca aaaa
Border_1 (66202_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATYACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGAACGAAGACTGCTTACCACATTTCGTCAGGTACCAAAGGCTCTTCGCGTAGAAACGCTTCCAAACATGCATATAAAGAAAGAGGTTCTGAACGAGC
CTTCTTGGTAGTAGGTCCGTATTTGAGTACTTCAGGCAAACTCTCCAGGCAAGTTATATCATACATACCAGAGAGTTCTGGTGTCCAATCCAAATATATA
GTTACAGTAGCTGATGACGGTAATTTCATAGCTTCTGCTTCATTGTCTGGCAGATTAATCGTTTTGTTGTCTTCATCAATGAGTTGCAGGGATAATTTAG
AAGCACCCAAGTCGGAGGAGTTGCTTTTCTTGGCTTTTTTCAGTCCACCAACTTTATCTTCTTCCTCAGTATTATTAAATCGAGCTGACCTTCTTTC:GG
GATGCTAGAATCAGAATTTTCCTTTTTTGCCCACAGATTCTTCCCTNCNAAAAGGGGAAAGCATATTCTGGACGAGGCAATGGATTTTTCCTTTGGTGAG
TGCATCTCCCCATGAANCTNATGAGAGAANANGTGNTCCACAGGGNTTNAATTGTACTGNACTTTCACNTTCCCCNNNTTTNNNAAAAANGGNNNAANAA
AANAA
| Start of BLAST Alignment: | NT 4795 / Intron 11 of 13 |
| First 15 bp Perfect Match: | NT 4766 / Intron 11 of 13 |
BLAST Details: Query Sequence: 66202_LB2 Length: (804 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g40930 68415.t04645 ubiquitin-specific protease 5, put... 2753 4.1e-119 1 >At2g40930 68415.t04645 ubiquitin-specific protease 5, putative (UBP5) similar to GI:6648604 Length = 6106 Minus Strand HSPs: Score = 2753 (419.1 bits), Expect = 4.1e-119, P = 4.1e-119 Identities = 585/629 (93%), Positives = 585/629 (93%), Strand = Minus / Plus Query: 803 TNTTTTNTTNNNCCNT-TTTTNNNAAANNNGGGGAANGTGAAAGTNCAGTACAATTNAAN 745 | |||| || || | |||| ||| |||||| |||||||| |||||||||| || Sbjct: 4412 TCTTTTCTTGTACCATGTTTTAGGAAAGCTGGGGAACGTGAAAGTACAGTACAATTGAAA 4471 Query: 744 CCCTGTGGANCACNTNTTCTCTCATNAGNTTCATGGGGAGATGCACTCACCAAAGGAAAA 685 ||||||||| ||| | ||||||||| || |||||| |||||||||||||||||||||||| Sbjct: 4472 CCCTGTGGAACACCTCTTCTCTCATCAGCTTCATGCGGAGATGCACTCACCAAAGGAAAA 4531 Query: 684 ATCCATTGCCTCGTCCAGAATATGCTTTCCCCTTTTNGNAGGGAAGAATCTGTGGGCAAA 625 ||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||| Sbjct: 4532 ATCCATTGCCTCGTCCAGAATATGCTTTCACCTTTTCGGAGGGAAGAATCTGTGGGCAAA 4591 Query: 624 AAAGGAAAATTCTGATTCTAGCATCCC-GAAAGAAGGTCAGCTCGATTTAATAATACTGA 566 |||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 4592 AAAGGAAA-TTCTGATTCTAGCATCCCCGAGAGAAGGTCAGCTCGATTTAATAATACTGA 4650 Query: 565 GGAAGAAGATAAAGTTGGTGGACTGAAAAAAGCCAAGAAAAGCAACTCCTCCGACTTGGG 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4651 GGAAGAAGATAAAGTTGGTGGACTGAAAAAAGCCAAGAAAAGCAACTCCTCCGACTTGGG 4710 Query: 505 TGCTTCTAAATTATCCCTGCAACTCATTGATGAAGACAACAAAACGATTAATCTGCCAGA 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4711 TGCTTCTAAATTATCCCTGCAACTCATTGATGAAGACAACAAAACGATTAATCTGCCAGA 4770 Query: 445 CAATGAAGCAGAAGCTATGAAATTACCGTCATCAGCTACTGTAACTATATATTTGGATTG 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4771 CAATGAAGCAGAAGCTATGAAATTACCGTCATCAGCTACTGTAACTATATATTTGGATTG 4830 Query: 385 GACACCAGAACTCTCTGGTATGTATGATATAACTTGCCTGGAGAGTTTGCCTGAAGTACT 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4831 GACACCAGAACTCTCTGGTATGTATGATATAACTTGCCTGGAGAGTTTGCCTGAAGTACT 4890 Query: 325 CAAATACGGACCTACTACCAAGAAGGCTCGTTCAGAACCTCTTTCTTTATATGCATGTTT 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4891 CAAATACGGACCTACTACCAAGAAGGCTCGTTCAGAACCTCTTTCTTTATATGCATGTTT 4950 Query: 265 GGAAGCGTTTCTACGCGAAGAGCCTTTGGTACCTGACGAAATGTGGTAAGCAGTCTTCGT 206 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 4951 GGAAGCGTTTCTACGCGAAGAGCCTTTGGTACCTGACGAAATGTGGTAAGCAGTCTT--T 5008 Query: 205 TCAGGATATATTGTGGTGTAA-ACAAATT 178 || ||| | | ||| | || ||| Sbjct: 5009 TCTCCTTATCCT-TCCTGTGAGACTCATT 5036
Border_2 (66202_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACMTTACACTAGCATCTGAATTTCATAACCAATCT:CGATA
CACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATA
TCCTGAATATTTGAGATTTGAGAGCGATATCATTATAGGGTGCATAAGAAGATATCATCATATCGTACACTGAATAATTAAATATATTATTTCATAGTCA
GATTTTTTTCGAGTAATGTACTTTAGTGTTTAAAGTAATAGTAATAGAGACGTGTATGCATCGATGATCAATCTTGCAACCCTAAAATGATTAGTTTAAG
AGGAAAAAAGCCTAAGAATACATGTACTCTAGTACTTGATATCTAAACTTTAAACGAATTGATAAAATACTGTACGGCTTTTATTTAAACCTCAAATTTG
ACTATTCATTATTCAAATAATATTACACAAATACATACGAACGTAATACCTAACCTAATGAAAAATATTTACATATACCCCAAAAATTTAGAAATGATAG
TCAAGAAATACAAGAACTCTAGAAAAATACATACATTTTCTATTTATTTGTTCATTTACATTCTTAATTCATTTTTTATGGTTTGGGGTAAAAGTTGAAC
TACGCATTACTACAAGATGATGAATGAT:GTTCAGAAATTGCTAGTGTCTACTACGGA:TGGAAGTTGACCACACTGTATTTTTGCAGTAGATTTTAGCC
AAKATCTTCTACTTAGCTGACTAAATCAATCAATGGTATCATTTYTYTT
| Start of BLAST Alignment: | NT 4765 / Intron 11 of 13 |
| First 15 bp Perfect Match: | NT 4791 / Intron 11 of 13 |
BLAST Details: Query Sequence: 66202_LB1 Length: (846 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g40930 68415.t04645 ubiquitin-specific protease 5, put... 864 2.9e-33 1 At2g18130 68415.t02000 purple acid phosphatase (PAP11) id... 307 1.5e-05 1 At3g42316 68416.t04035 CACTA-like transposase family (En/... 282 0.00018 1 At3g22555 68416.t02556 pseudogene, putative DNA methyltra... 254 0.0034 1 >At2g40930 68415.t04645 ubiquitin-specific protease 5, putative (UBP5) similar to GI:6648604 Length = 6106 Plus Strand HSPs: Score = 864 (135.7 bits), Expect = 2.9e-33, P = 2.9e-33 Identities = 187/204 (91%), Positives = 190/204 (93%), Strand = Plus / Plus Query: 646 TTTGTTCATTTACATTCT-T-A-ATTCATTTTTTATGGTTTGGGGTAAAAGTTGAACTAC 702 ||| | | | | | | || | | | ||||||||||||||||| ||||||||||||||||| Sbjct: 5007 TTTCTCCTTATCCTTCCTGTGAGACTCATTTTTTATGGTTTGTGGTAAAAGTTGAACTAC 5066 Query: 703 GCATTACTACAAGATGATGAATGATGTTCAGAAATTGCTAGTGTCTACTACGGATGGAAG 762 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5067 GCATTACTACAAGATGATGAATGATGTTCAGAAATTGCTAGTGTCTACTACGGATGGAAG 5126 Query: 763 TTGACCACACTGTATTTTTGCAGTAGATTTTAGCCAAKATCTTCTACTTAGCTGACTAAA 822 |||| ||||||||||||||||||||||||||||||| +|||||||||||||||||||||| Sbjct: 5127 TTGAACACACTGTATTTTTGCAGTAGATTTTAGCCAGTATCTTCTACTTAGCTGACTAAA 5186 Query: 823 TCAATCAATGGTATCATTTYTYTT 846 |||||||||||||||||||+|+|| Sbjct: 5187 TCAATCAATGGTATCATTTCTCTT 5210 >At2g18130 68415.t02000 purple acid phosphatase (PAP11) identical to purple acid phosphatase (PAP11) GI:20257484 from [Arabidopsis thaliana] Length = 4628 Plus Strand HSPs: Score = 307 (52.1 bits), Expect = 1.5e-05, P = 1.5e-05 Identities = 386/695 (55%), Positives = 389/695 (55%), Strand = Plus / Plus