At1g80070 SYNGENTA 69077
Genomic Sequence (from TAIR)
gagcgagcgagcgagagaatcgggagagtttgttttccggggaaaaaccgcaattactgctatatagctccccaataaatgccaaaacaaaaaatcaaat taaagtttgtcaatgggcatcacggcccaaatctaataatcaaaggcccaataacttgattcgacaatacttagcgggtttggataaccgcctaagcatc tgttcgacaccgcctattttttttttttacttactcctcctgatctgctgatataaggccgaacgggaataaaaaaaaaaaaaaaggaagaagcgactca cccgaaaatgttttagggtttttctttactcgattaagctcactagttcttcgcaacgtagttagagatcgacactggcgcggtggatttagggtttttt tcctccgcgactacgctcggcgtttcgatttggaaccctaagctATGTGGAACAACAACGATGGTATGCCCTTAGCTCCTCCTGGTACTGGCGGGTCCAT GATGCCGCCACCTCCCGCTGCTCATCCTTCTTACACGGCGCTTCCGCCGCCTTCTAATCCGACTCCTCCGGTCGAGCCTACTCCTGAGGAAGCGGAGGCT AAGCTTGAGGAGAAGGCCCGAAAATGGATGCAGCTAAATTCCAAACGGTACGGCGACAAGAGGAAGTTTGGATTCGTTGAAACTCAGAAGGAGGACATGC CACCTGAGCACGTCAGGAAGATCATCAGGCTAGTTTTCTTCTCTTCTTTCTCTACCATTTCGAAATACAGTTTACTTGATAATTATTTTCTGGCTAGgtt tctaagatttggttaggatttacttattttgagactgaagctgcgatttctttcttacttcagAGATCAT►GGTGATATGTCATCCAAGAAATTCCGTCA CGACAAACGTGTATACCTTGGAGCCCTTAAATTCGTCCCTCACGCAGTTTTCAAGCTCTTGGAGAA►CATGCCTATGCCCTGGGAGCAGgtacatttttt ttcctttagcttcagctgttttcatcgtctgttcatttatctaaatcctcattttctttcagGTCCGAGATGTAAAAGTTTTGTACCACATCACCGGAGC TATTACATTTGTGAACGAGATACCATGGGTTGTGGAACCTATTTACATGGCTCAGgttggtgattagtcttatctcttatttactgtctc◄tgtgcgctg atggattttcaatagcttttgatggttattccattcttgttttgcagTGGGGTACTATGTGGATTATGATGCGAAGGGAGAAGAGGGATCGTCGTCATTT CAAGAGAATGCGGTTCCCACCTTTTGATGATGAGGAGCCTCCACTAGACTATGCAGACAACTTGCTGGACGTGGATCCTCTGGAGCCAATTCAATTGGAG CTAGATGAGGAAGAAGATTCTGCTGTCCACACTTGGTTTTACGACCACAAGCCACTCGTTAAAACAAAACTGATTAATGGTCCCAGTTACCGGAGGTGGA ACCTCTCACTTCCAATCATGGCAACCCTTCACAGGCTTGCAGGCCAGTTGCTGTCTGATTTGATTGATCGCAACTACTTCTACTTATTTGACATGCCATC TTTCTTCACAGCAAAAGCTCTGAACATGTGCATACCTGgtacgccattttccttctatgctccagtttttatatttttgctgcgggtccattgcttttaa tgcattctcctactcttttccagGTGGACCCAAGTTTGAACCTTTGTACCGTGATATGGAGAAAGGGGATGAGGACTGGAATGAGTTTAATGACATCAAC AAGCTCATTATTCGTTCCCCTCTGCGTACTGAGTACAGAATAGCTTTTCCCCATCTCTACAATAATCGGCCCAGGAAAGTAAAACTCTGTGTGTATCACA GTCCTATGATCATGTATATAAAGACCGAGGATCCCGATCTTCCTGCATTTTATTATGATCCGTTGATTCACCCAATAAGCAACACCAACAAGGAAAAACG TGAAAGGAAGGTTTATGATGATGAGGATGACTTCGCCTTACCAGAAGGTGTGGAACCTTTGCTAAGAGATACCCAACTCTACACTGACACTACAGCTGCT GGCATATCATTGTTGTTTGCCCCACGACCTTTCAATATGAGGTCTGGGAGGACGCGCCGCGCAGAAGATATTCCCTTGGTGTCAGAGTGGTTCAAAGAGC ACTGgtaagctatttgtttttattctactttggtcctctttaccgttttgaaatttactggtgaccgtcctaatacatattgtgaactcattaactgcag TCCTCCAGCCTATCCGGTTAAAGTTCGGGTTAGTTACCAAAAGCTATTGAAGTGCTATGTGCTGAATGAGTTGCACCATAGACCGCCTAAAGCTCAGAAG AAGAAGCACTTGTTTCGATCTCTTGCAGCTACAAAGTTTTTCCAAAGTACCGAACTGGATTGGGTTGAAGTGGGTCTGCAAGTCTGTCGGCAGGGATATA ATATGCTGAATCTGCTGATTCATAGGAAGAATTTAAACTACCTGCATCTTGACTACAACTTCAACCTCAAGCCTGTGAAAACTTTGACCACCAAAGAGCG AAAGAAGTCACGTTTTGGGAACGCTTTCCATCTGTGCCGTGAGATCCTCCGCCTGACAAAACTTGTAGTTGATGCAAATGTCCAATTCCGACTTGGTAAT GTCGATGCCTTCCAATTGGCTGATGGTCTGCAGTATATTTTCTCTCATGTTGGCCAGTTGACGGGTATGTATCGTTATAAATACAGACTGATGAGGCAGA TTCGGATGTGCAAGGATTTAAAGCACTTGATATATTACCGTTTCAATACTGGTCCGGTGGGTAAGGGTCCAGGGTGTGGATTTTGGGCTCCAATGTGGAG GGTATGGTTGTTTTTCCTTCGGGGTATAGTTCCTCTTCTTGAAAGATGGTTAGGGAATCTTCTTGCTCGTCAATTTGAGGGGCGTCATTCAAAAGGAGTG GCCAAAACAGTCACAAAGCAGAGAGTTGAAAGCCATTTTGATCTGGAGCTTCGGGCTGCTGTCATGCATGACGTCCTTGATGCTATGCCAGgtttccatt tttacaaacttgtttatcaacgatgaaattgctttgctttattctttggttaacattttctgataatgtgcagAGGGTATCAAGCAAAATAAAGCGCGGA CTATATTGCAGCACCTTAGTGAGGCATGGCGGTGCTGGAAAGCTAATATCCCATGGAAGGTCCCTGGGTTACCTGTGCCGATTGAAAATATGATCCTGCG TTATGTCAAGTCTAAGGCTGATTGGTGGACGAATGTTGCTCACTACAATCGTGAGCGTATCCGAAGAGGGGCTACTGTTGATAAGACAGTTTGTAGAAAG AATCTCGGAAGGTTGACTCGTCTTTGGCTAAAGGCAGAACAGgtctgttcattgtcttaatgactttgtcatttttgtttgaacattttatgaaactgcg ttatatattgatgcgttatccttgtaaaactgttacagGAACGACAGCACAATTACCTGAAAGATGGTCCGTATGTCACTCCAGAAGAAGCACTTGCAAT TTATACAACTACTGTTCATTGGCTGGAATCAAGGAAGTTCTCACCAATTCCATTCCCTCCATTGTCATACAAACATGACACAAAGTTGCTCATCCTTGCC CTTGAGAGACTGAAGGAATCATATAGTGTAGCTGTGAGGTTGAACCAGCAGCAGCGAGAAGAGCTTGGTTTGATTGAACAAGCTTATGACAATCCTCATG AAGCTCTATCACGAATAAAACGTCATCTTCTCACCCAACGAGGCTTTAAAGAGgtaactttatatttcactctatattggagcattggattgacataggt cttcaaggttactgttgtaaaatgatggtgaatatgtttttcttgcagGTTGGCATAGAATTTATGGATCTTTATAGCTACTTGATTCCAGTTTATGAAA TAGAGCCTCTAGAGAAAATTACCGATGCATATCTTGATCAATACTTGTGGTACGAAGGTGACAAGCGTCACTTGTTTCCAAACTGGATTAAGCCAGCAGA CTCAGAGCCGCCCCCACTTCTGGTTTATAAATGGTGTCAAGGTATCAACAATTTGCAAGGCATATGGGACACAGGTGATGGGCAGTGTGTGGTGATGCTC CAAACTAAGTTCGAAAAGTTCTTTGAGAAAATCGATTTGACAATGTTGAACAGgtacatatctattcatactttattaattatagacattgagccacgac tttctggagtaataaatattttgtgttgtttctttcagGCTTCTTCGTTTGGTTCTTGACCACAATATTGCAGACTATGTGTCCGCCAAGAATAATGTGG TCCTGTCTTACAAGGATATGAGTCATACTAACTCGTATGGTCTCATTAGGGGACTTCAGTTTGCATCGTTTGTTGTTCAGTTTTATGGACTATTGCTTGA TCTTTTGCTTCTTGGTTTGACTCGAGCGAGTGAAATTGCTGGGCCACCTCAGATGCCTAATGAGTTTATGACGTTTTGGGATACAAAAGTGGAGACACGC CATCCCATAAGACTCTATTCTCGGTATATAGACAAAGTTCATATAATGTTTAAATTTACCCATGAAGAAGCTCGGGATCTTATTCAGCGATATCTTACGG AGCATCCCGATCCCAACAATGAAAACATGGTGGGATACAACAATAAGAAGTGCTGGCCAAGAGATGCAAGGATGAGACTGATGAAACATGATGgtatgtt cttccctttttgttttatataatccggttgactatcatttatacattagatgttcatgttgtgtctcattgattattcttctttcagTCAATCTTGGTAG AAGTGTCTTCTGGGACATGAAGAACCGTCTTCCTCGGAGCATCACTACTTTGGAGTGGGAGAATGGCTTTGTCTCTGTCTATAGCAAGGATAATCCTAAC CTGCTCTTTAGCATgtaagtcttttattcgagcattctagtccatctgatattagtgctagggcttcgtttagaccgtaatttggtactgctatcgacat tagtgactcttttgcatcttgcttgcagGTGTGGATTTGAAGTCCGGATACTCCCTAAAATCAGGATGACCCAAGAAGCTTTCAGCAACACAAAAGATGG TGTCTGGAATCTGCAAAATGAACAGACGAAGGAGAGGACTGCAGTAGCTTTTCTGCGGGTTGACGATGAACACATGAAGGTATTTGAGAATCGTGTGAGG CAGATCCTCATGTCATCAGGATCAACCACCTTTACCAAGATCGTCAACAAATGGAATACAGCTCTAATTGgtacaatcctatgagccttggtttgcatca ttgttagttttttatgatgtgttgtttagcatgaaactgatcacatactcttttataaacagGTCTCATGACTTACTTCCGGGAAGCCACTGTACACACG CAAGAGCTCTTGGATCTACTGGTCAAGTGTGAGAATAAAATCCAAACCAGGATTAAGATTGGGCTGAACTCAAAGATGCCTAGTCGgtaagcaaacgcta tcttactgaatttatggtcgacatagtagagctgtgtgtttatgtttctgtaacctgattgttctacttctctttggcagATTTCCTCCTGTTATCTTCT ACACTCCAAAGGAAATTGGTGGGCTGGGAATGTTGTCAATGGGACATATTTTGATCCCACAAAGTGACCTTCGGTACAGCAAGCAAACAGATGTTGGTGT AACCCACTTTAGGAGTGGAATGAGCCACGAGGAAGATCAGCTTATACCAAATCTTTACCGTTACATACAGCCGTGGGAAAGTGAATTTATTGATTCACAG CGGGTGTGGGCAGAATATGCTTTGAAGAGGCAGGAAGCCCAAGCCCAAAATAGGCGTCTTACACTGGAAGATCTGGAAgtaagtatcatacttgtgtatt tgttacctctttacttaaatgtcgaattttgagagagatatcagcgtgctagcttgctttcttttggtaatcttggaagtagtcttttctctttgcttga cagagggttttgggaggatatcattttgttgtgttgtcctctttttgtgaattttatttgcttctagaaatatctgatcattgaggtagaataataactc gtgtataaaaatatgacagGATTCTTGGGATAGGGGAATTCCTCGTATAAATACACTGTTTCAGAAGGATAGGCACACTTTGGCATATGATAAAGGTTGG AGGGTTCGGACCGACTTCAAGCAGTACCAAGTCCTTAAACAAAATCCATTCTGGTGGACACACCAGAGACATGATGGGAAGTTGTGGAACTTGAACAATT ACCGCACTGATGTCATCCAAGCTCTTGGAGGTGTTGAGGGTATTCTTGAGCACACATTATTCAAGGGGACATAgtaagtctgcttttcatttctcctcta ctaattatgatatttgtttcctaatagcataggacgttcagttgcgcacagcttttgttctcagcctatcacatcatatatgctaattttttcgtgcttt acatgaactcagTTTCCCGACATGGGAGGGACTTTTCTGGGAGAAGGCGTCTGGTTTTGAGGAGTCGATGAAATATAAGAAGTTGACTAATGCTCAGAGG TCTGGTCTGAACCAGATTCCAAATAGAAGATTCACGCTTTGGTGGTCGCCAACAATTAATCGAGCGAATGTCTATGTGGGTTTCCAAGTGCAGTTGGATC TGACAGGAATATTTATGCATGGAAAGATTCCTACACTTAAGATATCTTTGATTCAGATTTTCCGTGCCCATTTGTGGCAGAAGATCCATGAGAGTGTTGT TATGGATCTCTGCCAAGTATTGGACCAAGAGTTGGACGCTTTGGAGATAGAAACTGTACAGAAGGAGACAATTCATCCAAGGAAGAGTTATAAAATGAAC AGCTCTTGTGCTGATGTTCTTCTATTTGCTGCTCATAAATGGCCAATGTCTAAGCCTAGCCTGGTTGCAGAGTCGAAGGATATGTTCGACCAGAAAGCGA GTAACAAGTATTGGATAGATGTGCAACTTCGATGGGGAGATTATGACTCTCATGATATTGAGCGTTATACTAGGGCCAAATTCATGGACTATACAACTGA CAACATGTCTATCTATCCATCTCCAACAGgtatttattactttttccattttactttgttttgttagtctttacttttctgcagtatgtatcaaattttc ttactaaatctgtgcagGTGTAATGATTGGGCTTGATCTGGCATACAACCTGCATTCTGCCTTTGGTAATTGGTTCCCTGGATCAAAGCCTCTTCTTGCT CAAGCGATGAACAAGATCATGAAGgtaatcaattttcttcttgggtgtcttttgcagtactcgttttgtttagatctatgacttaccgtttaaaatttac atattgcagTCCAATCCGGCTCTATATGTGTTGAGAGAGAGGATAAGGAAAGGTTTGCAGCTATACTCGTCTGAGCCTACAGAGCCATATTTGTCATCTC AAAACTATGGTGAAATATTCAGCAATCAGATTATATGGTTTGTTGATGATACCAATGTTTATCGTGTCACGATTCACAAGACATTTGAAGGAAATTTAAC GACAAAGCCAATCAATGGTGCGATTTTCATTTTCAATCCAAGAACTGGGCAGTTGTTCCTGAAGgtatttcttcctctcccgcacttcactttaagaaca ggcatatatgcattgttctacaaaactactacttctgtttctctagtaacaggctacagaatcttaagtaactgttttttcttgtcctttagGTTATCCA TACAAGTGTTTGGGCTGGTCAGAAGCGTCTTGGCCAGCTAGCGAAATGGAAAACTGCAGAAGAGGTTGCTGCACTTGTGCGATCTCTCCCTGTTGAAGAA CAGCCAAAGCAGATTATTGTCACACGGAAAGGAATGTTGGATCCCCTTGAGGTTCACTTGCTTGATTTCCCCAACATTGTTATTAAGGGAAGCGAGCTGC AGCTTCCGTTCCAGGCTTGCCTAAAGATAGAGAAATTTGGTGACCTGATTTTGAAGGCTACAGAACCGCAGATGGTCTTGTTTAATATATATGATGATTG GTTGAAGAGTATTTCTTCTTATACTGCCTTTTCAAGACTTATTTTGATCCTTCGTGCGCTTCACGTGAATAATGAGAAGGCTAAGATGTTGTTGAAGCCT GACAAGTCCGTTGTCACTGAGCCACATCACATCTGGCCCTCTCTCACTGATGATCAATGGATGAAGgtaactcttctgccactttccaagtacttcttct tgctatattcttttatttgataggatccctctttacattctatatctgctgtttttatttactagtgagttatgtgatatatagcttttactttcttctc tttttttgaaatagtccttccttactcacgatcatgttaaattcagGTGGAGGTAGCACTTAGAGATCTTATTCTTTCTGACTACGCAAAGAAAAACAAT GTGAATACCTCAGCTCTGACACAATCAGAGATCCGAGATATTATTCTTGGAGCTGAGATTACTCCACCCTCTCAACAGAGGCAACAGATAGCTGAGATTG AGAAACAGgtactcgtaactgttacttctatgttctatcaggttttctaacaaacacaaacattgtgagagtggactgtgactattattctttgttcact gtaaatctatatcctatttgcagGCAAAGGAAGCCAGCCAGCTTACTGCAGTCACAACAAGAACTACAAATGTTCATGGTGATGAGCTCATTGTCACCAC CACAAGCCCTTACGAGCAATCTGCATTCGGTTCCAAGACAGATTGGCGTGTACGTGCAATATCAGCCACTAATCTTTACCTTAGAGTCAATCACATATAT GTGAACTCAGATGACATAAAGgttagaatccaattcactttgtcaattaagtaaaagcctttcaggtgtcgaccttaaacactgtctgttgttgtcacag GAAACCGGATACACCTACATCATGCCAAAGAACATTTTGAAGAAGTTCATATGCGTTGCGGATCTTCGTACTCAAATTGCTGGGTATTTATATGGTATTA GTCCCCCGGATAATCCCCAGGTGAAGGAGATCCGTTGTGTTGTGATGGTGCCACAGTGGGGAAATCATCAGCTAGTTCACCTGCCGTCATCTCTTCCTGA GCATGATTTCCTAAATGATCTTGAGCCCTTGGGATGGTTGCACACACAGCCTAACGAGCTGCCTCAGCTATCACCACAGgtatatatatatatatattta tctttaccttctgttaacctcattgctaactgatcttttctttgatagGATGTAACCTCTCATTCCCGTATTCTGGAGAACAACAAGCAATGGGATGGAG AAAAATGCATCATCCTGACCTGCAGTTTCACTCCGGGCTCCTGCTCTTTGACGTCATATAAGTTGACCCAAACCGGATATGAATGGGGGCGGCTTAACAA GGACAATGGCAGCAATCCTCACGGTTACCTTCCCACCCATTATGAAAAGGTTCAGATGCTGCTGAGTGACCGGTTCCTCGGGTTTTACATGgtaagacaa cagagtttgcaattgtgcttttgtccttggatgatataaaccattgaaatctgatttttgtaactgatgttatgatagGTTCCTGAGAGTGGACCGTGGA ACTATAGCTTCACTGGAGTGAAGCACACGTTGAGCATGAAATACAGTGTCAAACTCGGATCCCCAAAGGAGTTCTATCACGAGGAGCATCGACCCACTCA TTTCCTGGAGTTCAGCAACATGGAGGAGGCTGACATTACAGAGGGAGATCGCGAGGACACATTTACTTGAgatatactcaattttcttaccgtgtgtgtg atttagctttattttgcagtatagacttgtaagatgttgtactgtcttgtgctttactgagatagatagtaaggtccctaaatcttaaaaagatggtttg ccactataatcaaaatcttgaatgtgatgtaatcatacgtacgtgtataacggaattttggtaactaacgtcttcgatgagagaaaataaaacgacaaat ttaaactattttaagaggtttttcccatttcgaataaacgccaaatgtacaaaacatggaagaacaagcaatacaagtctcttatctccggaaagataaa acagagatcaaagaacagagtatatagacagaaggaacacgttcgagcttacaagttttttttgtagccataaatggtggcgatattcaatccaactaat gcagaaaaggcatctaactaacattattaaactcgggaagtatttacagcagttttatcatccctcctCTAACTAGATATTAGCATAAAAATGAAATTAG GGA
Border_1 (69077_LB1U)
ATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTGATAACACATGC
CTATGCCCTGGGAGCAGGTACATTTTTTTTCCTTTAGCTTCAGCTGTTTTCATCGTCTGTTCATTTATCTAAATCCTCATTTTCTTTCAGGTCCGAGATG
TAAAAGTTTTGTACCACATCACCGGAGCTATTACATTTGTGAACGAGATACCATGGGTTGTGGAACCTATTTACATGGCTCAGGTTGGTGATTAGTCTTA
TCTCTTATTTACTGTCTCTGTGCTCTGATGGTTTTTCAATAGCTTTTGATGGTTATTCCATTCTTGTTTTGCAGTGGGGTACTATGTGGATTATGATGCG
AAGGGAGAAGAGGGATCGTCGTCATTTCAAGAGAATGCGGTTCCCACCTTTTGATGATGAGGAGCCTCCACTAGACTATGCAGACAACTTGCTGGACGTG
GATCCTCTGGAGCCAATTCAATTGGAGCTAGATGAGGAAGAAGATTCTGCTGTCCACACTTGGTTTTACGACCACAAGCCACTCGTTAAAACAAAACTGA
TTAATGGTCCCAGTTACCGGAGGTGGAACCTCTCACTTTCAATCATGGCAACCCCTTCACAGGCTTGCAGGCCAGTTGCTTGCCTGATTTGATTGATCGC
AACTACTTCTACTTATTTGACATGCCATCTTTTCTTC
| Start of BLAST Alignment: | NT 426 / Exon 2 of 23 |
| First 15 bp Perfect Match: | NT 521 / Exon 2 of 23 |
BLAST Details: Query Sequence: 69077_LB1U Length: (737 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g80070 68414.t08552 splicing factor, putative strong s... 3082 1.2e-133 1 At4g38780 68417.t05043 splicing factor, putative strong s... 2073 6.0e-88 1 At1g23330 68414.t02616 expressed protein 187 0.994 1 At2g11840 68415.t01205 gypsy-like retrotransposon family ... 185 0.999 1 >At1g80070 68414.t08552 splicing factor, putative strong similarity to splicing factor Prp8 [Homo sapiens] GI:3661610; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family Length = 9760 Plus Strand HSPs: Score = 3082 (468.5 bits), Expect = 1.2e-133, P = 1.2e-133 Identities = 680/741 (91%), Positives = 680/741 (91%), Strand = Plus / Plus Query: 5 GGCGTTAATTCAGTACATTAAAAAC-GTC-CG-CAAT-GTGTTATTAAGTTGTCTAAGCG 60 || | || ||| | || ||| | ||| || ||| |||| || | ||| | Sbjct: 427 GGTGATATGTCA-TCCAAGAAATTCCGTCACGACAAACGTGT-AT-ACCTTGGAGCC-CT 482 Query: 61 TCAATTTGTTTA-CAC-CACAATATATCCTGATA-ACA-CATGCCTATGCCCTGGGAGCA 116 | |||| || ||| || | | || | | | ||||||||||||||||||||| Sbjct: 483 TAAATTCGTCCCTCACGCAGTTTTCAAGCTCTTGGAGAACATGCCTATGCCCTGGGAGCA 542 Query: 117 GGTACANNNNNNNNCCTTTAGCTTCAGCTGTTTTCATCGTCTGTTCATTTATCTAAATCC 176 |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 543 GGTACATTTTTTTTCCTTTAGCTTCAGCTGTTTTCATCGTCTGTTCATTTATCTAAATCC 602 Query: 177 TCATTTTCTTTCAGGTCCGAGATGTAAAAGTTTTGTACCACATCACCGGAGCTATTACAT 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 603 TCATTTTCTTTCAGGTCCGAGATGTAAAAGTTTTGTACCACATCACCGGAGCTATTACAT 662 Query: 237 TTGTGAACGAGATACCATGGGTTGTGGAACCTATTTACATGGCTCAGGTTGGTGATTAGT 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 663 TTGTGAACGAGATACCATGGGTTGTGGAACCTATTTACATGGCTCAGGTTGGTGATTAGT 722 Query: 297 CTTATCTCTTATTTACTGTCTCTGTGCTCTGATGGTTTTTCAATAGCTTTTGATGGTTAT 356 ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct: 723 CTTATCTCTTATTTACTGTCTCTGTGCGCTGATGGATTTTCAATAGCTTTTGATGGTTAT 782 Query: 357 TCCATTCTTGTTTTGCAGTGGGGTACTATGTGGATTATGATGCGAAGGGAGAAGAGGGAT 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 783 TCCATTCTTGTTTTGCAGTGGGGTACTATGTGGATTATGATGCGAAGGGAGAAGAGGGAT 842 Query: 417 CGTCGTCATTTCAAGAGAATGCGGTTCCCACCTTTTGATGATGAGGAGCCTCCACTAGAC 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 843 CGTCGTCATTTCAAGAGAATGCGGTTCCCACCTTTTGATGATGAGGAGCCTCCACTAGAC 902 Query: 477 TATGCAGACAACTTGCTGGACGTGGATCCTCTGGAGCCAATTCAATTGGAGCTAGATGAG 536 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 903 TATGCAGACAACTTGCTGGACGTGGATCCTCTGGAGCCAATTCAATTGGAGCTAGATGAG 962 Query: 537 GAAGAAGATTCTGCTGTCCACACTTGGTTTTACGACCACAAGCCACTCGTTAAAACAAAA 596 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 963 GAAGAAGATTCTGCTGTCCACACTTGGTTTTACGACCACAAGCCACTCGTTAAAACAAAA 1022 Query: 597 CTGATTAATGGTCCCAGTTACCGGAGGTGGAACCTCTCACTTTCAATCATGGCAACCCCT 656 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct: 1023 CTGATTAATGGTCCCAGTTACCGGAGGTGGAACCTCTCACTTCCAATCATGGCAACCC-T 1081 Query: 657 TCACAGGCTTGCAGGCCAGTTGCTTGCCTGATTTGATTGATCGCAACTACTTCTACTTAT 716 |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| Sbjct: 1082 TCACAGGCTTGCAGGCCAGTTGCT-GTCTGATTTGATTGATCGCAACTACTTCTACTTAT 1140 Query: 717 TTGACATGCCATCTTTTCTTC 737 |||||||||||||||| |||| Sbjct: 1141 TTGACATGCCATCTTT-CTTC 1160 >At4g38780 68417.t05043 splicing factor, putative strong similarity to splicing factor Prp8 [Homo sapiens] GI:3661610; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family Length = 9653 Plus Strand HSPs: Score = 2073 (317.1 bits), Expect = 6.0e-88, P = 6.0e-88 Identities = 541/667 (81%), Positives = 541/667 (81%), Strand = Plus / Plus
Border_2 (69077_Direct_D)
GAGACAGTAAATAAGAGATAAGACTAATCACCAACCTGAGCCATGTAAATAGGTTCCACAACCCATGGTATCTCGTTCACAAATGTAATAGCTCCGGTGA
TGTGGTACAAAACTTTTACATCTCGGACCTGAAAGAAAATGAGGATTTAGATAAATGAACAGACGATGAAAACAGCTGAAGCTAAAGGAAAAAAAATGTA
CCNTGCTCCCAGGGCATAGGCATGTGTTATCAGGATATATTGTGGTGTAAACAAATTGACGCTTAGACAACTTAATAACACATTGCGGACGTTTTTAATG
TACTGAATTAACGCCGAATTGAATTCGATTTGGTGTATCGAGATTGGTTATGAAATAGAATTNGCTTA
| Start of BLAST Alignment: | NT 744 / Intron 3 of 23 |
| First 15 bp Perfect Match: | NT 744 / Intron 3 of 23 |
BLAST Details: Query Sequence: 69077_Direct_D Length: (368 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g80070 68414.t08552 splicing factor, putative strong s... 1058 5.4e-42 1 At4g38780 68417.t05043 splicing factor, putative strong s... 570 6.6e-20 1 At5g18480 68418.t01974 glycogenin glucosyltransferase (gl... 165 0.9999 1 >At1g80070 68414.t08552 splicing factor, putative strong similarity to splicing factor Prp8 [Homo sapiens] GI:3661610; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family Length = 9760 Minus Strand HSPs: Score = 1058 (164.8 bits), Expect = 5.4e-42, P = 5.4e-42 Identities = 268/323 (82%), Positives = 268/323 (82%), Strand = Minus / Plus Query: 315 GGCGTTAATTCAGTACATTAAAAAC-GTC-CG-CAAT-GTGTTATTAAGTTGTCTAAGCG 260 || | || ||| | || ||| | ||| || ||| |||| || | ||| | Sbjct: 427 GGTGATATGTCA-TCCAAGAAATTCCGTCACGACAAACGTGT-AT-ACCTTGGAGCC-CT 482 Query: 259 TCAATTTGTTTA-CAC-CACAATATATCCTGATA-ACA-CATGCCTATGCCCTGGGAGCA 204 | |||| || ||| || | | || | | | ||||||||||||||||||||| Sbjct: 483 TAAATTCGTCCCTCACGCAGTTTTCAAGCTCTTGGAGAACATGCCTATGCCCTGGGAGCA 542 Query: 203 NGGTACANNNNNNNNCCTTTAGCTTCAGCTGTTTTCATCGTCTGTTCATTTATCTAAATC 144 |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 543 -GGTACATTTTTTTTCCTTTAGCTTCAGCTGTTTTCATCGTCTGTTCATTTATCTAAATC 601 Query: 143 CTCATTTTCTTTCAGGTCCGAGATGTAAAAGTTTTGTACCACATCACCGGAGCTATTACA 84 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 602 CTCATTTTCTTTCAGGTCCGAGATGTAAAAGTTTTGTACCACATCACCGGAGCTATTACA 661 Query: 83 TTTGTGAACGAGATACCATGGGTTGTGGAACCTATTTACATGGCTCAGGTTGGTGATTAG 24 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 662 TTTGTGAACGAGATACCATGGGTTGTGGAACCTATTTACATGGCTCAGGTTGGTGATTAG 721 Query: 23 TCTTATCTCTTATTTACTGTCTC 1 ||||||||||||||||||||||| Sbjct: 722 TCTTATCTCTTATTTACTGTCTC 744 >At4g38780 68417.t05043 splicing factor, putative strong similarity to splicing factor Prp8 [Homo sapiens] GI:3661610; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family Length = 9653 Minus Strand HSPs: Score = 570 (91.6 bits), Expect = 6.6e-20, P = 6.6e-20 Identities = 180/246 (73%), Positives = 180/246 (73%), Strand = Minus / Plus