At5g61410 SYNGENTA 69756
Genomic Sequence (from TAIR)
ttgtaaaaattataaatgacctaaaatttttttttttattaattaactttttatttaaacgacaatttatttagaaattatatgttttgtatcactagta aaaatagatttattattttgcaaaattagcatattcccacaaatgtacaagacccgtcatcaaaagagagcca◄accgtttgagatagcgataagccgct gcattggatcatccgaacaaggaagacgttacccacgagaccg◄taatcacacgtggcggattctcagatattctctctttttcttctttacccggaaaa ataaagtttctgttcttcttttttcttctctgggtttgagaattggtgtaagagaaacgattgaggttttctcttattatctaaacccaccaagtctttc aggattttagccagagaagcttgagtctttgattagggacATGTCAACCTCCGCCGCTTCCTTGTGTTGTTCATCAACCCAGGTCAATGGGTTTGGTCTT AGGCCTGAAAGGTCGCTTCTTTACCAACCCACTTCCTTTTCTTTCTC►CAGgtaactcaataaccatgattttgttctagttgct►acgattgctcaggg ataggtttgtttggcatccttaaattgaaattatgtggttattgaagattacttgaatcgttatataaatgaagtatctttcatgtctttgtggatattg cttattgttaagtctctgcagtaatatagatgttgctcagggagagcttatgcttatgatttgtcacttgataaagattcaatctgcattaacggttatc tttaagttacactttggtatgtgaactttttgcagAAGGAGAACTCATGGAATTGTCAAGGCCTCATCTCGGGTTGATAGGTTTTCGAAAAGTGATATCA TTGTTTCTCCCTCTATTCTCTCGGCTAATTTCGCCAAATTAGGCGAGCAGgtaggtttttgttgctctcctctttggtttcttgtgtgtttgtttctcca tttcactatttccggcttctttcagGTAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTCATGGACGGTCGTTTTGTTCCCAACATT ACTATCGGACCTCTCGTGGTTGATGCTTTGCGCCCTGTGACAGATCTTCCTTTGGATGTTCATCTGgtaaagactagcttcttttcttatctttttctat atatggtttcttgatgtttgaagtcacatttctagttaataaagattctctaaaatcagATGATAGTGGAACCCGAGCAGAGAGTACCGGATTTCATCAA AGCAGGTGCAGATATTGTCAGTGTACATTGTGAACAGCAATCCACCATCCATTTGCATCGTACCGTCAATCAAgtactgatattttcatgcttccacttt ttaaaatttccttctggtggagtatataatcttaccttgtgctgctacaatggtgtttagATAAAAAGCTTAGGGGCTAAAGCTGGAGTTGTTCTAAACC CTGGAACCCCATTGAGTGCAATAGAATATGTCTTGGATAgtgagttttttttccttaacattgctctgtcattggcaagagatgattaagattgttctca ttggaatatcgattgtttctgatatcagTGGTGGATCTGGTCTTGATCATGTCGGTCAACCCTGGTTTTGGTGGACAGAGCTTTATTGAAAGCCAAGTAA AGAAAATCTCGGACTTGAGGAAAATGTGTGCAGAGAAGgtatcaatcgagtaacttttctctccgagtgaaagcctcttctcttctcaaaacattgtatt gttttttctttagGGAGTAAACCCATGGATTGAAGTTGATGGTGGTGTCACTCCAGCGAATGCGTACAAGgtaaagctcagatactcttcctagtttcta tcttcaactcacattttactgctgtagatatttctgtgccttagagatctcgcgatattaaatcttttgtgagtgtaatagGTTATTGAGGCTGGAGCAA ATGCTCTAGTGGCTGGATCAGCTGTATTTGGAGCTAAGGACTACGCAGAAGgtatagagataaatccgatgtttcgtttactttctgagcttagccagta ggaaaatataacgttgctctgtttgtttgttgaaaaatctgcagCTATAAAAGGAATTAAGGCCAGCAAACGACCAGCAGCTGTAGCTGTGTAAtgtgaa gcaacagcaagcgaaaagactctgttaaacttaggttaatgacttcgccatttctaaatactcatggttgtatctatatactctgcttgcagtacacaaa cttggatcttgaaaacgaaaattcacatatttgacctgtttctttctttttttgatgagcaaatcctgtttctgggatttatctgtggtttgatctgact tgtagtaacttttatttcaggaacagttaaaaagtgaatgacgatcaccagaagtcccagatgttgtcgttgtgtctccattcgccataacattcacaag aatcaaactcaatatcttcaaagtaggctcctctatactattctgtaccattgtcttgtaaattgaggatatgcagattccatacattttgcaatgaaac actgtgataagaaatatgttgttacatatgtgtttttgacttataataaagcatttcatttgtcttgcgactcttgcccaaaaacccagagataatcact ttgc
Border_1 (69756_Rescue_U)
CCATGAGCCATCTTCTTTGATCTATTCTCTATTTAATAAAATGCTATGAAGTACAAACAAGTATTGAATAAATGAGATTTTTATTTTTATGAGGTGTTTG
TTGCTTTGTGCTTAACCCACTCTTCTTATTTCTTAATCAATCTCGTTAGTCCTCGTGAACTATGTGCCTAATCCTATGGATCATGGGCCTTCTTTTTTCA
GTATGGCCCCATGATATAAAAGCATCATGTAAATAGATTACGAAATCTATCAAATGGGACTAAATTTGGTATTCTGTTTTTTTCTATAAAATGACCTAAA
ACATTTTTTGTATATATAATTGGTTGACAAAATTATAAAATTTAAAACGATGAGTTTTTCATGTTAATTAAAATTTTCTATCAATTGTTTTAGTCATACA
TCTCAAATTGAATCTTGATTTTAGTATATACATTCCTATTATTTTTTATTTATCAAATATTTTGTAAAAATTATAAATGACCTAAAATTTTTTTTTTTAT
TAATTAACTTTTTATTTAAACCGACAATTTATTTAGAAATTATATGTTTGGTATCACTAGAAAAAATAGATTTATTATTTKGCAAAATTAGCATATTCCC
NCAAAGGTCCAAGACCCGTCATCAAAAGAGAGCCANCCGTTGGAGATAGCGANAAGCCGNTGCNTNGGATCATCCGANCANGGANGACGTTCCCCACGAG
ACCG
| Start of BLAST Alignment: | < 196 / 5’ UTR |
| First 15 bp Perfect Match: | < 265 / 5’ UTR |
| Reverse Complement |
BLAST Details: Query Sequence: 69756_Rescue_U Length: (704 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N MFB13 67899 3307 3.3e-143 1 MOK9 67709 360 2.6e-08 1 T22H22 51037 354 5.8e-08 1 MIK22 67714 351 8.6e-08 1 MFB13 67899 Length = 90,376 Minus Strand HSPs: Score = 3307 (502.2 bits), Expect = 3.3e-143, P = 3.3e-143 Identities = 676/704 (96%), Positives = 677/704 (96%), Strand = Minus / Plus Query: 704 CGGTCTCGTGGGGAACGTCNTCCNTGNTCGGATGATCCNANGCANCGGCTTNTCGCTATC 645 |||||||||||| |||||| ||| || ||||||||||| | ||| |||||| |||||||| Sbjct: 56591 CGGTCTCGTGGGTAACGTCTTCCTTGTTCGGATGATCCAATGCAGCGGCTTATCGCTATC 56650 Query: 644 TCCAACGGNTGGCTCTCTTTTGATGACGGGTCTTGGACCTTTGNGGGAATATGCTAATTT 585 || ||||| |||||||||||||||||||||||||| || |||| |||||||||||||||| Sbjct: 56651 TCAAACGGTTGGCTCTCTTTTGATGACGGGTCTTGTACATTTGTGGGAATATGCTAATTT 56710 Query: 584 TGCMAAATAATAAATCTATTTTTTCTAGTGATACCAAACATATAATTTCTAAATAAATTG 525 |||+||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct: 56711 TGCAAAATAATAAATCTATTTTTACTAGTGATACAAAACATATAATTTCTAAATAAATTG 56770 Query: 524 TCGGTTTAAATAAAAAGTTAATTAATNNNNNNNNNNNTTTTAGGTCATTTATAATTTTTA 465 ||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 56771 TCG-TTTAAATAAAAAGTTAATTAATAAAAAAAAAAATTTTAGGTCATTTATAATTTTTA 56829 Query: 464 CAAAATATTTGATAAATAAAAAATAATAGGAATGTATATACTAAAATCAAGATTCAATTT 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56830 CAAAATATTTGATAAATAAAAAATAATAGGAATGTATATACTAAAATCAAGATTCAATTT 56889 Query: 404 GAGATGTATGACTAAAACAATTGATAGAAAATTTTAATTAACATGAAAAACTCATCGTTT 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56890 GAGATGTATGACTAAAACAATTGATAGAAAATTTTAATTAACATGAAAAACTCATCGTTT 56949 Query: 344 TAAATTTTATAATTTTGTCAACCAATTATATATACAAAAAATGTTTTAGGTCATTTTATA 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56950 TAAATTTTATAATTTTGTCAACCAATTATATATACAAAAAATGTTTTAGGTCATTTTATA 57009 Query: 284 GAAAAAAACAGAATACCAAATTTAGTCCCATTTGATAGATTTCGTAATCTATTTACATGA 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57010 GAAAAAAACAGAATACCAAATTTAGTCCCATTTGATAGATTTCGTAATCTATTTACATGA 57069 Query: 224 TGCTTTTATATCATGGGGCCATACTGAAAAAAGAAGGCCCATGATCCATAGGATTAGGCA 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57070 TGCTTTTATATCATGGGGCCATACTGAAAAAAGAAGGCCCATGATCCATAGGATTAGGCA 57129 Query: 164 CATAGTTCACGAGGACTAACGAGATTGATTAAGAAATAAGAAGAGTGGGTTAAGCACAAA 105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57130 CATAGTTCACGAGGACTAACGAGATTGATTAAGAAATAAGAAGAGTGGGTTAAGCACAAA 57189 Query: 104 GCAACAAACACCTCATAAAAATAAAAATCTCATTTATTCAATACTTGTTTGTACTTCATA 45 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57190 GCAACAAACACCTCATAAAAATAAAAATCTCATTTATTCAATACTTGTTTGTACTTCATA 57249 Query: 44 GCATTTTATTAAATAGAGAATAGATCAAAGAAGATGGCTCATGG 1 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57250 GCATTTTATTAAATAGAGAATAGATCAAAGAAGATGGCTCATGG 57293 MOK9 67709 Length = 97,459 Plus Strand HSPs: Score = 236 (41.5 bits), Expect = 0.049, P = 0.048 Identities = 219/388 (56%), Positives = 220/388 (56%), Strand = Plus / Plus
Border_2 (69756_LBD)
TTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAA
TTTGTTTACACCACAATATATTGAAATCATGTGCTTATTGAGCTGATTTTGTTTATCACGATTGCTCAGGGATAGGTTTGTTTGGCATCCTTAAATTGAA
ATTATGTGGTTATTGAAGATTACTTGAATCGTTATATAAATGAAGTATCTTTCATGTCTTTGTGGATATTGCTTATTGTTAAGTCTCTGCAGTAATATAG
ATGTTGCTCAGGGAGAGCTTATGCTTATGAT:TTGTCAC:TTGATAAAGATTCAATCTGCATTAACGGTTATCTTTAAGTTACACTTTGGTATGTGAACT
TTTTGCAGAAGGAGAACTCATGGAATTGTCAAGGCCTCATCTCGGGTTGATAGGTTTTCGAAAAGTGATATCATTGTTTCTCCCTCTATTCTCTCGGCTA
ATTTCGCCAAAT:TAGGCGAGCAGGTAGGTTTTTGTTGCTCTCCTCTYTGGTTTCTTGTGTGTTTGTTTCTCCATTTCACTATTTCCGGCTTCTTTCAGG
TAAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTCATGGACGGTCGTTTTGTTCCCAACATTACTATCGGACCTCTCGTGGTTGATGC
TTTGCGCCCTGTGACAGATCTTCCTTTGGATGTTCATCTGGTAAAGACTAGCTTCTTTTCTTATCTTTTTCTATATATGGTTTCTTGATGTTTGAAGTCA
CATTTCTAGTTAATAAAGATTCTCTAAAATCAGATGATAGTGGAACCCGAGCAGAGAGTACCGGATTTCATCAAAGCAGGTGCAGATATTGTCAGTGTAC
ATTGTGAACAGCAATCCACCATCCATTTGCATCGTACCGTCAATCAAGTACTGATATTTTCATGCTTCCACTTTTTAAAATTTCCTTCTGGTGGAGTATA
TAATCTTACCTTGTGCTGCTACAATGGTGTTTAGATAAAAAGCTTAGGGGCTAA
| Start of BLAST Alignment: | NT 107 / Exon 1 of 9 |
| First 15 bp Perfect Match: | NT 144 / Intron 1 of 9 |
BLAST Details: Query Sequence: 69756_LBD Length: (1051 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g61410 68418.t07122 ribulose-phosphate 3-epimerase, ch... 4492 1.4e-198 1 At3g49160 68416.t04990 pyruvate kinase family protein sim... 213 0.44 1 At3g62290 68416.t06463 ADP-ribosylation factor identical ... 198 0.94 1 At1g66400 68414.t06914 calmodulin-related protein, putati... 194 0.95 1 >At5g61410 68418.t07122 ribulose-phosphate 3-epimerase, chloroplast, putative / pentose-5-phosphate 3-epimerase, putative strong similarity to SP|Q43157 Ribulose-phosphate 3-epimerase, chloroplast precursor (EC 5.1.3.1) (Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E) {Spinacia oleracea}; contains Pfam profile PF00834: Ribulose-phosphate 3 epimerase family Length = 2500 Plus Strand HSPs: Score = 4492 (680.0 bits), Expect = 1.4e-198, P = 1.4e-198 Identities = 917/931 (98%), Positives = 918/931 (98%), Strand = Plus / Plus Query: 128 CATGTG-CTTATTGAGC-TGATTTTGTT-TA--T-C-ACGATTGCTCAGGGATAGGTTTG 180 || || || | | | | |||||||||| || | | ||||||||||||||||||||||| Sbjct: 377 CAGGTAACTCAATAACCATGATTTTGTTCTAGTTGCTACGATTGCTCAGGGATAGGTTTG 436 Query: 181 TTTGGCATCCTTAAATTGAAATTATGTGGTTATTGAAGATTACTTGAATCGTTATATAAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 TTTGGCATCCTTAAATTGAAATTATGTGGTTATTGAAGATTACTTGAATCGTTATATAAA 496 Query: 241 TGAAGTATCTTTCATGTCTTTGTGGATATTGCTTATTGTTAAGTCTCTGCAGTAATATAG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 497 TGAAGTATCTTTCATGTCTTTGTGGATATTGCTTATTGTTAAGTCTCTGCAGTAATATAG 556 Query: 301 ATGTTGCTCAGGGAGAGCTTATGCTTATGATTTGTCACTTGATAAAGATTCAATCTGCAT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 557 ATGTTGCTCAGGGAGAGCTTATGCTTATGATTTGTCACTTGATAAAGATTCAATCTGCAT 616 Query: 361 TAACGGTTATCTTTAAGTTACACTTTGGTATGTGAACTTTTTGCAGAAGGAGAACTCATG 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 617 TAACGGTTATCTTTAAGTTACACTTTGGTATGTGAACTTTTTGCAGAAGGAGAACTCATG 676 Query: 421 GAATTGTCAAGGCCTCATCTCGGGTTGATAGGTTTTCGAAAAGTGATATCATTGTTTCTC 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 677 GAATTGTCAAGGCCTCATCTCGGGTTGATAGGTTTTCGAAAAGTGATATCATTGTTTCTC 736 Query: 481 CCTCTATTCTCTCGGCTAATTTCGCCAAATTAGGCGAGCAGGTAGGTTTTTGTTGCTCTC 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 737 CCTCTATTCTCTCGGCTAATTTCGCCAAATTAGGCGAGCAGGTAGGTTTTTGTTGCTCTC 796 Query: 541 CTCTYTGGTTTCTTGTGTGTTTGTTTCTCCATTTCACTATTTCCGGCTTCTTTCAGGTAA 600 ||||+||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 797 CTCTTTGGTTTCTTGTGTGTTTGTTTCTCCATTTCACTATTTCCGGCTTCTTTCAGGTAA 856 Query: 601 AAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTCATGGACGGTCGTTTTG 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 857 AAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTCATGGACGGTCGTTTTG 916 Query: 661 TTCCCAACATTACTATCGGACCTCTCGTGGTTGATGCTTTGCGCCCTGTGACAGATCTTC 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 917 TTCCCAACATTACTATCGGACCTCTCGTGGTTGATGCTTTGCGCCCTGTGACAGATCTTC 976 Query: 721 CTTTGGATGTTCATCTGGTAAAGACTAGCTTCTTTTCTTATCTTTTTCTATATATGGTTT 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 977 CTTTGGATGTTCATCTGGTAAAGACTAGCTTCTTTTCTTATCTTTTTCTATATATGGTTT 1036 Query: 781 CTTGATGTTTGAAGTCACATTTCTAGTTAATAAAGATTCTCTAAAATCAGATGATAGTGG 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1037 CTTGATGTTTGAAGTCACATTTCTAGTTAATAAAGATTCTCTAAAATCAGATGATAGTGG 1096 Query: 841 AACCCGAGCAGAGAGTACCGGATTTCATCAAAGCAGGTGCAGATATTGTCAGTGTACATT 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1097 AACCCGAGCAGAGAGTACCGGATTTCATCAAAGCAGGTGCAGATATTGTCAGTGTACATT 1156 Query: 901 GTGAACAGCAATCCACCATCCATTTGCATCGTACCGTCAATCAAGTACTGATATTTTCAT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1157 GTGAACAGCAATCCACCATCCATTTGCATCGTACCGTCAATCAAGTACTGATATTTTCAT 1216 Query: 961 GCTTCCACTTTTTAAAATTTCCTTCTGGTGGAGTATATAATCTTACCTTGTGCTGCTACA 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1217 GCTTCCACTTTTTAAAATTTCCTTCTGGTGGAGTATATAATCTTACCTTGTGCTGCTACA 1276 Query: 1021 ATGGTGTTTAGATAAAAAGCTTAGGGGCTAA 1051 ||||||||||||||||||||||||||||||| Sbjct: 1277 ATGGTGTTTAGATAAAAAGCTTAGGGGCTAA 1307 >At3g49160 68416.t04990 pyruvate kinase family protein similar to SP|Q92122 Pyruvate kinase, muscle isozyme (EC 2.7.1.40) (Cytosolic thyroid hormone binding protein) (CTHBP) {Xenopus laevis}; contains Pfam profile PF00224: Pyruvate kinase, barrel domain Length = 2892 Plus Strand HSPs: Score = 213 (38.0 bits), Expect = 0.58, P = 0.44 Identities = 127/198 (64%), Positives = 127/198 (64%), Strand = Plus / Plus