At3g06430 SYNGENTA 66280
Genomic Sequence (from TAIR)
taaaaatacgatccggtttttaagggatttgaacggatcaaatgtgtttccggttcggttatataaaccggtattttaccatatccaaccgaaatgagta tcgacgggaattatccgtaaacagagtgacagtgaggtgtgaaggaagaagacgATGGCGTCAATGTCTCTCTCCTTTTCTTCTTCGCTATGTTCATCCA GAATCCCCGAAGGTAAGCGTAGGTTTCGTCACAGAGATGTGGGCATCGTTAGATGCGTTTTGGCTGCTTCGAAATCTTCTCCGGGAAGTGTTACGAAGAA GAGGCTTTGGAAAGACGGCGAATTCCCCGGAATCACGGAGCCGGTTAATCAGAGAAGAACTCCGATAAAGAATGTGAAGAAGAAACTTGACAGGAGAAGC AAAGCTAACGGATGGGTTAACACCGTCACTGAAACTTTGTCCGATCTCATCGCCAAAAAGCAGTGGTTACAAGCTCTCGAGgtatttcgattttctctct tctcgttcatgtttgattgaatttgaactcaattttgaatcacgagtataatttagctgaaagatgattttgattgaattgggtattttgttgatgatct tagGTTTTTGATATGTTGAGGGAACAAACATTTTATCAACCAAAGGAAGGAACTTACATGAAGCTGCTTGTTCTTCTCGGTAAATCTGGTCAACCCAATC GTGCACAGAAGCTGTTCGACGAAATGCTTGAAGAAGGACTTGAACCAACTGTTGAACTCTACACTGCTCTTCTCGCTGCTTACACTCGCAGCAATCTCAT CGACGATGCTTTTTCAATTCTTGATAAAATGAAAAGCTTTCCTCAATGCCAACCTGATGTTTTCACGTACAGCACTCTGCTCAAGGCTTGTGTGGATGCT TCTCAGTTTGACTTGGTGGATTCGTTATACAAGGAAATGGACGAGCGTTTGATAACTCCAAACACTGTGACCCAGAACATAGTTTTAAGTGGGTACGGTA GGGTCGGAAGGTTTGATCAGATGGAGAAAGTTTTGTCTGATATGTTGGTGAGTACTGCTTGCAAACCCGATGTGTGGACTATGAATATCATCCTTAGTGT G◄TTTGGAAACA►TGGGTAAGATA►GACATGATGGAGAGCTGGTACGAAAAGTTCAGGAACTTTGGGATTGAGCCAGAGACTCGGACTTTCAATATTTTG ATTGGTTCTTATGGGAAGAAGAGAATGTATGATAAGATG◄TCGTCTGTCATGGAATACATGCGAAAGCTAGAGTTTCCGTGGACAACATCAACCTACAAC AATATCATCGAGGCGTTTGCGGATGTTGGTGATGCAAAGAACATGGAGTTGACATTTGATCAGATGCGTAGCGAAGGTATGAAAGCAGACACAAAGACCT TTTGCTGTCTCATAAACGGATATGCCAATGCCGGTCTTTTCCACAAGGTGATAAGTAGTGTTCAGTTGGCTGCTAAGTTTGAGATACCCGAGAATACTGC CTTTTACAACGCGGTGATATCAGCGTGTGCTAAAGCAGATGATCTGATAGAGATGGAAAGAGTGTACATAAGAATGAAGGAGAGACAATGCGTATGCGAT TCAAGAACGTTTGAGATCATGGTCGAGGCGTATGAAAAAGAAGGTATGAATGATAAGATCTATTACTTGGAACAAGAGAGGCAAAAGCTTATGGATCGCA CTGTTGCTACAAAAGAGATGGAGAATCTTCCGGCAGGATGAttgcggtttgtgtgtgaatctctctctctctctctctgcaaggagagatcgatgtctca cttgaaagagtagaataaaagagtttgtaatacacttgattgttcttgcagctatgcgtgttatatattttgatgggcccaaaattatgaatagaggccc atagataaactgtgacgtgcacaagaaatcggacaagtccaaaaagtggataagtgcgtgtcgtctttctataaataatctcttttctctcatcttttac cgtttcttctcgaacaatcaaaaacgaactaaccaaacataaaattgaacacatcctcttcctctgctctctgcaaacaaaaaaacaccgattcggtcag gaatcattcgtcgtgaaatctgtaATGGGGATTGTTGTCAAGTCTTTCAAGGATCAATTCTCCTCTGgtttgttcttcgttaatctctttctgattcttt ggaa
Border_1 (66280_LBD)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTMCACTAGCATCTGAATTTATAACCAATCTCGATACA
CCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACACTAAGGA
TGATATTCATAGTCCACACATCGGGTTTGCAAGCAGTACTCACCAACATATCAGACAAAACTTTCTCCATCTGATCAAACCTTCCGACCCTACCGTACCC
ACTTAAAACTATGTTCTGGGTCACAGTGTTTGGAGTTATCAAACGCTCGTCCATTTCCTTGTATAACGAATCCACCAAGTCAAACTGAGAAGCATCCACA
CAAGCCTTGAGCAGAGTGCTGTACGTGAAAACATCAGGTTGGCATTGAGGAAAGCTTTTCATTTTATCAAGAATTGAAAAAGCATCGTCGATGAGATTGC
TGCGAGTGTAAGCAGCGAGAAGAGCAGTGTAGAGTTCAACAGTTGGTTCAAGTCCTTCTTCAAGCATTTCGTCGAACAGCTTCTGTGCACGATTGGGTTG
ACCAGATTTACCGAGAAGAACAAGCAGCTTCATGTAAGTTCCTTCCTTTGGTTGATAAAATGGTTGGTCCCTCAACATATCAAAACCTAAGATCATCACA
AATACCCAATTCATCAAATCATCTTTCAGCTAATATACTCGTGATTCAAATTGAGTTCAATTCATCAACATGACCGAGAAGAGAGAAATCGAATACCTT
| Start of BLAST Alignment: | NT 1082 / Exon 2 of 2 |
| First 15 bp Perfect Match: | NT 947 / Exon 2 of 2 |
BLAST Details: Query Sequence: 66280_LBD Length: (799 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g06430 68416.t00672 pentatricopeptide (PPR) repeat-con... 2801 4.4e-122 1 At5g46100 68418.t05275 pentatricopeptide (PPR) repeat-con... 353 5.0e-08 1 At1g74850 68414.t07942 pentatricopeptide (PPR) repeat-con... 332 7.7e-07 1 At3g13160 68416.t01458 pentatricopeptide (PPR) repeat-con... 324 1.3e-06 1 >At3g06430 68416.t00672 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 1891 Minus Strand HSPs: Score = 2801 (426.3 bits), Expect = 4.4e-122, P = 4.4e-122 Identities = 669/763 (87%), Positives = 669/763 (87%), Strand = Minus / Plus Query: 797 GGTATTCGATTTCTCTCTTCTCG-GTCATG-TTGATGAATTGAACTCAATTT-GAATCAC 741 | | ||| | | |||| | || || || |||| | ||||||||||||| ||||||| Sbjct: 394 GATTTTCTCTCT-TCTCGT-TCATGTT-TGATTGA--ATTTGAACTCAATTTTGAATCAC 448 Query: 740 GAGTATA-TT-AGCTGAAAGATGATTT-GAT-GAATTGGGTATTT-GT-GATGATCTTAG 687 ||||||| || |||||||||||||||| ||| ||||||||||||| || ||||||||||| Sbjct: 449 GAGTATAATTTAGCTGAAAGATGATTTTGATTGAATTGGGTATTTTGTTGATGATCTTAG 508 Query: 686 GTTTT-GATATGTTGAGGGACCAACCATTTTATCAACCAAAGGAAGGAACTTACATGAAG 628 ||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct: 509 GTTTTTGATATGTTGAGGGAACAAACATTTTATCAACCAAAGGAAGGAACTTACATGAAG 568 Query: 627 CTGCTTGTTCTTCTCGGTAAATCTGGTCAACCCAATCGTGCACAGAAGCTGTTCGACGAA 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 569 CTGCTTGTTCTTCTCGGTAAATCTGGTCAACCCAATCGTGCACAGAAGCTGTTCGACGAA 628 Query: 567 ATGCTTGAAGAAGGACTTGAACCAACTGTTGAACTCTACACTGCTCTTCTCGCTGCTTAC 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 629 ATGCTTGAAGAAGGACTTGAACCAACTGTTGAACTCTACACTGCTCTTCTCGCTGCTTAC 688 Query: 507 ACTCGCAGCAATCTCATCGACGATGCTTTTTCAATTCTTGATAAAATGAAAAGCTTTCCT 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 689 ACTCGCAGCAATCTCATCGACGATGCTTTTTCAATTCTTGATAAAATGAAAAGCTTTCCT 748 Query: 447 CAATGCCAACCTGATGTTTTCACGTACAGCACTCTGCTCAAGGCTTGTGTGGATGCTTCT 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 749 CAATGCCAACCTGATGTTTTCACGTACAGCACTCTGCTCAAGGCTTGTGTGGATGCTTCT 808 Query: 387 CAGTTTGACTTGGTGGATTCGTTATACAAGGAAATGGACGAGCGTTTGATAACTCCAAAC 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 809 CAGTTTGACTTGGTGGATTCGTTATACAAGGAAATGGACGAGCGTTTGATAACTCCAAAC 868 Query: 327 ACTGTGACCCAGAACATAGTTTTAAGTGGGTACGGTAGGGTCGGAAGGTTTGATCAGATG 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 869 ACTGTGACCCAGAACATAGTTTTAAGTGGGTACGGTAGGGTCGGAAGGTTTGATCAGATG 928 Query: 267 GAGAAAGTTTTGTCTGATATGTTGGTGAGTACTGCTTGCAAACCCGATGTGTGGACTATG 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 929 GAGAAAGTTTTGTCTGATATGTTGGTGAGTACTGCTTGCAAACCCGATGTGTGGACTATG 988 Query: 207 AATATCATCCTTAGTGTGGT-GTAAACAAATTGACGCTTAGACAACTTA-ATAACACATT 150 |||||||||||||||||| | | ||||| | | | ||||| | | | | | Sbjct: 989 AATATCATCCTTAGTGTGTTTGGAAACATGGGTAAGAT-AGACATGATGGAGAGCTGGTA 1047 Query: 149 GCGGAC-GTTTTTAATGTACTGAATTAACGCCGAATTGAATTCGATTTGGTGTATCGAGA 91 || | ||| | | | ||| | ||| | || | || || ||| || Sbjct: 1048 -CGAAAAGTTCAGGAACTTTGGGATTGA-GCCAGA--GACTCGGACTTTCAATATTTTGA 1103 Query: 90 TTGGTTATAAATTCAGATGCTAGTGKAATGTATTGGTAATTTG 48 |||||| | | | || | || | ||||||| | ||| || Sbjct: 1104 TTGGTTCTTA--TGGGAAGA-AGAG-AATGTAT-GATAAGATG 1141 >At5g46100 68418.t05275 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 1419 Minus Strand HSPs: Score = 353 (59.0 bits), Expect = 5.0e-08, P = 5.0e-08 Identities = 367/661 (55%), Positives = 367/661 (55%), Strand = Minus / Plus
Border_2 (66280_AbBU)
TGCANCGGGGCCAGGCAATCATTCGNTGGGAAANNACANNAGGAAGGCANNATGCCGCNNTATTTTGGGAGAGATNGACATGATGGAGAGCTGGTACGAA
AAGNTCAGGAACTTTGGGATTGAGCCAGAGACTCGGACTTTCAATATTTTGATTGGTTCTTATGGGAAGAAGAGAATGTATGATAAGATGTCGTCTGTCA
TGGAATACATGCGAAAGCTAGAGTTTCCGTGGACAACATCAACCTACAACAATATCATCGAGGCGTTTGCGGATGTTGGTGATGCAAAGAACATGGAGTT
GACATTTGATCAGATGCGTAGCGAAGGTATGAAAGCAGACACAAAGACCCTTTTGCTGTCTCATAAACGGATATGCCAATGCCGGTCTTTTCCACAAGGT
GATAAGTAGTGTTCAGTTGGCTGCTAAGTTTGAGATACCCGAGAATACTGCCTTTTACAACGCGGTGATATCAGCGTGTGCTAAAGCAGATGATCTGATA
GAGATGGAAAGAGTGTACATAAGAATGAAGGAGAGACAATGCGTATGCGATTCAAGAACGTTTGAGATCATGGTCGAGGCGTATGAAAAAGAAGGTATGA
ATGATAAGATCTATTACTTGGAACAAGAGAGGCAAAAGCTTATGGATCGCACTGTTGCTACAAAAGAGATGGAGAATCTTCCGGCAGGATGATTGCGGTT
TGTGTGTGAATCTCTCTCTCTCTCTCTCTGCAAGGAGAGATCGATGTCTCACTTGAAAGAGTAGAATAAAAGAGTTTGTAATACACTTGATTGTTCTTGC
AGCTATGCGTGTTATATATTTTGATGGGCCCAAAATTATGAATAGAGGCCCATAGATAAACTGTGACGTGCACAAGAAATCGGACAAGTCCAAAAAGTGG
ATAAGTGCGTGTCGTCTTTCTATAAATAATCTCTTTTCTCTCATCTTTTACCGTTTCTTCTCGAACAATCAAAAACGAACTAACCAAACATAAAATTGAA
CACATCCTCTTCCTCTGCTCTCTGCAAACAAAAAAAGCACCGATTC
| Start of BLAST Alignment: | NT 957 / Exon 2 of 2 |
| First 15 bp Perfect Match: | NT 968 / Exon 2 of 2 |
BLAST Details: Query Sequence: 66280_AbBU Length: (1046 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g06430 68416.t00672 pentatricopeptide (PPR) repeat-con... 4200 2.9e-185 1 At3g53170 68416.t05446 pentatricopeptide (PPR) repeat-con... 556 5.3e-18 1 At5g48730 68418.t05600 pentatricopeptide (PPR) repeat-con... 504 5.6e-15 1 At3g06420 68416.t00671 autophagy 8h (APG8h) identical to ... 435 1.1e-11 1 >At3g06430 68416.t00672 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 1891 Plus Strand HSPs: Score = 4200 (636.2 bits), Expect = 2.9e-185, P = 2.9e-185 Identities = 852/876 (97%), Positives = 852/876 (97%), Strand = Plus / Plus Query: 66 TGGGAGAGATNGACATGATGGAGAGCTGGTACGAAAAGNTCAGGAACTTTGGGATTGAGC 125 |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1017 TGGGTAAGATAGACATGATGGAGAGCTGGTACGAAAAGTTCAGGAACTTTGGGATTGAGC 1076 Query: 126 CAGAGACTCGGACTTTCAATATTTTGATTGGTTCTTATGGGAAGAAGAGAATGTATGATA 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1077 CAGAGACTCGGACTTTCAATATTTTGATTGGTTCTTATGGGAAGAAGAGAATGTATGATA 1136 Query: 186 AGATGTCGTCTGTCATGGAATACATGCGAAAGCTAGAGTTTCCGTGGACAACATCAACCT 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1137 AGATGTCGTCTGTCATGGAATACATGCGAAAGCTAGAGTTTCCGTGGACAACATCAACCT 1196 Query: 246 ACAACAATATCATCGAGGCGTTTGCGGATGTTGGTGATGCAAAGAACATGGAGTTGACAT 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1197 ACAACAATATCATCGAGGCGTTTGCGGATGTTGGTGATGCAAAGAACATGGAGTTGACAT 1256 Query: 306 TTGATCAGATGCGTAGCGAAGGTATGAAAGCAGACACAAAGACCCTTTTGCTGTCTCATA 365 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1257 TTGATCAGATGCGTAGCGAAGGTATGAAAGCAGACACAAAGACC-TTTTGCTGTCTCATA 1315 Query: 366 AACGGATATGCCAATGCCGGTCTTTTCCACAAGGTGATAAGTAGTGTTCAGTTGGCTGCT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1316 AACGGATATGCCAATGCCGGTCTTTTCCACAAGGTGATAAGTAGTGTTCAGTTGGCTGCT 1375 Query: 426 AAGTTTGAGATACCCGAGAATACTGCCTTTTACAACGCGGTGATATCAGCGTGTGCTAAA 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1376 AAGTTTGAGATACCCGAGAATACTGCCTTTTACAACGCGGTGATATCAGCGTGTGCTAAA 1435 Query: 486 GCAGATGATCTGATAGAGATGGAAAGAGTGTACATAAGAATGAAGGAGAGACAATGCGTA 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1436 GCAGATGATCTGATAGAGATGGAAAGAGTGTACATAAGAATGAAGGAGAGACAATGCGTA 1495 Query: 546 TGCGATTCAAGAACGTTTGAGATCATGGTCGAGGCGTATGAAAAAGAAGGTATGAATGAT 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1496 TGCGATTCAAGAACGTTTGAGATCATGGTCGAGGCGTATGAAAAAGAAGGTATGAATGAT 1555 Query: 606 AAGATCTATTACTTGGAACAAGAGAGGCAAAAGCTTATGGATCGCACTGTTGCTACAAAA 665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1556 AAGATCTATTACTTGGAACAAGAGAGGCAAAAGCTTATGGATCGCACTGTTGCTACAAAA 1615 Query: 666 GAGATGGAGAATCTTCCGGCAGGATGATTGCGGTTTGTGTGTGAANNNNNNNNNNNNNNN 725 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1616 GAGATGGAGAATCTTCCGGCAGGATGATTGCGGTTTGTGTGTGAATCTCTCTCTCTCTCT 1675 Query: 726 NNNNGCAAGGAGAGATCGATGTCTCACTTGAAAGAGTAGAATAAAAGAGTTTGTAATACA 785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1676 CTCTGCAAGGAGAGATCGATGTCTCACTTGAAAGAGTAGAATAAAAGAGTTTGTAATACA 1735 Query: 786 CTTGATTGTTCTTGCAGCTATGCGTGTTATATATTTTGATGGGCCCAAAATTATGAATAG 845 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1736 CTTGATTGTTCTTGCAGCTATGCGTGTTATATATTTTGATGGGCCCAAAATTATGAATAG 1795 Query: 846 AGGCCCATAGATAAACTGTGACGTGCACAAGAAATCGGACAAGTCCAAAAAGTGGATAAG 905 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1796 AGGCCCATAGATAAACTGTGACGTGCACAAGAAATCGGACAAGTCCAAAAAGTGGATAAG 1855 Query: 906 TGCGTGTCGTCTTTCTATAAATAATCTCTTTTCTCT 941 |||||||||||||||||||||||||||||||||||| Sbjct: 1856 TGCGTGTCGTCTTTCTATAAATAATCTCTTTTCTCT 1891 >At3g53170 68416.t05446 pentatricopeptide (PPR) repeat-containing protein low similarity to fertility restorer [Petunia x hybrida] GI:22128587; contains Pfam profile PF01535: PPR repeat Length = 1430 Plus Strand HSPs: Score = 556 (89.5 bits), Expect = 5.3e-18, P = 5.3e-18 Identities = 348/580 (60%), Positives = 348/580 (60%), Strand = Plus / Plus