At5g16715 SYNGENTA 67816
Genomic Sequence (from TAIR)
CTGGTTGGAGACCAAAGGTTATGGGTTAAgagattttgatgttgacctcaagcttccttgtcttctactaaatgtaaaaaacataataatcaaatcttct tcaactgttaccaatgatatataccttgaatccttgattgcttatatgatgaaaactatattgtgtcatagtggggaagcttgcatataagttttaatgt accgaccaatcactactaaaattttgaaccatctgcaaattatttaccgtaagctacagagcaattagacgaccattgaaagaacaataattacggaata cccttcccgtcatccattccttccctcctccgccttaaacccctaccattttgtgtcactagcagcttatctttattttcctgggaatttcaaattcttt tctcgccccagattttctcgggaatctctgtcgggcgttttcttcagaatctgccATGATTCTCAAAACGGCTTTTTCTCTACCCACACCTACTACTACT CTATTATCTCCCAGCTCTCCTCACCAGCTCAACACTCTGTTCTTCACTCGCCGACGCCGTCGATTAATTTCCCCATCCCGCTTGAACTCAATTTTCTCGC AACGTAGATTCTCTTTCTCTGgtacgttcctcgctatttcttttctccagtgtcgaattctgtttccaatcgattttgttggaacttctcttctgttaca gtaaaaatttattcgaattcctcttttgtattcagCTGCTGCGTCAGGAAATAATGTATTTACTTCTCCCGAGACATCCAAGACCTTTGATTTTTCTTCG GAGGAGAAGATATACAAATGgtaaatattctactcgtgagttaatggaattattatgagttaagatatatcacaatgcaaataaaaagtgtctcattctt cccaatgtaacctatgggaacatggatttcttgtgataatgctgatgatcatttggatttgggcatttttagGTGGGAGTCGCAAGGCTACTTCAAACCA AATTTTGACCAAGGAGGCAGTCCTTTTGTGATACCGATGCCACCTCCTAATGTTACTGGTTCTCTGCACATGGGCCATGCAATGTTTGTCACTCTTGAGg ttgtggaatccatattgagaataattcacagtcatttgggtattctaatttatgttcctattttcgtttaacctttttagtttgttcgtctagctttagc tcgtatatactaggcgctttccacacttcttaagttggcttgaaatattgtttagtaattccatgttttctttgtgctgtaactgtgttatactatagtt ctgctattctcatcgcttttttgttttttacagGATATTATGGTTCGATACAATAGGATGAATGGGAGACCAACACTTTGGCTTCCCGGGACTGATCA◄T GCTGGTATTGCCACTCAGgttcatttcctcgttcaaatttcaagctttttt►gcatggtatttctactagtgtttgcgtg►tttgttttgtgctcactat gattcttacatcttcttcttcacaatccattgctcttgttcctataccaatctaccacatttactttgtcaaaaagttcttttcttgtagagtataattt gtatagataatatttgcattgtttggtgaatgtttctgaaatattctactgaagctgcaatatttctttcagTT◄GGTCGTGGAAAAGATGCTAGCGTCA GAAGGCATTAAGAGAGTGGACTTAGGTAGAGATGAGTTTACCAAAAGAGTCTGGGAATGGAAGGAAAAgtatgctgtctaatcactgcaatgaataaatt caaaatatctatttcaaaagtatctgtatgatactctggcggtgtttccattcttcgaacgagtcataagttattgatcttctggaaaactatgaagtat tttaagcaggagatgattcctgtacatttcttataattgagtaatctgatgttcctgaaccattccaaaggccaatgctttcattaaaagataaaatcca ctgtacttgtatctgatgtgttaagggtaaggctggaattatagtttgtgtggtttttctcagGTATGGCGGAACCATCACAAATCAGATTAAAAGACTG GGTGCTTCTTGTGATTGGAGTAGAGAGCGCTTTACTCTTGACGAGCAATTGAGTCgtaaggcatctttcatagtttccatatcttctagatggtgattct taaagcagaccataggtggtgctcaaagttgactttatatgattttgagtggtattttggaattcaaaaacttcggcaagtaaaatattattcagttgtt aggtggttcaaaaagtttctcgttgctcttaatttcaaattgtatgtactttcaccttgaatttattccttgattctcttttaccttgaatttgtagGAG CTGTGGTCGAAGCTTTTGTGAAGCTTCATGACAAGGGGTTGATATATCAAGgtaagctattatgaatttatgtattttggtttctgttgtcgtagctgta agtagagctgtgctgtactcatacgactattggtgattttggcataatgtttttccagGATCTTACATGGTCAACTGGTCCCCAAATTTACAGACTGCTG TTTCAGACTTGgtgtgtgatgtatttttatctaacactctgttgtttgattactttttttttctttctaaaagtgactgccttgttcttaccagGAAGTA GAATATTCGGAGGAACCTGGGTTTCTATACCATATTAAATACCGTGTAGCTGGAAGgtactgtccaactaccagtactaccttcgcctttccttatactt tgtattttatggacccttatatgtagcaaaattatgtgaaaagataattttttctcacatcaatttgattatgctctgctattagagagttcaaagaagc attatagtgtttgaaaaacgtatcttatggaggctttagattatgtcgtatgatcattaaaacttgtgaaacacagcgttgggtctgtaagagttgcttc ggcagtagttaaccttaaattttgctagcaaattattcttggaagatcagtgactacttttgttctgtttatggaaatggctaatctgatctttcctcgt acagTCCTGATTTTCTTACTATAGCAACGACTCGTCCAGAGACATTGTTTGGTGACGTGGCCCTTGCCGTGCATCCTGAGgtaggtggtgatattttttt ggtttcgttgataataggacatcgggaatgacagatggcattatcaaagtctgtttgacgtgtttataatttttgaatacacacagagctcagttaacaa acttagaagcaagtttttttttttgataaaaacttagaagcaaatttaatattagggaggaaaagtatataatgtgtaacacattttattttcttcttcc ttttgtggttttcatttatatttctattatgtaaaatttaaatgaaattgaaaatgtagtccaggtagtttgtcaggttgctggtccaatttaatgtaag cagatgtaatctacaaagtagatgctgatttttttggatctcatgtgaatgtagatcgtcttctagtcgtttcctggaataggtgctcttttttgggtat cgtttgaggattaatgttgtgaaatgtatttggcatctggcagGATGATCGTTACTCAAAATATGTTGGTCAGACAGCAATTGTACCTATGACATATGGT CGTCATGTCCCAATTATTGCTGATAAGgtgaactccgatctactgcctatgcactctttatgatgtcttttaggatcaaatatctttttcaagtccaaca aggaaaacgctgcagttgtttttctttgccatttttcgtgctttaagtatcagtattttgctgggaaacttctaagttctagttactcagaaccaagaaa ctgagtacctcatagtatttcctctgctgctcttcaggcatttctcatcagtttttttgtgtaccatggcagTATGTTGATAAGGATTTTGGGACTGGTG TTCTGAAGATAAGTCCTGGGCATGATCACAACGATTACCTTCTTGCAAGAAAGCTAGGTCTCCCCATTCTGAATGTGATGAACAAGGATGCAACACTTAA TGACGTCGCTGGCTTGTTTTGgtaacattttgtttaaaacttatattttagctgaatggaataccctttggttacatcttaacgtccatggcgccttaac atacatcgtattttcagtggccttgacagGTTTGAGGTGAGGGAGAAACTATGGGCAGATCTTGAGGAGATAGGTTTAGCTGTTAAGAAGGAGCCTCACA CTTTACGAGTTCCAAGATCTCAGCGTGGTGGAGAAgtatctttctactgacccagcattaatttttcagttcgtttgaagttcataattttctcatgcat ggtttaactggtgttagGTTATTGAGCCACTTGTAAGCAAACAATGGTTTGTCCACATGGATCCTTTAGCTGAGAAGGCTCTTCTTGCTGTTGAAAACAA AGAACTTACTATCATACCTGAGAGATTTGAGAAGgtatgcaagcgactggttggtgttattagttactgagctggtatctgtctttttctcctcagtttg gcaaattctctgaaaggttttgatttttgattgtttacactgcatacttctgcttttgcttttatttcctgtcaccacttgcagATATACAATCACTGGC TGACAAATATTAAGGATTGGTGCATAAGCCGGCAGCTGTGGTGGGGACATCGCATACCAGTTTGGTATGTGGTTGGAAAGGATTGCGAGGAGGACTACAT AGTTGCTAAAAGTGCTGAAGAAGCCCTTGAGAAAGCCCTTGAGAAGTATGGAAAAGATGTTGAAATATATCAGGATCCAGATGTTCTTGACACCTGGTTT TCCAGgttagtttttcatttatttggagattacttttcttctgtgtgtctttgttttagaaatagtcactagtttaatcatgtgaaagtatcagtttcct cggaatagtcaccatgaattagtgcgtttcctcatatatgacgctgaacatagttttcctcattttgcattaacttcctatattatttatttagatgttt tttttctgcagCTCGTTGTGGCCATTCAGCACTCTTGGCTGGCCTGATGTAGCAGCGAAGGATTTCAATAACTTCTACCCAACAAATATGTTAGAAACAG Ggtacattcctttctttttgtcgatcaggaaaacaatggctgctactatcagggctattgttgtaaacccttcactaggaagaaaaaaatttaggaccaa caacaatttttctgttgccaagaaggcaagaactaatgtctaaattaagtaaaatctgaaaagaaaatgcgctttagttgcagcttgcggttttgaaatt ctcatcacttcctttaaataacctttctcatttatttggacagGCATGACATACTATTTTTTTGGGTAGCAAGAATGGTTATGATGGGAATAGAATTTAC AGGGACCGTTCCATTTTCTCATGTCTACCTTCATGGACTTATAAGAGACTCACAAgtaagtgttaggctttttgcttgttctagtaaatgtttttttttc ttttcttttcaagacgaggtagccactcaaaccttgatcattgaggcttttcatatcattatttctcacttttcccgatatgctattaaacgttaggtaa cttctaggatttctatttaaggattctcgttctgtatatctccaagtagttaatcagattatttggaattatcagGGGAGAAAAATGTCAAAATCTCTTG GGAATGTGATTGATCCGCTTGACACAATTAAAGATTTTGGCACTGATGCTCTGAGATTTACGATTGCACTAGGAACTGCTGGTCAGgtttgatctctact gtgttgaggcagctgaaccatgcttttttgggtaggtttatattaaaatgtcatatttatgtctatattccttgttttccccattacctttttgttagGA TCTGAACTTATCTACTGAGAGGTTAACTGCAAATAAAGCATTCACCAACAAACTCTGGAATGCTGGAAAGTTTGTGCTTCATAGTCTGCCTAGTCTAAGT GATACATCTGCTTGGGAGAATTTGCTGGACCTCAAGgtttgcttgtttttccatctccactagaaagtattagggaattgtggtatatttgtcctttcag tgacagactaagtatggtataaagtcgaaagtcattgataatatgtttagactatctttgtgtttgggatcatgaaccataaaagtctcacaaaaaaacg aggtagctttaaatataggagattggtcagacctctttccaggagtatctccacctgcataccttttgccattacttaaaacagctgcagagtcgcatca caagtgataagctaccttaggctgctctcttactatcgatttgttgtgacactttacaataaggattttttctaacattttgcttccttttttttttgac agTTGGACAAAGAGGAAACCCTGCTTAGTTTACCCTTGCCTGAGTGTTGGGCGgtataatatttttaccctgaagttatccaacagttcaatctgcctac caccttatattccttttgtattatttcagGTGTCAAAACTCCATATTCTCATTGATTCTGTCACAGCAAGCTATGAGAAGTTGTTCTTTGGGGATGTAGG AAGAGAAACATATGATTTCTTTTGGAGTGACTTTGCTGATTGgtatcaccacgtcaactcttaataaccaatacacatgtttcttggacttaattgactg actagtatactctaaagGTATATTGAAGCCAGCAAATCTCGACTGTATGGATCTGGAGGCAATTCAGTTTCTCTAGCTTCTCAGGCGGTTTTGTTATATG TCTTTGAGAATATACTTAAGCTGTTGCATCCGTTTATGCCGTTTGTAACCGAGGATCTATGGCAGgtaacatgctctcagttttgctatctgtgtatttc atttttacttaaattggcccttaaccatttacttaggccaactgcactgggcatgattttccttataccttagagtttttgtagtggccgtttttttacc aaagcatgcttaagctgttatctttgagtttttttttggtagtttagcctcttttgaggatgaaataaaaggaccgaaaacttagttatatatggttgat actttggtactgctaccaaaaaatgatttcagcttcataaaactgtaattatgaatgcatttataattgcagGCACTTCCCTACAGGAAAGAAGCGCTCA TTGTGTCTCCATGGCCACAAAATTCACTTCCAAGGAATGTTGAATCAATAAAAAGATTTGAGAATTTACAAGCTCTGgtcagtatgaatttttaccttaa tatattctgtaaacctcaaacagaaccatacttaaaggaattaatatttatactattaaaagttcagagcatgttgacaccttgcctgttaaatcacagA CTAGAGCAATTCGAAATGCACGAGCAGAGTATTCAGTGGAACCAGTAAAGCGTATATCTGCCTCAGTTGTTGGAAGTGCAGAGGTCATTGAATATATTTC Ggtcagtaacttgtggcttcctaacagttaaattatcttacgaataaggttcatcagtttgccttgtgtttccttattaaaaactgtgttcttgtggcgg tgcagAAAGAGAAGGAGGTATTAGCTCTTCTATCCAGGCTTGACTTAAACAACGTCCATTTTTCCAATGCCCCTCCTGgtataattatctttaatccttt ttttctcttttcttttcattgtttgcatcttatctcaatatttacattttcgatgattcccttgaatcatcatggtcacaacaaaacttcacatggttgg tccttcagGTGATGCAAATCTATCAGTCCACCTTGTAGCCAGTGAAGGACTCGAGGCATATCTACCTCTTGCAGCCATGGTTGATATATCATCTGAAGTC CAACGCATTTCTAAACGTCTCTCCAAGATGCAAACTGAATATGACGCCCTCATAACTCGTCTCAGTTCACCAAAGgtataccataaccatcaaaagagtc tcttaaacccttgctagaaattgttttcgataagcttattaaacatggtgcattagttttagactctgcttgttttacaacatttttaacgctgaaatat gtagTTTGTGGAGAAAGCTCCAGAAGAAGTGGTGAGAGGTGTAAAGGAGCAAGTAGAAGAATTAGAAGAGAAGATAAAGTTGACCAAAGCTAGGCTTGAT TTTCTCAAGTCTACTACTTCTTTAGTGTCTCAGTAAattcaggtagttcttattctctcaagttcggacccgaccaatagcggcccatggaccatttaat tgtgatcatttgagtcgatgagactacctactattaatatttctgttttttgaggacccaattagtttgaaaatgcccccaaaaatgatcaattgtcaac tattttaccagtcctattgtcggggcccataatgccttttaagcagaaagtggattttatttttattttattttgacagcagaaagtggatatattatta atttattatatttgctggttatgttacaattgtatttactattatttaatagcctcaccaactaggtaaattttgtaccaataatcagtaatcagaacaa catagctcttttcacaaaagtttgtttttgttccaaaattgaaaaatccataaccattttattaggtaaatttattaggtggttgggcgtatggtttcga taca
Border_1 (67816_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTATATATNTCCGTATTA
TATATGNAGCNNACACTTAGTANNAATACCATGCATNAAANAGCTTGNANTTTGAACGNGGANNTGNNCCTGAGTGGCNATACCAGCNTGATCAGTCCCG
GGANGCCAAAGTGTTGGTCTCCCATTCATCCTATNGTATCGAACCATAATANCCTGTANNAAACANAAAAGCGATGAGAATAGCNGAACTATAGTATAAC
ACAGTTNC
| Start of BLAST Alignment: | NT 1216 / Exon 5 of 27 |
| First 15 bp Perfect Match: | NT 943 / Exon 4 of 27 |
BLAST Details: Query Sequence: 67816_LB1 Length: (408 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g16715 68418.t01777 tRNA synthetase class I (I, L, M a... 815 5.2e-31 1 >At5g16715 68418.t01777 tRNA synthetase class I (I, L, M and V) family protein similar to SP|P11931 Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (VALRS) {Bacillus stearothermophilus}; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V) Length = 8052 Minus Strand HSPs: Score = 815 (128.3 bits), Expect = 5.2e-31, P = 5.2e-31 Identities = 285/409 (69%), Positives = 285/409 (69%), Strand = Minus / Plus Query: 408 GNAACTGTGTTATACTATAGTTCNGCTATTCTCATCGCTTTTNTGTTTNNTACAGGNTAT 349 | ||||||||||||||||||||| |||||||||||||||||| ||||| |||||| ||| Sbjct: 824 GTAACTGTGTTATACTATAGTTCTGCTATTCTCATCGCTTTTTTGTTTTTTACAGGATAT 883 Query: 348 TATGGTTCGATACNATAGGATGAATGGGAGACCAACACTTTGGCNTCCCGGGACTGATCA 289 ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 884 TATGGTTCGATACAATAGGATGAATGGGAGACCAACACTTTGGCTTCCCGGGACTGATCA 943 Query: 288 NGCTGGTATNGCCACTCAGGNNCANNTCCNCGTTCAAANTNCAAGCTNTTTNATGCATGG 229 |||||||| |||||||||| || ||| |||||||| | |||||| ||| ||||||| Sbjct: 944 TGCTGGTATTGCCACTCAGGTTCATTTCCTCGTTCAAATTTCAAGCTTTTT--TGCATGG 1001 Query: 228 TATTNNTACTAAGTGTNNGC-TNCATATATAATACGGANATAT-ATACA-A-ATTGACG- 174 |||| ||||| |||| || | | | | | | | ||| || | | || | Sbjct: 1002 TATTTCTACTA-GTGTTTGCGTGTTTGTTTTGTGCTCAC-TATGATTCTTACATCTTCTT 1059 Query: 173 CTTAGACAACTTAATAACACATTGCGGACGTTTTTAATGTACTGAATTAACGCCGAATTG 114 ||| |||| | || | | ||| | | ||| ||| ||| || | Sbjct: 1060 CTTC-ACAA-TCCATTGCTC-TTGTTC-CTATACCAATCTACCACATTTACTTTGTCAAA 1115 Query: 113 AA-TTCGATTTGGTGTATCG-AGA-TTGGTTAT-GAAATTCAGATGCTAGTGTAATGTAT 58 || ||| ||| |||| | | | || || || || | | | ||| | ||| || Sbjct: 1116 AAGTTCT-TTTCTTGTAGAGTATAATTTGT-ATAGATAAT-ATTTGC-ATTGTT-TGG-- 1168 Query: 57 TGGTAATTTGGGAAGATATAATAG-GAAGCAAGGCTATTTATC-CATTT 11 || ||| ||| |||| || ||||| ||||| | || || Sbjct: 1169 TGAATGTTTCTGAA-ATATTCTACTGAAGCTGCAATATTTCTTTCAGTT 1216
Border_2 (67816_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGA:TTCA:TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTTGTGCTCACTATGA
TTCTTACATCTTCTTCTTCACAATCCATTGCTCTTGTTCCTATACCAATCTACCACATTTACTTTTGTCAAAAAGTTCTTTTCTTGTAGAGTATAAATTT
GGATAGATAATATTTTGCATTTG
| Start of BLAST Alignment: | NT 995 / Intron 4 of 26 |
| First 15 bp Perfect Match: | NT 1023 / Intron 4 of 26 |
BLAST Details: Query Sequence: 67816_LB2 Length: (321 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g16715 68418.t01777 tRNA synthetase class I (I, L, M a... 667 2.6e-24 1 At4g15300 68417.t02208 cytochrome P450 family protein sim... 211 0.00099 1 At4g23470 68417.t03163 hydroxyproline-rich glycoprotein f... 207 0.0016 1 At3g14350 68416.t01610 leucine-rich repeat transmembrane ... 190 0.0099 1 >At5g16715 68418.t01777 tRNA synthetase class I (I, L, M and V) family protein similar to SP|P11931 Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (VALRS) {Bacillus stearothermophilus}; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V) Length = 8052 Plus Strand HSPs: Score = 667 (106.1 bits), Expect = 2.6e-24, P = 2.6e-24 Identities = 155/173 (89%), Positives = 155/173 (89%), Strand = Plus / Plus Query: 147 GCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTTGTGCTCACTATGATTCTTACA 206 ||| || || || | || | |||| ||||||||||||||||||||||||||||| Sbjct: 996 GCATGGTATTTCTAC-TAGTGTTTGCGTG--TTTGTTTTGTGCTCACTATGATTCTTACA 1052 Query: 207 TCTTCTTCTTCACAATCCATTGCTCTTGTTCCTATACCAATCTACCACATTTACTTTTGT 266 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1053 TCTTCTTCTTCACAATCCATTGCTCTTGTTCCTATACCAATCTACCACATTTACTTT-GT 1111 Query: 267 CAAAAAGTTCTTTTCTTGTAGAGTATAAATTTGGATAGATAATATTTTGCATT 319 |||||||||||||||||||||||||||| |||| ||||||||||||| ||||| Sbjct: 1112 CAAAAAGTTCTTTTCTTGTAGAGTATAA-TTTGTATAGATAATATTT-GCATT 1162 >At4g15300 68417.t02208 cytochrome P450 family protein similar to Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066) [Arabidopsis thaliana]; contains Pfam profile: PF00067: Cytochrome P450 Length = 2026 Minus Strand HSPs: Score = 211 (37.7 bits), Expect = 0.00099, P = 0.00099 Identities = 149/248 (60%), Positives = 149/248 (60%), Strand = Minus / Plus