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At1g21390 SYNGENTA 68144

Genomic Sequence (from TAIR)

cctgtttaagtgtgagcatgctcgaacatcaattaatgacaattgacgagtacactaatcaattactctagaagagttgatgactttttatgggaagatg
atctagaagcacttgacttttaacaactctaatccattaagtaaacacttcctcaaatccggtacgaatacgatctgcaaattaaattaaaccccaaaat
tggacagcaacaacaacaacgtcctcatattaaatagggactatttaaccactctgagaacaacgtgacgttttaaattaaagccccaatagcaaagata
gaaaaaagaaactttatttctcttagtaatacaataatccttatagaacgggtcaagcaagatatcttttttgtttgtttcccttgttaatcgttataaa
cttgtttctcaataaaacttgagtttttaaaaatccagtcttgcaaattcatcgacgATGTTAGATCCTTCTTCTGCTAAATCCTTCAATACCCATTTGT
GTTTTCCGAGTATTCCCAATGATGATCACTCAGATTCCGGTGTCTGTTCGCCTACTTTGTGGAGAACCAGTCCCCCGAAGAGTCCTCCTCCTTTTCACCG
GCCGGAAGATTACTGGAGTCTTTCGCCGGATTCTAAAGCACAGGCTATTGCTCGTGGTCAACGGGAGCTTATGGAAATGGTTAGTAAGATGCCTGAGTCG
TGTTACGAGCTTTCATTGAAGGATCTTGTTGAAGTTAAGGTGAATCAAGAGAATGAACGGAAGGTGTTCGATGAATTG◄CCTAAGAGAGCAAATAGGCAG
►AGTAAAGTTGTGAGGAAGACGAAGAGTGATAAACGGGTTGATCCGAATAGGAGTGGAGGAGGAAATAATAGTGGGTTTCTTCTCAAAATTATGTTTCTG
GTTAGTTTAGGAGCTATGAAGGATACGACTAAGAAGAAGAAG◄AAGAAGAAAAAGGATGAGGCTTGTAAGGTTTCACCGAGACCTTCGATCTCTGAGGAG
ACTGTGAAAGTAGAGGATAAAGAATGGTGGAATAGAATGTCTGAATCGAGCACAAAGAGGAGTGGTAGTAGCAGTAGCAACAACAGTATTAGGAGCCGAA
GCAGCTTAAGgtatgttttcaaactgaagaatcaaagttttcatctttcatatcttacttacgcaatactacttggatttgctttgctaataagatttga
tgaaagtttttgtttgccaagaaaagaaaaagctgacttttgattgtttccactttttcattgtgttttttcatcacgtgagtcttttactatcttgttg
gttgtatgaaaatgttgttgtctagttgatgaccttttgaaagagtgtgaatggtgtgagtgaagctctttatcttccccgttagaaatgaaactgtcta
gactacaattttagtgaagttttgattcaagaatatctatctgaatgattcctagtctcattatgcaaatcttgttgccatttattgaaactctcgaggt
ttgatgtttgaaactgtctgctgtattttgcagGGATGAAAAAAGTAGCTGCTTCTCTTTTCTTACATTCAAGAAACTAATTCCTCAGTATCTGAAACAA
AGATTTATTGGCTTAAGAAGCAGAGCTTGAtaaacgcatacactcgagtcagtgtttgcagtctaatcttcaggaggaacagctcagagaacggacacaa
agatgatcacttttccgataaatttttgcttctgcaaaagcctaagtatccttttggatatggttttaagttatgtaaatagagattaatgtgcagttgt
gcactgattagtctctcacaactcttggattttgaattctaatgtacagtggtgtttagtgtttagaatctacttgattttttttttacctttagttatc
aaaagcctaaaaccaataataacaatctttgccttaaaaggagtgtcatgtttttgttcaaagagaaagctgctgtgaaagaattggtacgagagtggtc
ccattgtggacttatgagacagaatatttgttttggagttgttgttccatccaaacgcgcgtcttcatttcctgcgtttgggaaacgcgtttaccgtggt
ttg

Border_1 (68144_LB2U)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTRGCATCTGAATTTCATAACCAATCTCGATA:
:CACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATTC
ATCGAACACCTTCCGTTCATTCTCTTGATTCACCTTAACTTCAACAAGATCCTTCAATGAAAGCTCGTAACACGACTCAGGCATCTTACTAACCATTTCC
ATAAGCTCCCGTTGACCACGAGCAATAGCCTGTGCTTTAGAATCCGGCGAAAGACTCCAGTAATCTTCCGGCCGGTGAAAAGGAGGAGGACTCTTCGGGG
GACTGGTTCTCCACAAAGTAGGCGAACAGACACCGGAATCTGAGTGATCATCATTGGGAATACTCGGAAAACACAAATGGGTATTGAAGGATTTAGCAGA
AGAAGGATCTAACATCGTCGATGAATTTGCAAGACTGGATTTTTAAAAACTCAAGTTTTATTGAGAAACAAGTTTATAACGATTAACAAGGGAAACAAAC
AAAAAAGATATCTTGCTTGACCCGTTCTATAAGGATTATTGTATTACTAAGAGAAATAAAGTTTCTTTTTTCTATCTTTGCTATTGGGGCTTTAATTTAA
AACGTCACGTTGTTCTCAGAGTGGTTAAATAGTCCCTATTTAATATGAGGACGTTGTTGTTGTGTGCTGTCCAATTTTGGGGTTTAATTTAATTTGCAGA
TCGTATTCGTACCGGATTTGAGGAAGTGTTTACTTAATGGATTAGAGTT

Start of BLAST Alignment:	NT 483 / Exon 1 of 2
First 15 bp Perfect Match:	NT 321 / Exon 1 of 2

BLAST Details:
Query Sequence: 68144_LB2U 
Length: (847 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g21390 68414.t02398 expressed protein                      2525  1.5e-109  1
At1g76980 68414.t08198 expressed protein                       707  4.1e-27   1
At5g56310 68418.t06522 pentatricopeptide (PPR) repeat-con...   201  0.74      1
At2g25340 68415.t02835 synaptobrevin family protein simil...   186  0.998     1


>At1g21390 68414.t02398 expressed protein
        Length = 1587

  Minus Strand HSPs:

 Score = 2525 (384.9 bits), Expect = 1.5e-109, P = 1.5e-109
 Identities = 594/678 (87%), Positives = 595/678 (87%), Strand = Minus / Plus

Query:   696 AAATTAAAGCCCCAATAGCAAAGATAGAAAAAAGAAACTTTATTTCTCTTAGTAATACAA 637
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:     1 AAATTAAAGCCCCAATAGCAAAGATAGAAAAAAGAAACTTTATTTCTCTTAGTAATACAA 60

Query:   636 TAATCCTTATAGAACGGGTCAAGCAAGATATCTTTTTTGTTTGTTTCCCTTGTTAATCGT 577
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    61 TAATCCTTATAGAACGGGTCAAGCAAGATATCTTTTTTGTTTGTTTCCCTTGTTAATCGT 120

Query:   576 TATAAACTTGTTTCTCAATAAAACTTGAGTTTTTAAAAATCCAGTCTTGCAAATTCATCG 517
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   121 TATAAACTTGTTTCTCAATAAAACTTGAGTTTTTAAAAATCCAGTCTTGCAAATTCATCG 180

Query:   516 ACGATGTTAGATCCTTCTTCTGCTAAATCCTTCAATACCCATTTGTGTTTTCCGAGTATT 457
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   181 ACGATGTTAGATCCTTCTTCTGCTAAATCCTTCAATACCCATTTGTGTTTTCCGAGTATT 240

Query:   456 CCCAATGATGATCACTCAGATTCCGGTGTCTGTTCGCCTACTTTGTGGAGAACCAGTCCC 397
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   241 CCCAATGATGATCACTCAGATTCCGGTGTCTGTTCGCCTACTTTGTGGAGAACCAGTCCC 300

Query:   396 CCGAAGAGTCCTCCTCCTTTTCACCGGCCGGAAGATTACTGGAGTCTTTCGCCGGATTCT 337
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   301 CCGAAGAGTCCTCCTCCTTTTCACCGGCCGGAAGATTACTGGAGTCTTTCGCCGGATTCT 360

Query:   336 AAAGCACAGGCTATTGCTCGTGGTCAACGGGAGCTTATGGAAATGGTTAGTAAGATGCCT 277
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   361 AAAGCACAGGCTATTGCTCGTGGTCAACGGGAGCTTATGGAAATGGTTAGTAAGATGCCT 420

Query:   276 GAGTCGTGTTACGAGCTTTCATTGAAGGATCTTGTTGAAGTTAAGGTGAATCAAGAGAAT 217
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   421 GAGTCGTGTTACGAGCTTTCATTGAAGGATCTTGTTGAAGTTAAGGTGAATCAAGAGAAT 480

Query:   216 GAACGGAAGGTGTTCGATGAATTGTGGTGTAAA-CAAATTGACGCTTAGACAACTTAATA 158
             ||||||||||||||||||||||||      | | ||||| |  ||  ||  || ||   |
Sbjct:   481 GAACGGAAGGTGTTCGATGAATTGCCTAAGAGAGCAAATAG--GCAGAGTAAAGTTGTGA 538

Query:   157 ACACATTGCGGACGTTTTTAATGTACTGAATTAACGCCGAATTGAATTCGATTTGGTG-T 99
               |    |  || ||  | ||   || |  || |  |||||| | | | ||   ||   |
Sbjct:   539 GGAAGACGAAGA-GTGAT-AA---ACGGG-TTGAT-CCGAATAGGAGTGGAGGAGGAAAT 591

Query:    98 A-TCGAGA-TTGGTTATGAAATTCA-GATGCYAGTGTAATGTATTGGTAATTTGGGA-A- 44
             | | | |  ||  || | ||| | | | | |+ || || | ||   |  ||   ||| | 
Sbjct:   592 AATAGTGGGTTTCTTCTCAAAATTATGTTTCTGGT-TAGTTTAGGAGCTATGAAGGATAC 650

Query:    43 GATATAATAGGAAGCAAG 26
             ||  ||| | |||| |||
Sbjct:   651 GAC-TAAGAAGAAG-AAG 666


>At1g76980 68414.t08198 expressed protein
        Length = 777

  Minus Strand HSPs:

 Score = 707 (112.1 bits), Expect = 4.1e-27, P = 4.1e-27
 Identities = 187/235 (79%), Positives = 187/235 (79%), Strand = Minus / Plus

Border_2 (68144_LB1D)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAGTAAAGTTGTGAGGAAGACGAAGAGTGAT
AAACGGGTTGATCCGAATAGGAGTGGAGGAGGAAATAATAGTGGGTTTCTTCTCAAAATTATGTTTCTGGTTAGTTTAGGAGCTATGAAGGATACGACTA
AGAAGAAGAAGAAGAAGAAAAAGGATGAGGCTTGTAAGGTTTCACCGAGACCTTCGATCTCTGAGGAGACTGTGAAAGTAGAGGATAAAGAATGGTGGAA
TAGAATGTCTGAATCGAGCACAAAGAGGAGTGGTAGTAGCAGTAGCAACAACAGTAT

Start of BLAST Alignment:	NT 342 / Exon 1 of 2
First 15 bp Perfect Match:	NT 342 / Exon 1 of 2

BLAST Details:
Query Sequence: 68144_LB1D 
Length: (457 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g21390 68414.t02398 expressed protein                      1295  5.5e-54   1
At1g76980 68414.t08198 expressed protein                       404  2.2e-23   2


>At1g21390 68414.t02398 expressed protein
        Length = 1587

  Plus Strand HSPs:

 Score = 1295 (200.4 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 267/287 (93%), Positives = 267/287 (93%), Strand = Plus / Plus

Query:   171 AGTAAAGTTGTGAGGAAGACGAAGAGTGATAAACGGGTTGATCCGAATAGGAGTGGAGGA 230
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   526 AGTAAAGTTGTGAGGAAGACGAAGAGTGATAAACGGGTTGATCCGAATAGGAGTGGAGGA 585

Query:   231 GGAAATAATAGTGGGTTTCTTCTCAAAATTATGTTTCTGGTTAGTTTAGGAGCTATGAAG 290
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   586 GGAAATAATAGTGGGTTTCTTCTCAAAATTATGTTTCTGGTTAGTTTAGGAGCTATGAAG 645

Query:   291 GATACGACTNNNNNNNNNNNNNNNNNNNNAAAGGATGAGGCTTGTAAGGTTTCACCGAGA 350
             |||||||||                    |||||||||||||||||||||||||||||||
Sbjct:   646 GATACGACTAAGAAGAAGAAGAAGAAGAAAAAGGATGAGGCTTGTAAGGTTTCACCGAGA 705

Query:   351 CCTTCGATCTCTGAGGAGACTGTGAAAGTAGAGGATAAAGAATGGTGGAATAGAATGTCT 410
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   706 CCTTCGATCTCTGAGGAGACTGTGAAAGTAGAGGATAAAGAATGGTGGAATAGAATGTCT 765

Query:   411 GAATCGAGCACAAAGAGGAGTGGTAGTAGCAGTAGCAACAACAGTAT 457
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   766 GAATCGAGCACAAAGAGGAGTGGTAGTAGCAGTAGCAACAACAGTAT 812


>At1g76980 68414.t08198 expressed protein
        Length = 777

  Plus Strand HSPs:

 Score = 404 (66.7 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
 Identities = 104/133 (78%), Positives = 104/133 (78%), Strand = Plus / Plus