At3g52590 SYNGENTA 68089
Genomic Sequence (from TAIR)
tgtctttggaccttgggaatgatagaaacgatttgttatagctactctatgtatcagaccctgaccaagatccaacaatctcataggttttgtgcatatg aaaccttcgactaacgagaagtggtcttttaatgagagagatatctaaaatgttatcttaaaagcccactcaaatctcaaggcataaggtagaaatgcaa atttggaaagtgggctgggccttttgtggtaaaggcctgtaacctagcccaatattagcaaaaccctagacgcgtacattgacatatataaacccgcctc ctccttgtttagggttt►ctacg►tgagagaagacgaaacacaaaagATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACCATCACTCTCGAGGTCGA GAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAAGAAGgtatcattcttcctcactcaatctggattcttctctttagctttttgaaa ttcagatctcttatcatttacttgtttctcctttaagGAATCCCTCCGGATCAGCAGAGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACTT TGGCTGACTACAACATCCAGAAAGgtacgaaatcatccgaatccttctgttgatcatttcgatgatctgattgtataaactctaatggattgttatcatt tgtaaacagAATCTACACTTCATCTTGTGTTGAGGCTTAGAGGAGGTATTATTGAGCCTTCCTTGATGATGCTTGCTCGTAAGTACAATCAGGATAAGAT GATTTGCCGCAAgtaagtttcaatttctccctaagattgtagttttgttgattaatagttcaaagtaccaaatgtttattagtgtgttagggttttagtt gttttaatgggaattaacttagcttctcaagccttatacaatgcgtgttgaggttataaatgttcccaatatcaaacatttccattctctaaactttgtc agctggtcaaatttctcatctttccagatgattttcttgaatggtacatttttgcaaatggttttgaaaatgtgttgaagcttgtatttttgattgctga aacatcttgtttgttggatagtttgtcatctatggtccgatctgatgtctcaatgagattattctaatgtaaatttcgcatcttttggtagGTGCTATGC TCGTCTTCACCCAAGAGCTGTCAACTGCAGGAAGAAGAAGTGTGGTCACAGCAACCAGgtttgtttttgttacttgtttctttttggtgtttatcagctg aaatgatatctgaacaaactttttttatttgcagTTGAGGCCTAAGAAGAAGATCAAGTAGagagactcttatcaagaatcccatctcttgcttgctttt ttttgttgtcttccctttgatagggtttgtttttcttgtttcagtgactttctatgttaaaagataatgtcagtaaaaggatttggttttctattattct gaatcgattacggaagattcttgcttaattccaatctatacaagtatcgtgaaataatgaccgtttatgtgattaggagacgtgtttcattaataaaata taagatcaatacattgttagtagtgataaactatgtacaaattgtattgattgtaaaagaaacacaataggttccttttttctacaatatattgtgacag actctctgttttaacgaatgaattaaatttgtcaacgaaaaaattaaagaatgatgtgaTCACTTTGCACCTTGGTTCATCTTCAGAGGCTTCTGCATGT TC
Border_1 (68089_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCAATTMATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACATGAGAGAA
GACGAAACACAAAAGATGCAGATCTTCGTGAAAACCTTGACCGGCAAGACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCA
AGATCCAAGACAAAGAAGGTATCATTCTTCCTCACTCAATCTGGATTCTTCTCTTTAGCTTTTTGAAATTCAGATCTCTTATCATTTACTTGTTTCTCCT
TTAAGGAATCCCTCCGGATCAGCAGAGATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACTTTGGCTGACTACAACATCCAGAAAGGTACGAAA
TCATCCGAATCCTTCTGTTGATCATTTCGATGATCTGATTGTATAAACTCTAATGGATTGTTATCATTNGTAAACAGAATCTACACTTCATCTTGNGTTG
AGGCTTANAGGAGGCATNATNGANCCTTCCNTTGANGATGCTTGCTCGTAAGNACAATCAGGATAAGATGANNTGCCGNAAGNAAGTTNCAACTTCTACC
TAANATTGCAGNTTTTGCTGATTAATAGNTCAAAGCACCCAATGTTTATTAAGCGNNGNNACGGCCTCAGCTNGTTNNTAATGGGCAATTAACTTAAGNT
TCTCNAGCCCTTANCNAATGGCC
| Start of BLAST Alignment: | NT < 28 / 5’ UTR |
| First 15 bp Perfect Match: | NT < 23 / 5’ UTR |
BLAST Details: Query Sequence: 68089_LB1 Length: (823 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g52590 68416.t05385 ubiquitin extension protein 1 (UBQ... 2711 7.5e-118 1 At2g47110 68415.t05365 ubiquitin extension protein 6 (UBQ... 459 2.1e-30 2 At2g47115 68415.t05366 expressed protein 459 2.6e-28 2 At3g62250 68416.t06459 ubiquitin extension protein 5 (UBQ... 420 5.3e-28 2 >At3g52590 68416.t05385 ubiquitin extension protein 1 (UBQ1) / 60S ribosomal protein L40 (RPL40B) identical to GI:166929, GI:166930 Length = 1297 Plus Strand HSPs: Score = 2711 (412.8 bits), Expect = 7.5e-118, P = 7.5e-118 Identities = 579/624 (92%), Positives = 579/624 (92%), Strand = Plus / Plus Query: 188 CCACATGAGAGAAGACGAAACACAAAAGATGCAGATCTTCGTGAAAACCTTGACCGGCAA 247 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5 CTACGTGAGAGAAGACGAAACACAAAAGATGCAGATCTTCGTGAAAACCTTGACCGGCAA 64 Query: 248 GACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCA 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65 GACCATCACTCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCA 124 Query: 308 AGACAAAGAAGGTATCATTCTTCCTCACTCAATCTGGATTCTTCTCTTTAGCTTTTTGAA 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 AGACAAAGAAGGTATCATTCTTCCTCACTCAATCTGGATTCTTCTCTTTAGCTTTTTGAA 184 Query: 368 ATTCAGATCTCTTATCATTTACTTGTTTCTCCTTTAAGGAATCCCTCCGGATCAGCAGAG 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 ATTCAGATCTCTTATCATTTACTTGTTTCTCCTTTAAGGAATCCCTCCGGATCAGCAGAG 244 Query: 428 ATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACTTTGGCTGACTACAACATCCA 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 ATTGATCTTCGCCGGAAAGCAGCTCGAAGATGGCCGTACTTTGGCTGACTACAACATCCA 304 Query: 488 GAAAGGTACGAAATCATCCGAATCCTTCTGTTGATCATTTCGATGATCTGATTGTATAAA 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 GAAAGGTACGAAATCATCCGAATCCTTCTGTTGATCATTTCGATGATCTGATTGTATAAA 364 Query: 548 CTCTAATGGATTGTTATCATTNGTAAACAGAATCTACACTTCATCTTGNGTTGAGGCTTA 607 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 365 CTCTAATGGATTGTTATCATTTGTAAACAGAATCTACACTTCATCTTGTGTTGAGGCTTA 424 Query: 608 NAGGAGGCATNATNGANCCTTCCNTTGANGATGCTTGCTCGTAAGNACAATCAGGATAAG 667 |||||| || || || |||||| |||| |||||||||||||||| |||||||||||||| Sbjct: 425 GAGGAGGTATTATTGAGCCTTCC-TTGATGATGCTTGCTCGTAAGTACAATCAGGATAAG 483 Query: 668 ATGANNTGCCGNAAGNAAGTTNCAACTTCTACCTAANATTGCAGNTTTTGCTGATTAATA 727 |||| ||||| ||| ||||| ||| |||| ||||| |||| || ||||| ||||||||| Sbjct: 484 ATGATTTGCCGCAAGTAAGTTTCAATTTCTCCCTAAGATTGTAG-TTTTGTTGATTAATA 542 Query: 728 GNTCAAAGCACCCAATGTTTATTAAGCGNNGNNACGGCCTCAGCTNGTTNNTAATGGGCA 787 | |||||| ||| ||||||||||| | | | | || | || | ||| ||||||| | Sbjct: 543 GTTCAAAGTACCAAATGTTTATTA-GTGT-GTTAGGGTTTTAG-TTGTTT-TAATGGG-A 597 Query: 788 ATTAACTTAAGNTTCTCNAGCCCT 811 ||||||||| | ||||| |||| | Sbjct: 598 ATTAACTTA-GCTTCTCAAGCCTT 620 >At2g47110 68415.t05365 ubiquitin extension protein 6 (UBQ6) / 40S ribosomal protein S27A (RPS27aB) identical to GI:166936 Length = 629 Plus Strand HSPs: Score = 459 (74.9 bits), Expect = 2.1e-30, Sum P(2) = 2.1e-30 Identities = 105/120 (87%), Positives = 105/120 (87%), Strand = Plus / Plus