At5g55940 SYNGENTA 66573
Genomic Sequence (from TAIR)
aaacttgtggggaatagggttttcggtgataaaatcgggctgacccgaacccggtttagtgcgagattccactgtccgtcgttaacaaaggagctaaatc tcagaacgatttctcgatttgcttttgcgacattataattttcctttcaattgactcagtgagtcgccgatcgagttagaaATGGGAATGGGAAGTAACG GAGAATTGAAGTATGAGATCTCCCAGAACGCGTACATCAAACTCGTTCTTCACTCGCTGCGACACAAGACGGCGGCGGTCAACGGAGTCCTCGTCGGTAG AATCAGCCCTAAGGACGACGGAGTTGTAGAGATCTCAGATTCTGTGCCGCTCTTTCACTCTAAC◄CTCGCTCTCCTTCCTCCTCTCGAGATCTCCCTCAT CATGgtt►cgtatctcttc►ttattcgaatcgatttgattttacgagctttgaaattgaattttgaaagagattatgatctgattgcattggtatgtata ttgaattacgaattctggaaatttttagttcgtgtactaagcttgagctgcatatgttattattagcttgttcttagttttctatatgtttgcttgattc tcagtgaagtcttattgttgtttctatattaacatagaaatttcagatctttatgtgtttgttctgtagctttgtttgtacctatatcctttaaagaaaa acttacggattcaggtatattttttgttgtggtagATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACTTTCATGCAAACGAGAGGTT TGATGACGTTGAGCTCTGTGGTGTGGCTAAAAACATTGGTGATCACATTTCTCGCTATTTCCCTCAGGCACCAATTCTCTTGgtaattaaatgtcttatc ctttactttcaaatgcagcattttcgtttaactatcttatgttttgtccctttatgctgtttgtagTTGAACAACAAAAAGCTTGAAGCCTTATCAAAGG GTAAAGAGCGAAGCCCTGTGATGCAGgttggtatttctaatcatgaaaatgctttgaaaagcttaggagaatatgaatatgagattgagaagttagtcaa tttagtatttaatatatatcaaggccactctacaccagtatagcttcttggtatttgaaaatatggttttggtatattgttatgctcaatataagatcaa gagaaaatagtgaaagactgagacactcaaattttgttgtatatgctaatttatggttactccaggctcttgtctcaactttgcatcctaagcaaatact gtaaatttataagatatacatgactatactagctaattaaagttcacactgtttgcttgaattgtgctaccaaccttcttgacaccaagcttatatggtc tatgtaataaaccctttctcgcccttttcttttggtactttctgcttgatgcagtttctctgcagctgttaaactcctatttgtcactttttacggattt agtgatagtgtatgttgtatgtatatgctagCTCTGTGTGAAGGATGCTTCTAAGAACTGGAGAGTAGTTGGAGCAGATGGAGGAAGCAAGCTACTCTTA AAAGAGCCATCGGCCAATGTAGTTTTGTCAGATTACATTTCATCTGAGAAATGGAAGGACGTCACAGATGTTGATGATCATCTTGATGATGTAACAAAgt aagttaaatacacgaactgaaacaaaaaaaaagaagctagaacctttatgtaccagatggtaatatctcactcatattcactgtaattgcagGGACTGGC TAAACCCTGGACTTTTCAACTGAagatgggtatgcgacatagctaaactagacttttgctttcatcatcttctgtcgaaaaacaaaaaagttctcggaga ccattgtttaaaatttcccttgaatcttgttaaagtattatccagctatgcaacagagctcaaattacttttaattggtacacatcttaaaccttagtta tatcatttgaatgatatcttttggagcttgttacattttgattatatagttggaatgaagaaagctctactttatttggctactgttcttatacttacaa agggaatagttaaatactgaagaacatgaaaccaaatctagtgctttacattgtttgagtcccttaacttggagggttttacacagatataaggttaccg aagccatcaacagttacccctttcaggacaacgttgcatctacttcaattcttaaaacacgggacaaccttcaacaacaacacctttggctagagggcaa tgcg
Border_1 (66573_RBU)
CAAACTAGGATAAATTATCGCGCGCGGTGTCATCTATGTTACTAGATCGGGAATKSRGCTC:GSGGCCGCCATGGCATATGCTAGCATGCATAATTCCTG
CAGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATCAGTTTGTCGTTAGAGTGAAAGAGCGGCACAGAATCTGAGATCT
CTACAACTCCGTCGTCCTTAGGGCTGATTCTACCGACGAGGACTCCGTTGACCGCCGCCGTCTTGTGTCGCAGCGAGTGAAGAACGAGTTTGATGTACGC
GTTCTGGGAGATCTCATACTTCAATTCTCCGTTACTTCCCATTCCCATTTCTAACTCGATCGGCGACTCACTGAGTCAATTGAAAGGAAAATTATAATGT
CGCAAAAGCAAATCGAGAAATCGTTCTGAGATTTAGCTCCTTTGTTAACGACGGACAGTGGAATCTCGCACTAAACCGGGTTCGGGTCAGCCCGATTTTA
TCACCGAAAACCCTATTCCCCACAAGTTTTCACTTTACTACATTAAAGTTTTTGAAATTATAGAAAAAGTCAAAAAGGTTTATTATATTTACTAATTGCA
CCTCATAATACACATCAAGTGACGAC
| Start of BLAST Alignment: | NT 183 / Exon 1 of 5 |
| First 15 bp Perfect Match: | NT 183 / Exon 1 of 5 |
BLAST Details: Query Sequence: 66573_RBU Length: (625 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g55940 68418.t06477 expressed protein contains Pfam PF... 1685 8.1e-72 1 At5g55950 68418.t06478 transporter-related low similarity... 290 3.1e-05 1 >At5g55940 68418.t06477 expressed protein contains Pfam PF03665: Uncharacterised protein family (UPF0172) Length = 2617 Minus Strand HSPs: Score = 1685 (258.9 bits), Expect = 8.1e-72, P = 8.1e-72 Identities = 337/337 (100%), Positives = 337/337 (100%), Strand = Minus / Plus Query: 501 GATAAAATCGGGCTGACCCGAACCCGGTTTAGTGCGAGATTCCACTGTCCGTCGTTAACA 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 GATAAAATCGGGCTGACCCGAACCCGGTTTAGTGCGAGATTCCACTGTCCGTCGTTAACA 60 Query: 441 AAGGAGCTAAATCTCAGAACGATTTCTCGATTTGCTTTTGCGACATTATAATTTTCCTTT 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 AAGGAGCTAAATCTCAGAACGATTTCTCGATTTGCTTTTGCGACATTATAATTTTCCTTT 120 Query: 381 CAATTGACTCAGTGAGTCGCCGATCGAGTTAGAAATGGGAATGGGAAGTAACGGAGAATT 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 CAATTGACTCAGTGAGTCGCCGATCGAGTTAGAAATGGGAATGGGAAGTAACGGAGAATT 180 Query: 321 GAAGTATGAGATCTCCCAGAACGCGTACATCAAACTCGTTCTTCACTCGCTGCGACACAA 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 GAAGTATGAGATCTCCCAGAACGCGTACATCAAACTCGTTCTTCACTCGCTGCGACACAA 240 Query: 261 GACGGCGGCGGTCAACGGAGTCCTCGTCGGTAGAATCAGCCCTAAGGACGACGGAGTTGT 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 GACGGCGGCGGTCAACGGAGTCCTCGTCGGTAGAATCAGCCCTAAGGACGACGGAGTTGT 300 Query: 201 AGAGATCTCAGATTCTGTGCCGCTCTTTCACTCTAAC 165 ||||||||||||||||||||||||||||||||||||| Sbjct: 301 AGAGATCTCAGATTCTGTGCCGCTCTTTCACTCTAAC 337
Border_2 (66573_LBD)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACMTTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGC::GTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATGTGTTTATTCGAATCGAT
TTGATTTTACGAGCTTTGAAATTGAATTTTGAAAGAGATTATGATCTGATTGCATTGGTATGTATATTGAATTACGAATTCTGGAAATTTTTAGTTCGTG
TACTAAGCTTGAGCTGCATATGTTATTATTAGCTTGTTCTTAGTTTTCTATATGTTTGCTTGATTCTCAGTGAAGTCTTATTGTTGTTTCTATATTAACA
TAGAAATTTCAGATCTTTATGTGTTTGTTCTGTAGCTTTGTTTGTACCTATATCCTTTAAAGAAAAACTTACGGATTCAGGTATATTTTTTGTTGTGGTA
GATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTATTGTTGGATACT
| Start of BLAST Alignment: | NT 225 / Intron 1 of 4 |
| First 15 bp Perfect Match: | NT 236 / Intron 1 of 4 |
BLAST Details: Query Sequence: 66573_LBD Length: (545 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g55940 68418.t06477 expressed protein contains Pfam PF... 1806 2.8e-77 1 At5g51620 68418.t05944 expressed protein 1725 2.9e-73 1 At3g46830 68416.t04726 Ras-related protein (RAB11A) / sma... 249 0.0021 1 At4g11910 68417.t01799 expressed protein hypothetical pro... 233 0.015 1 >At5g55940 68418.t06477 expressed protein contains Pfam PF03665: Uncharacterised protein family (UPF0172) Length = 2617 Plus Strand HSPs: Score = 1806 (277.0 bits), Expect = 2.8e-77, P = 2.8e-77 Identities = 366/372 (98%), Positives = 366/372 (98%), Strand = Plus / Plus Query: 174 CGTCAATGTGTTTATTCGAATCGATTTGATTTTACGAGCTTTGAAATTGAATTTTGAAAG 233 ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 380 CGTATCTCTTCTTATTCGAATCGATTTGATTTTACGAGCTTTGAAATTGAATTTTGAAAG 439 Query: 234 AGATTATGATCTGATTGCATTGGTATGTATATTGAATTACGAATTCTGGAAATTTTTAGT 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 440 AGATTATGATCTGATTGCATTGGTATGTATATTGAATTACGAATTCTGGAAATTTTTAGT 499 Query: 294 TCGTGTACTAAGCTTGAGCTGCATATGTTATTATTAGCTTGTTCTTAGTTTTCTATATGT 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500 TCGTGTACTAAGCTTGAGCTGCATATGTTATTATTAGCTTGTTCTTAGTTTTCTATATGT 559 Query: 354 TTGCTTGATTCTCAGTGAAGTCTTATTGTTGTTTCTATATTAACATAGAAATTTCAGATC 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 560 TTGCTTGATTCTCAGTGAAGTCTTATTGTTGTTTCTATATTAACATAGAAATTTCAGATC 619 Query: 414 TTTATGTGTTTGTTCTGTAGCTTTGTTTGTACCTATATCCTTTAAAGAAAAACTTACGGA 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 620 TTTATGTGTTTGTTCTGTAGCTTTGTTTGTACCTATATCCTTTAAAGAAAAACTTACGGA 679 Query: 474 TTCAGGTATATTTTTTGTTGTGGTAGATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTA 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 680 TTCAGGTATATTTTTTGTTGTGGTAGATAGAGGAGCATTATGTGGCTCAAGGTTTAAGTA 739 Query: 534 TTGTTGGATACT 545 |||||||||||| Sbjct: 740 TTGTTGGATACT 751 >At5g51620 68418.t05944 expressed protein Length = 1155 Plus Strand HSPs: Score = 1725 (264.9 bits), Expect = 2.9e-73, P = 2.9e-73 Identities = 357/372 (95%), Positives = 357/372 (95%), Strand = Plus / Plus