At1g80070 SYNGENTA 69634
Genomic Sequence (from TAIR)
gagcgagcgagcgagagaatcgggagagtttgttttccggggaaaaaccgcaattactgctatatagctccccaataaatgccaaaacaaaaaatcaaat taaagtttgtcaatgggcatcacggcccaaatctaataatcaaaggcccaataacttgattcgacaatacttagcgggtttggataaccgcctaagcatc tgttcgacaccgcctattttttttttttacttactcctcctgatctgctgatataaggccgaacgggaataaaaaaaaaaaaaaaggaagaagcgactca cccgaaaatgttttagggtttttctttactcgattaagctcactagttcttcgcaacgtagttagagatcgacactggcgcggtggatttagggtttttt tcctccgcgactacgctcggcgtttcgatttggaaccctaagctATGTGGAACAACAACGATGGTATGCCCTTAGCTCCTCCTGGTACTGGCGGGTCCAT GATGCCGCCACCTCCCGCTGCTCATCCTTCTTACACGGCGCTTCCGCCGCCTTCTAATCCGACTCCTCCGGTCGAGCCTACTCCTGAGGAAGCGGAGGCT AAGCTTGAGGAGAAGGCCCGAAAATGGATGCAGCTAAATTCCAAACGGTACGGCGACAAGAGGAAGTTTGGATTCGTTGAAACTCAGAAGGAGGACATGC CACCTGAGCACGTCAGGAAGATCATCAGGCTAGTTTTCTTCTCTTCTTTCTCTACCATTTCGAAATACAGTTTACTTGATAATTATTTTCTGGCTAGgtt tctaagatttggttaggatttacttattttgagactgaagctgcgatttctttcttacttcagAGATCATGGTGATATGTCATCCAAGAAATTCCGTCAC GACAAACGTGTATACCTTGGAGCCCTTAAATTCGTCCCTCACGCAGTTTTCAAGCTCTTGGAGAACATGCCTATGCCCTGGGAGCAGgtacatttttttt cctttagcttcagctgttttcatcgtctgttcatttatctaaatcctcattttctttcagGTCCGAGATGTAAAAGTTTTGTACCACATCACCGGAGCTA TTACATTTGTGAACGAGATACCATGGGTTGTGGAACCTATTTACATGGCTCAGgttggtgattagtcttatctcttatttactgtctctgtgcgctgatg gattttcaatagcttttgatggttattccattcttgttttgcagTGGGGTACTATGTGGATTATGATGCGAAGGGAGAAGAGGGATCGTCGTCATTTCAA GAGAATGCGGTTCCCACCTTTTGATGATGAGGAGCCTCCACTAGACTATGCAGACAACTTGCTGGACGTGGATCCTCTGGAGCCAATTCAATTGGAGCTA GATGAGGAAGAAGATTCTGCTGTCCACACTTGGTTTTACGACCACAAGCCACTCGTTAAAACAAAACTGATTAATGGTCCCAGTTACCGGAGGTGGAACC TCTCACTTCCAATCATGGCAACCCTTCACAGGCTTGCAGGCCAGTTGCTGTCTGATTTGATTGATCGCAACTACTTCTACTTATTTGACATGCCATCTTT CTTCACAGCAAAAGCTCTGAACATGTGCATACCTGgtacgccattttccttctatgctccagtttttatatttttgctgcgggtccattgcttttaatgc attctcctactcttttccagGTGGACCCAAGTTTGAACCTTTGTACCGTGATATGGAGAAAGGGGATGAGGACTGGAATGAGTTTAATGACATCAACAAG CTCATTATTCGTTCCCCTCTGCGTACTGAGTACAGAATAGCTTTTCCCCATCTCTACAATAATCGGCCCAGGAAAGTAAAACTCTGTGTGTATCACAGTC CTATGATCATGTATATAAAGACCGAGGATCCCGATCTTCCTGCATTTTATTATGATCCGTTGATTCACCCAATAAGCAACACCAACAAGGAAAAACGTGA AAGGAAGGTTTATGATGATGAGGATGACTTCGCCTTACCAGAAGGTGTGGAACCTTTGCTAAGAGATACCCAACTCTACACTGACACTACAGCTGCTGGC ATATCATTGTTGTTTGCCCCACGACCTTTCAATATGAGGTCTGGGAGGACGCGCCGCGCAGAAGATATTCCCTTGGTGTCAGAGTGGTTCAAAGAGCACT GgtaagctatttgtttttattctactttggtcctctttaccgttttgaaatttactggtgaccgtcctaatacatattgtgaactcattaactgcagTCC TCCAGCCTATCCGGTTAAAGTTCGGGTTAGTTACCAAAAGCTATTGAAGTGCTATGTGCTGAATGAGTTGCACCATAGACCGCCTAAAGCTCAGAAGAAG AAGCACTTGTTTCGATCTCTTGCAGCTACAAAGTTTTTCCAAAGTACCGAACTGGATTGGGTTGAAGTGGGTCTGCAAGTCTGTCGGCAGGGATATAATA TGCTGAATCTGCTGATTCATAGGAAGAATTTAAACTACCTGCATCTTGACTACAACTTCAACCTCAAGCCTGTGAAAACTTTGACCACCAAAGAGCGAAA GAAGTCACGTTTTGGGAACGCTTTCCATCTGTGCCGTGAGATCCTCCGCCTGACAAAACTTGTAGTTGATGCAAATGTCCAATTCCGACTTGGTAATGTC GATGCCTTCCAATTGGCTGATGGTCTGCAGTATATTTTCTCTCATGTTGGCCAGTTGACGGGTATGTATCGTTATAAATACAGACTGATGAGGCAGATTC GGATGTGCAAGGATTTAAAGCACTTGATATATTACCGTTTCAATACTGGTCCGGTGGGTAAGGGTCCAGGGTGTGGATTTTGGGCTCCAATGTGGAGGGT ATGGTTGTTTTTCCTTCGGGGTATAGTTCCTCTTCTTGAAAGATGGTTAGGGAATCTTCTTGCTCGTCAATTTGAGGGGCGTCATTCAAAAGGAGTGGCC AAAACAGTCACAAAGCAGAGAGTTGAAAGCCATTTTGATCTGGAGCTTCGGGCTGCTGTCATGCATGACGTCCTTGATGCTATGCCAGgtttccattttt acaaacttgtttatcaacgatgaaattgctttgctttattctttggttaacattttctgataatgtgcagAGGGTATCAAGCAAAATAAAGCGCGGACTA TATTGCAGCACCTTAGTGAGGCATGGCGGTGCTGGAAAGCTAATATCCCATGGAAGGTCCCTGGGTTACCTGTGCCGATTGAAAATATGATCCTGCGTTA TGTCAAGTCTAAGGCTGATTGGTGGACGAATGTTGCTCACTACAATCGTGAGCGTATCCGAAGAGGGGCTACTGTTGATAAGACAGTTTGTAGAAAGAAT CTCGGAAGGTTGACTCGTCTTTGGCTAAAGGCAGAACAGgtctgttcattgtcttaatgactttgtcatttttgtttgaacattttatgaaactgcgtta tatattgatgcgttatccttgtaaaactgttacagGAACGACAGCACAATTACCTGAAAGATGGTCCGTATGTCACTCCAGAAGAAGCACTTGCAATTTA TACAACTACTGTTCATTGGCTGGAATCAAGGAAGTTCTCACCAATTCCATTCCCTCCATTGTCATACAAACATGACACAAAGTTGCTCATCCTTGCCCTT GAGAGACTGAAGGAATCATATAGTGTAGCTGTGAGGTTGAACCAGCAGCAGCGAGAAGAGCTTGGTTTGATTGAACAAGCTTATGACAATCCTCATGAAG CTCTATCACGAATAAAACGTCATCTTCTCACCCAACGAGGCTTTAAAGAGgtaactttatatttcactctatattggagcattggattgacataggtctt caaggttactgttgtaaaatgatggtgaatatgtttttcttgcagGTTGGCATAGAATTTATGGATCTTTATAGCTACTTGATTCCAGTTTATGAAATAG AGCCTCTAGAGAAAATTACCGATGCATATCTTGATCAATACTTGTGGTACGAAGGTGACAAGCGTCACTTGTTTCCAAACTGGATTAAGCCAGCAGACTC AGAGCCGCCCCCACTTCTGGTTTATAAATGGTGTCAAGGTATCAACAATTTGCAAGGCATATGGGACACAGGTGATGGGCAGTGTGTGGTGATGCTCCAA ACTAAGTTCGAAAAGTTCTTTGAGAAAATCGATTTGACAATGTTGAACAGgtacatatctattcatactttattaattatagacattgagccacgacttt ctggagtaataaatattttgtgttgtttctttcagGCTTCTTCGTTTGGTTCTTGACCACAATATTGCAGACTATGTGTCCGCCAAGAATAATGTGGTCC TGTCTTACAAGGATATGAGTCATACTAACTCGTATGGTCTCATTAGGGGACTTCAGTTTGCATCGTTTGTTGTTCAGTTTTATGGACTATTGCTTGATCT TTTGCTTCTTGGTTTGACTCGAGCGAGTGAAATTGCTGGGCCACCTCAGATGCCTAATGAGTTTATGACGTTTTGGGATACAAAAGTGGAGACACGCCAT CCCATAAGACTCTATTCTCGGTATATAGACAAAGTTCATATAATGTTTAAATTTACCCATGAAGAAGCTCGGGATCTTATTCAGCGATATCTTACGGAGC ATCCCGATCCCAACAATGAAAACATGGTGGGATACAACAATAAGAAGTGCTGGCCAAGAGATGCAAGGATGAGACTGATGAAACATGATGgtatgttctt ccctttttgttttatataatccggttgactatcatttatacattagatgttcatgttgtgtctcattgattattcttctttcagTCAATCTTGGTAGAAG TGTCTTCTGGGACATGAAGAACCGTCTTCCTCGGAGCATCACTACTTTGGAGTGGGAGAATGGCTTTGTCTCTGTCTATAGCAAGGATAATCCTAACCTG CTCTTTAGCATgtaagtcttttattcgagcattctagtccatctgatattagtgctagggcttcgtttagaccgtaatttggtactgctatcgacattag tgactcttttgcatcttgcttgcagGTGTGGATTTGAAGTCCGGATACTCCCTAAAATCAGGATGACCCAAGAAGCTTTCAGCAACACAAAAGATGGTGT CTGGAATCTGCAAAATGAACAGACGAAGGAGAGGACTGCAGTAGCTTTTCTGCGGGTTGACGATGAACACATGAAGGTATTTGAGAATCGTGTGAGGCAG ATCCTCATGTCATCAGGATCAACCACCTTTACCAAGATCGTCAACAAATGGAATACAGCTCTAATTGgtacaatcctatgagccttggtttgcatcattg ttagttttttatgatgtgttgtttagcatgaaactgatcacatactcttttataaacagGTCTCATGACTTACTTCCGGGAAGCCACTGTACACACGCAA GAGCTCTTGGATCTACTGGTCAAGTGTGAGAATAAAATCCAAACCAGGATTAAGATTGGGCTGAACTCAAAGATGCCTAGTCGgtaagcaaacgctatct tactgaatttatggtcgacatagtagagctgtgtgtttatgtttctgtaacctgattgttctacttctctttggcagATTTCCTCCTGTTATCTTCTACA CTCCAAAGGAAATTGGTGGGCTGGGAATGTTGTCAATGGGACATATTTTGATCCCACAAAGTGACCTTCGGTACAGCAAGCAAACAGATGTTGGTGTAAC CCACTTTAGGAGTGGAATGAGCCACGAGGAAGATCAGCTTATACCAAATCTTTACCGTTACATACAGCCGTGGGAAAGTGAATTTATTGATTCACAGCGG GTGTGGGCAGAATATGCTTTGAAGAGGCAGGAAGCCCAAGCCCAAAATAGGCGTCTTACACTGGAAGATCTGGAAgtaagtatcatacttgtgtatttgt tacctctttacttaaatgtcgaattttgagagagatatcagcgtgctagcttgctttcttttggtaatcttggaagtagtcttttctctttgcttgacag agggttttgggaggatatcattttgttgtgttgtcctctttttgtgaattttatttgcttctagaaatatctgatcattgaggtagaataataactcgtg tataaaaatatgacagGATTCTTGGGATAGGGGAATTCCTCGTATAAATACACTGTTTCAGAAGGATAGGCACACTTTGGCATATGATAAAGGTTGGAGG GTTCGGACCGACTTCAAGCAGTACCAAGTCCTTAAACAAAATCCATTCTGGTGGACACACCAGAGACATGATGGGAAGTTGTGGAACTTGAACAATTACC GCACTGATGTCATCCAAGCTCTTGGAGGTGTTGAGGGTATTCTTGAGCACACATTATTCAAGGGGACATAgtaagtctgcttttcatttctcctctacta attatgatatttgtttcctaatagcataggacgttcagttgcgcacagcttttgttctcagcctatcacatcatatatgctaattttttcgtgctttaca tgaactcagTTTCCCGACATGGGAGGGACTTTTCTGGGAGAAGGCGTCTGGTTTTGAGGAGTCGATGAAATATAAGAAGTTGACTAATGCTCAGAGGTCT GGTCTGAACCAGATTCCAAATAGAAGATTCACGCTTTGGTGGTCGCCAACAATTAATCGAGCGAATGTCTATGTGGGTTTCCAAGTGCAGTTGGATCTGA CAGGAATATTTATGCATGGAAAGATTCCTACACTTAAGATATCTTTGATTCAGATTTTCCGTGCCCATTTGTGGCAGAAGATCCATGAGAGTGTTGTTAT GGATCTCTGCCAAGTATTGGACCAAGAGTTGGACGCTTTGGAGATAGAAACTGTACAGAAGGAGACAATTCATCCAAGGAAGAGTTATAAAATGAACAGC TCTTGTGCTGATGTTCTTCTATTTGCTGCTCATAAATGGCCAATGTCTAAGCCTAGCCTGGTTGCAGAGTCGAAGGATATGTTCGACCAGAAAGCGAGTA ACAAGTATTGGATAGATGTGCAACTTCGATGGGGAGATTATGACTCTCATGATATTGAGCGTTATACTAGGGCCAAATTCATGGACTATACAACTGACAA CATGTCTATCTATCCATCTCCAACAGgtatttattactttttccattttactttgttttgttagtctttacttttctgcagtatgtatcaaattttctta ctaaatctgtgcagGTGTAATGATTGGGCTTGATCTGGCATACAACCTGCATTCTGCCTTTGGTAATTGGTTCCCTGGATCAAAGCCTCTTCTTGCTCAA GCGATGAACAAGATCATGAAGgtaatcaattttcttcttgggtgtcttttgcagtactcgttttgtttagatctatgacttaccgtttaaaatttacata ttgcagTCCAATCCGGCTCTATATGTGTTGAGAGAGAGGATAAGGAAAGGTTTGCAGCTATACTCGTCTGAGCCTACAGAGCCATATTTGTCATCTCAAA ACTATGGTGAAATATTCAGCAATCAGATTATATGGTTTGTTGATGATACCAATGTTTATCGTGTCACGATTCACAAGACATTTGAAGGAAATTTAACGAC AAAGCCAATCAATGGTGCGATTTTCATTTTCAATCCAAGAACTGGGCAGTTGTTCCTGAAGgtatttcttcctctcccgcacttcactttaagaacaggc atatatgcattgttctacaaaactactacttctgtttctctagtaacaggctacagaatcttaagtaactgttttttcttgtcctttagGTTATCCATAC AAGTGTTTGGGCTGGTCAGAAGCGTCTTGGCCAGCTAGCGAAATGGAAAACTGCAGAAGAGGTTGCTGCACTTGTGCGATCTCTCCCTGTTGAAGAACAG CCAAAGCAGATTATTGTCACACGGAAAGGAATGTTGGATCCCCTTGAGGTTCACTTGCTTGATTTCCCCAACATTGTTATTAAGGGAAGCGAGCTGCAGC TTCCGTTCCAGGCTTGCCTAAAGATAGAGAAATTTGGTGACCTGATTTTGAAGGCTACAGAACCGCAGATGGTCTTGTTTAATATATATGATGATTGGTT GAAGAGTATTTCTTCTTATACTGCCTTTTCAAGACTTATTTTGATCCTTCGTGCGCTTCACGTGAATAATGAGAAGGCTAAGATGTTGTTGAAGCCTGAC AAGTCCGTTGTCACTGAGCCACATCACATCTGGCCCTCTCTCACTGATGATCAATGGATGAAGgtaactcttctgccactttccaagtacttcttcttgc tatattcttttatttgataggatccctctttacattctatatctgctgtttttatttactagtgagttatgtgatatatagcttttactttcttctcttt ttttgaaatagtccttccttactcacgatcatgttaaattcagGTGGAGGTAGCACTTAGAGATCTTATTCTTTCTGACTACGCAAAGAAAAACAATGTG AATACCTCAGCTCTGACACAATCAGAGATCCGAGATATTATTCTTGGAGCTGAGATTACTCCACCCTCTCAACAGAGGCAACAGATAGCTGAGATTGAGA AACAGgtactcgtaactgttacttctatgttctatcaggttttctaacaaacacaaacattgtgagagtggactgtgactattattctttgttcactgta aatctatatcctatttgcagGCAAAGGAAGCCAGCCAGCTTACTGCAGTCACAACAAGAACTACAAATGTTCATGGTGATGAGCTCATTGTCACCACCAC AAGCCCTTACGAGCAATCTGCATTCGGTTCCAAGACAGATTGGCGTGTACGTGCAATATCAGCCACTAATCTTTACCTTAGAGTCAATCACATATATGTG AACTCAGATGACATAAAGgttagaatccaattcactttgtcaattaagtaaaagcctttcaggtgtcgaccttaaacactgtctgttgttgtcacagGAA ACCGGATACACCTACATCATGCCAAAGAACATTTTGAAGAAGTTCATATGCGTTGCGGATCTTCGTACTCAAATTGCTGGGTATTT◄►ATATGGTATTAG TCCCCC►GGATAATCCCCAGGTGAAGGAGATCCGTTGTGTTGTGATGGTGCCACAGTGGGGAAATCATCAGCTAGTTCACCTGCCGTCATCTCTTCCTGA GCATGATTTCCTAAATGATCTTGAGCCCTTGGGATGGTTGCACACACAGCCTAACGAGCTGCCTCAGCTATCACCACAGgtatatatatatatatattta tctttaccttctgttaacctcattgctaactgatcttttctttgatagGATGTAACCTCTCATTCCCGTATTCTGGAGAACAACAAGCAATGGGATGGAG AAAAATGCATCATCCTGACCTGCAGTTTCACTCCGGGCTCCTGCTCTTTGACGTCATATAAGTTGACCCAAACCGGATATGAATGGGGGCGGCTTAACAA GGACAATGGCAGCAATCCTCACGGTTACCTTCCCACCCATTATGAAAAGGTTCAGATGCTGCTGAGTGACCGGTTCCTCGGGTTTTACATGgtaagacaa cagagtttgcaattgtgcttttgtccttggatgatataaaccattgaaatctgatttttgtaactgatgttatgatagGTTCCTGAGAGTGGACCGTGGA ACTATAGCTTCACTGGAGTGAAGCACACGTTGAGCATGAAATACAGTGTCAAACTCGGATCCCCAAAGGAGTTCTATCACGAGGAGCATCGACCCACTCA TTTCCTGGAGTTCAGCAACATGGAGGAGGCTGACATTACAGAGGGAGATCGCGAGGACACATTTACTTGAgatatactcaattttcttaccgtgtgtgtg atttagctttattttgcagtatagacttgtaagatgttgtactgtcttgtgctttactgagatagatagtaaggtccctaaatcttaaaaagatggtttg ccactataatcaaaatcttgaatgtgatgtaatcatacgtacgtgtataacggaattttggtaactaacgtcttcgatgagagaaaataaaacgacaaat ttaaactattttaagaggtttttcccatttcgaataaacgccaaatgtacaaaacatggaagaacaagcaatacaagtctcttatctccggaaagataaa acagagatcaaagaacagagtatatagacagaaggaacacgttcgagcttacaagttttttttgtagccataaatggtggcgatattcaatccaactaat gcagaaaaggcatctaactaacattattaaactcgggaagtatttacagcagttttatcatccctcctCTAACTAGATATTAGCATAAAAATGAAATTAG GGA
Border_1 (69634_RBD)
GAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATCAGTGTTTCCCGCCTCAAATACCCAGCAATTTGAGTACGAAGATCC
GCAACGCATATGAACTTCTTCAAAATGTTCTTTGGCATGATGTAGGTGTATCCGGTTTCCTGTGACAACAACAGACAGTGTTTAAGGTCGACACCTGAAA
GGCTTTTACTTAATTGACAAAGTGAATTGGATTCTAACCTTTATGTCATCTGAGTTCACATATATGTGATTGACTCTAAGGTAAAGATTAGTGGCTGATA
TTGCACGTACACGCCAATCTGTCTTGGAACCGAATGCAGATTGCTCGTAAGGGCTTGTGGTGGTGACAATGAGCTCATCACCATGAACATTTGTAGTTCT
TGTTGTGACTGCAGTAAGCTGGCTGGCTTCCTTTGCCTGCAAATAGGATATAGATTTACAGTGAACAAAGAATAATAGTCACAGTCCACTCTCACAATGT
TTGTGTTTGTTAGAAAA
| Start of BLAST Alignment: | NT 8742 / Exon 22 of 24 |
| First 15 bp Perfect Match: | NT 8742 / Exon 22 of 24 |
BLAST Details: Query Sequence: 69634_RBD Length: (517 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g80070 68414.t08552 splicing factor, putative strong s... 2235 2.8e-95 1 At4g38780 68417.t05043 splicing factor, putative strong s... 1232 7.2e-50 1 At5g09260 68418.t00969 SNF7-related contains similarity t... 195 0.59 1 At1g59820 68414.t06169 haloacid dehalogenase-like hydrola... 180 0.997 1 >At1g80070 68414.t08552 splicing factor, putative strong similarity to splicing factor Prp8 [Homo sapiens] GI:3661610; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family Length = 9760 Minus Strand HSPs: Score = 2235 (341.4 bits), Expect = 2.8e-95, P = 2.8e-95 Identities = 447/447 (100%), Positives = 447/447 (100%), Strand = Minus / Plus Query: 517 TTTTCTAACAAACACAAACATTGTGAGAGTGGACTGTGACTATTATTCTTTGTTCACTGT 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8296 TTTTCTAACAAACACAAACATTGTGAGAGTGGACTGTGACTATTATTCTTTGTTCACTGT 8355 Query: 457 AAATCTATATCCTATTTGCAGGCAAAGGAAGCCAGCCAGCTTACTGCAGTCACAACAAGA 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8356 AAATCTATATCCTATTTGCAGGCAAAGGAAGCCAGCCAGCTTACTGCAGTCACAACAAGA 8415 Query: 397 ACTACAAATGTTCATGGTGATGAGCTCATTGTCACCACCACAAGCCCTTACGAGCAATCT 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8416 ACTACAAATGTTCATGGTGATGAGCTCATTGTCACCACCACAAGCCCTTACGAGCAATCT 8475 Query: 337 GCATTCGGTTCCAAGACAGATTGGCGTGTACGTGCAATATCAGCCACTAATCTTTACCTT 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8476 GCATTCGGTTCCAAGACAGATTGGCGTGTACGTGCAATATCAGCCACTAATCTTTACCTT 8535 Query: 277 AGAGTCAATCACATATATGTGAACTCAGATGACATAAAGGTTAGAATCCAATTCACTTTG 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8536 AGAGTCAATCACATATATGTGAACTCAGATGACATAAAGGTTAGAATCCAATTCACTTTG 8595 Query: 217 TCAATTAAGTAAAAGCCTTTCAGGTGTCGACCTTAAACACTGTCTGTTGTTGTCACAGGA 158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8596 TCAATTAAGTAAAAGCCTTTCAGGTGTCGACCTTAAACACTGTCTGTTGTTGTCACAGGA 8655 Query: 157 AACCGGATACACCTACATCATGCCAAAGAACATTTTGAAGAAGTTCATATGCGTTGCGGA 98 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8656 AACCGGATACACCTACATCATGCCAAAGAACATTTTGAAGAAGTTCATATGCGTTGCGGA 8715 Query: 97 TCTTCGTACTCAAATTGCTGGGTATTT 71 ||||||||||||||||||||||||||| Sbjct: 8716 TCTTCGTACTCAAATTGCTGGGTATTT 8742 >At4g38780 68417.t05043 splicing factor, putative strong similarity to splicing factor Prp8 [Homo sapiens] GI:3661610; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family Length = 9653 Minus Strand HSPs: Score = 1232 (190.9 bits), Expect = 7.2e-50, P = 7.2e-50 Identities = 370/490 (75%), Positives = 370/490 (75%), Strand = Minus / Plus
Border_2 (69634_LBU)
AATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATAATCCCCGGATAATCCCCAGGTGAAGGAGATCCGTTGTGTTGTG
ATGGTGCCACAGTGGGGAAATCATCAGCTAGTTCACCTGCCGTCATCTCTTCCTGAGCATGATTTCCTAAATGATCTTGAGCCCTTGGGATGGTTGCACA
CACAGCCTAACGAGCTGCCTCAGCTATCACCACAGGTATATATATATATATATTTATCTTTACCTTCTGTTAACCTCATTGCTAACTGATCTTTTCTTTG
ATAGGATGTAACCTCTCATTCACGTATTCTGGAGAACAACA
| Start of BLAST Alignment: | NT 8742 / Exon 22 of 24 |
| First 15 bp Perfect Match: | NT 8760 / Exon 22 of 24 |
BLAST Details: Query Sequence: 69634_LBU Length: (341 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g80070 68414.t08552 splicing factor, putative strong s... 1295 1.0e-52 1 At4g38780 68417.t05043 splicing factor, putative strong s... 792 5.9e-30 1 >At1g80070 68414.t08552 splicing factor, putative strong similarity to splicing factor Prp8 [Homo sapiens] GI:3661610; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family Length = 9760 Plus Strand HSPs: Score = 1295 (200.4 bits), Expect = 1.0e-52, P = 1.0e-52 Identities = 273/296 (92%), Positives = 273/296 (92%), Strand = Plus / Plus Query: 48 ATGTGTTATAA-TCCCC-GGATAATCCCCAGGTGAAGGAGATCCGTTGTGTTGTGATGGT 105 || || ||| | ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 8743 ATATGGTATTAGTCCCCCGGATAATCCCCAGGTGAAGGAGATCCGTTGTGTTGTGATGGT 8802 Query: 106 GCCACAGTGGGGAAATCATCAGCTAGTTCACCTGCCGTCATCTCTTCCTGAGCATGATTT 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8803 GCCACAGTGGGGAAATCATCAGCTAGTTCACCTGCCGTCATCTCTTCCTGAGCATGATTT 8862 Query: 166 CCTAAATGATCTTGAGCCCTTGGGATGGTTGCACACACAGCCTAACGAGCTGCCTCAGCT 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8863 CCTAAATGATCTTGAGCCCTTGGGATGGTTGCACACACAGCCTAACGAGCTGCCTCAGCT 8922 Query: 226 ATCACCACAGGNNNNNNNNNNNNNNNNNTTATCTTTACCTTCTGTTAACCTCATTGCTAA 285 ||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 8923 ATCACCACAGGTATATATATATATATATTTATCTTTACCTTCTGTTAACCTCATTGCTAA 8982 Query: 286 CTGATCTTTTCTTTGATAGGATGTAACCTCTCATTCACGTATTCTGGAGAACAACA 341 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 8983 CTGATCTTTTCTTTGATAGGATGTAACCTCTCATTCCCGTATTCTGGAGAACAACA 9038 >At4g38780 68417.t05043 splicing factor, putative strong similarity to splicing factor Prp8 [Homo sapiens] GI:3661610; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family Length = 9653 Plus Strand HSPs: Score = 792 (124.9 bits), Expect = 5.9e-30, P = 5.9e-30 Identities = 224/301 (74%), Positives = 224/301 (74%), Strand = Plus / Plus