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At1g02780 SYNGENTA 68235

Genomic Sequence (from TAIR)

acattataaagataagataaacatctgtatatatacattggtatacaatatttttcataaatttttttttctctaatcgacagttatatatatacagaac
cataatttttaaagcatgctttccaatgcgttttttttttttttttttttttttgtaaaccaaagccgtgtttctaaacctcaatttataaatttggtgt
agcttttcaaccttgatgaaattattacatagaatcattcgttaaaagacttataattgggtttagaaaagcccattttaaatttaaagcccaatatact
gctcgaaaaggaggaaaccctagaaacattgtggtatataaattcttttcgtctcgttcgctaatcagttctccgccacaccaatctccagaaaagggga
gaagcaaaaATGGTTTCTCTGAAGCTCCAGAAGCGGCTCGCCGCATCAGTGATGAAGTGCGGGAAGGGCAAAGTTTGGCTCGATCCCAACGAAAGCTCCG
ACATCTCCATGGCCAATTCCCgtatgttgttgcttttttcttcatccttttacttttattgttgtcctgtgtttgtctgcgacggtggtagacggtctta
ggtgttgaatcactgtgtttgtttccgatctgaaaatttagagcttgtaggtgttgttacggtttcatttctctagttataggccttgtagaactgtgat
ttgtctcgtgaatcaaagctagaggatttgatttctgatattgcttcttaatagactga◄gg◄atttgaatgatgttccatttcgagtattg►ttgttat
atatttgaagatctttgtagcttcaaatattaagaatgtgatgattggtgttgaacttattgtagGCCAAAACATCAGGAAGCTTGTGAAGGATGGTTTC
ATCATCAGGAAGCCAACCAAGATTCACTCTCGTTCCAGAGCTCGCAAAATGAAGATTGCCAAGATGAAGGGTCGTCACTCTGGATACGgtatatacttca
caactctgaaaatccctctatttaatcgtgattttgaagaatgattagcgttgtttactcttgccttttttcctgtgtttatgattaaatagGTAAGAGG
AAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGATGCGTAGGATGCGTGTTCTTAGGCGTCTGTTGAAGAAATACAGAGAGACGAAGAAGA
TTGACAAGCACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGCGTGTCTTGATGGAGAGTATCCACAAGTCAAAGGCTGA
GAAGGCTAGGGAGAAGACTCTGTCTGATCAGTTTGAGGCTAAGAGGGCGAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTAGGAGAGAGGAGCGTTTA
GCTAAGgtcagagcttaacttcttacaaactttataaagtttttttttaattttgatcagagattcttatgtgttgtggattgtttgcttgtagGGTCCC
GGTGGAGATGTTGCGCCTGTAGCTGCTCCAGCACCTGCTGCTACACCTGCTCCAACTGCAGCgtaagtgttatttcaattttgttgtgaattgaatttgt
ttcaaattggttaacatctatctaaatcgtgtatgtgtgtttttttgcttgtgcagTGTACCGAAGAAGAAGTCTAAGAAGTGAagaggatatatagtgt
gaagctatatcgatcatcagttcacggattagactctgaagaaggttttgaatgttttatcgaatgcgtttgtggaataacttttattttcgcaaagaac
ataacttatgtcagttaatctttatgctttcagatttttagcttacagtgtttcaacagacctactttgcaagttgttctttttttggtttcttattgtt
tttcgttcgtcatacgcaattacaaaataaccatccattaatccatccataaattgttaaattttagaattaatatatgcaataacaaccatcatctatt
tcgaagtgttgtttattttcttttgactttcgttttgttgattcttcactctactcctccagatgatccaacaagtggtccacctcttctgtctgctgag
agc

Border_1 (68235_LBD)


AATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTG
CCACCAGCCAGCCAACAGCTCCCCGACCGGCAGCTCGGCACAAAATCACCACTCGATACAGGCAGCCCATCAGTCTATTAAGAAGCAATATCAGAAATCA
AATCCTCTAGCTTTGATTCACGAGACAAATCACAGTTCTACAAGGCCTATAACTAGAGAAATGAAACCGTAACAACACCTACAAGCTCTAAATTTTCAGA
TCGGAAACAAACACAGTGATTCAACACC

Start of BLAST Alignment:	NT 352 / Intron 1 of 4
First 15 bp Perfect Match:	NT 350 / Intron 1 of 4

BLAST Details:
Query Sequence: 68235_LBD 
Length: (328 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g02780 68414.t00207 60S ribosomal protein L19 (RPL19A)...   796  6.6e-31   1
At1g75410 68414.t08014 BEL1-like homeodomain 3 protein (B...   202  0.0027    1
At2g39750 68415.t04493 dehydration-responsive family prot...   166  0.992     1
At2g06555 68415.t00663 expressed protein                       161  0.997     1


>At1g02780 68414.t00207 60S ribosomal protein L19 (RPL19A) similar to ribosomal
           protein L19 GI:36127 from [Homo sapiens]
        Length = 1615

  Minus Strand HSPs:

 Score = 796 (125.5 bits), Expect = 6.6e-31, P = 6.6e-31
 Identities = 160/161 (99%), Positives = 160/161 (99%), Strand = Minus / Plus

Query:   328 GGTGTTGAATCACTGTGTTTGTTTCCGATCTGAAAATTTAGAGCTTGTAGGTGTTGTTAC 269
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   236 GGTGTTGAATCACTGTGTTTGTTTCCGATCTGAAAATTTAGAGCTTGTAGGTGTTGTTAC 295

Query:   268 GGTTTCATTTCTCTAGTTATAGGCCTTGTAGAACTGTGATTTGTCTCGTGAATCAAAGCT 209
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   296 GGTTTCATTTCTCTAGTTATAGGCCTTGTAGAACTGTGATTTGTCTCGTGAATCAAAGCT 355

Query:   208 AGAGGATTTGATTTCTGATATTGCTTCTTAATAGACTGATG 168
             ||||||||||||||||||||||||||||||||||||||| |
Sbjct:   356 AGAGGATTTGATTTCTGATATTGCTTCTTAATAGACTGAGG 396


>At1g75410 68414.t08014 BEL1-like homeodomain 3 protein (BLH3) identical to
           BEL1-like homeodomain 3 (GI:13877515) [Arabidopsis thaliana]
        Length = 2780

  Minus Strand HSPs:

 Score = 202 (36.4 bits), Expect = 0.0027, P = 0.0027
 Identities = 104/173 (60%), Positives = 104/173 (60%), Strand = Minus / Plus

Border_2 (68235_AbB_U)


ACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTT
GTCTAAACGTCAATTTGTTATATATTTGAAGATCTTTGTAGCTTCAAATATTAAGAATGTGATGATTGGTGTTGAACTTATTGTAGGCCAAAACATCAGG
AAGCTTGTGAAGGATGGTTTCATCATCAGGAAGCCAACCAAGATTCACTCTCGTTCCAGAGCTCGCAAAATGAAGATTGCCAAGATGAAGGGTCGTCACT
CTGGATACGGTATATACTTCACAACTCTGAAAATCCCTCTATTTAATCGTGATTTTGAAGAATGATTAGCGTTGTTTACTCTTGCCTTTTTTCCTGTGTT
TATGATTAAATAGGTAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGATGCGTAGGATGCGTGTTCTTAGGCGTCTGTTGAAGA
AATACAGAGAGACGAAGAAGATTGACAAGCACATGTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGCGTGTCTTGATGGAGAG
TATCCACAAGTCAAAGGCTGAGAAGGCTAGGGAGAAGACTCTGTCTGATCAGTTTGAGGCTAAGAGGGCGAAGAACAAGGCTAGCCGAGAAAGGAAGCAT
GCTAGGAGAGAGGAGCGTTTAGCTAAGGTCAGAGCT

Start of BLAST Alignment:	NT 381 / Intron 1 of 4
First 15 bp Perfect Match:	NT 381 / Intron 1 of 4

BLAST Details:
Query Sequence: 68235_AbB_U 
Length: (736 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g02780 68414.t00207 60S ribosomal protein L19 (RPL19A)...  3110  5.7e-136  1
At4g02230 68417.t00276 60S ribosomal protein L19 (RPL19C)...  1204  7.9e-50   1
At3g16780 68416.t01903 60S ribosomal protein L19 (RPL19B)...  1063  1.8e-43   1
At4g16030 68417.t02295 60S ribosomal protein L19, putativ...   335  1.3e-09   1


>At1g02780 68414.t00207 60S ribosomal protein L19 (RPL19A) similar to ribosomal
           protein L19 GI:36127 from [Homo sapiens]
        Length = 1615

  Plus Strand HSPs:

 Score = 3110 (472.7 bits), Expect = 5.7e-136, P = 5.7e-136
 Identities = 622/622 (100%), Positives = 622/622 (100%), Strand = Plus / Plus

Query:   115 TTGTTATATATTTGAAGATCTTTGTAGCTTCAAATATTAAGAATGTGATGATTGGTGTTG 174
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   426 TTGTTATATATTTGAAGATCTTTGTAGCTTCAAATATTAAGAATGTGATGATTGGTGTTG 485

Query:   175 AACTTATTGTAGGCCAAAACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGC 234
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   486 AACTTATTGTAGGCCAAAACATCAGGAAGCTTGTGAAGGATGGTTTCATCATCAGGAAGC 545

Query:   235 CAACCAAGATTCACTCTCGTTCCAGAGCTCGCAAAATGAAGATTGCCAAGATGAAGGGTC 294
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   546 CAACCAAGATTCACTCTCGTTCCAGAGCTCGCAAAATGAAGATTGCCAAGATGAAGGGTC 605

Query:   295 GTCACTCTGGATACGGTATATACTTCACAACTCTGAAAATCCCTCTATTTAATCGTGATT 354
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   606 GTCACTCTGGATACGGTATATACTTCACAACTCTGAAAATCCCTCTATTTAATCGTGATT 665

Query:   355 TTGAAGAATGATTAGCGTTGTTTACTCTTGCCTTTTTTCCTGTGTTTATGATTAAATAGG 414
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   666 TTGAAGAATGATTAGCGTTGTTTACTCTTGCCTTTTTTCCTGTGTTTATGATTAAATAGG 725

Query:   415 TAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGATGCGTAGGAT 474
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   726 TAAGAGGAAGGGTACCCGTGAAGCTAGGTTGCCAACAAAGGTACTGTGGATGCGTAGGAT 785

Query:   475 GCGTGTTCTTAGGCGTCTGTTGAAGAAATACAGAGAGACGAAGAAGATTGACAAGCACAT 534
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   786 GCGTGTTCTTAGGCGTCTGTTGAAGAAATACAGAGAGACGAAGAAGATTGACAAGCACAT 845

Query:   535 GTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGCGTGTCTTGAT 594
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   846 GTACCATGACATGTACATGCGTGTTAAGGGTAATGTGTTCAAGAACAAGCGTGTCTTGAT 905

Query:   595 GGAGAGTATCCACAAGTCAAAGGCTGAGAAGGCTAGGGAGAAGACTCTGTCTGATCAGTT 654
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   906 GGAGAGTATCCACAAGTCAAAGGCTGAGAAGGCTAGGGAGAAGACTCTGTCTGATCAGTT 965

Query:   655 TGAGGCTAAGAGGGCGAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTAGGAGAGAGGA 714
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   966 TGAGGCTAAGAGGGCGAAGAACAAGGCTAGCCGAGAAAGGAAGCATGCTAGGAGAGAGGA 1025

Query:   715 GCGTTTAGCTAAGGTCAGAGCT 736
             ||||||||||||||||||||||
Sbjct:  1026 GCGTTTAGCTAAGGTCAGAGCT 1047


>At4g02230 68417.t00276 60S ribosomal protein L19 (RPL19C) similar to L19 from
           several species
        Length = 1439

  Plus Strand HSPs:

 Score = 1204 (186.7 bits), Expect = 7.9e-50, P = 7.9e-50
 Identities = 440/632 (69%), Positives = 440/632 (69%), Strand = Plus / Plus