At1g43170 SYNGENTA 70241
Genomic Sequence (from TAIR)
gtccaccagtttccaatctttgaaatacgaaacaaaaaataaataaaagtataaaacctttatctaatttgtaaaaacatttgttgggctttaggcccaa aacaaaagtcggcccatatttgagtgttcacaaaacctagatactcttactataaattcaaactagggttttaaagctcatttctctcttgcagtcctca tcgttggagcttagaagccgtcggcacaaggttcgtctttctctcatccctttcctcttcctttgcgtgaattcaccagaaaatgtatatctaccttagc gagtctgtctagtttagcgaatctaggataatctccggaagacacttttgaatcatcactgtttttgatctctgtttctttctctaattgtgttgttgta ttactgttgatgtagaagaagaagaagaagaATGTCTCACAGGAAGTTTGAGCACCCAAGACATGGTTCTCTTGGTTTCCTTCCAAGGAAGAGAGCTAAC CGTCACAGAGGAAAGGgtgagtctttttatcaaatgtagattccttgttagtgaaatgattactagggttttcataaagcttctctctttttgctcactc acaaatattgaattcttaagtagtgaatgaaatggttgatttgattcaaaaggttgttcttttattgtttgttttgcttatacgttgttgttggtttatc agTGAAGGCGTTCCCTAAGGATGACCAAACCAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAG AAACCTGGATCCAgtaagtgaacttgtgtttttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgtcaactttgtgtttttattgttg tgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGA GGTTTGAGGTCTTTGAACACTGTCTGGGCACAGCATTTGAGTGAGGAGGTCAGGAGAAGGTTCTACAAGAACTGGGCTAAGTCTAAGAAGAAGGCTTTCA CTGGGTACGCTAAGCAGTATGACAGTGAGGATGGCAAGAAGGGTATTCAGGCTCAGCTTGAGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGC TCACACTCAGgtaagtttgcttattgaatggaagtgtatatcataaactcttctgcactacgttcttactgacaattctatgtgacctctaattacagAT CAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATTGCCCAGAAGGTTGACTTTGCCTACAGTTTC TTTGAGAAGCAGATCCCAATTGAAGCTGTCTTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGGGTTATGAAGGTGTTGTTACTC GTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAGGTCTGCGTAAGGTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTG►TCCTACACTGTTG CTAGGGCTGGTCAGAACGGTTACCATCACCGTACTGAGCTTAACA◄AGAA►GATTTACAGGTTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACT GAATATGACAGgtcagtagaaatttctctgtttcgtttcttttctcctgtctggtcatgattacttctgtggtttatctgagtctgatgataatgttttg tgtatgatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTACTTGATGATTAAGGGGTGCTGT GTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTTCTCACTCAGACTTCCCGTCTTGCCTTGGAGGAGATCAAACTCAAGTTTATTGACACCG CCTCCATTTTTGGACATGGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGTGTCACGAAGTAAgagttgttttatcacaattcttctta gaaagtttcatgtttggttatctgttgctacttatctcagagatgttatcctttaaacaatgttatggagttttcttttgcttttagtttgttacttttt tggaagttaaaacgatttgcttctcaagttttgagactttgatgtgttctttatcatttatgaaaaaccaacctggagcataaaaaacaacaaagaatct gtctttggtggtgatattgaaactgcctttaatgcatttcgaattatcatttgaaaattgatacaaaaccacaattgttacattggtgcttccaagctta tcaatcttccctatgatgaaacaagcatgcccacttccacaacttaaatcacatctgctgacaccaataggcagtatcatatcataaatctatatgtcat tca
Border_1 (70241_LBD)
ATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATT:AATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAATTCAGTACA
TTAAAAACTTACGCAATGTGTTAAGCTCAGTACGGTGATGGTAACCGTTCTGACCAGCCCTAGCAACAGTGTAGGACACTCTAGCAGGATGCCACGCACC
AATACAAGCAACCTTACGCAGACCTCTGTGAGTCTTACGAGGAAGACGGGTAACACCCCAACGAGTAACAACACCTTCATAACCCTTACCCTTGGTCACA
CCAATGATATCAATCATTTCATCCTTCTGGAAGACAGCTTCAATTGGGATCTGCTTCTCAAAGAAACTGTAGGCAAAGTCAACCTTCTGGGCAATGGTAC
CACCATTGATCTGGATCTCCATCATGTGAGCCTTCTTCTGCTTYAATCCCTTCATCTTCCTGATCTGTAATTAGAGGTCACATAGAATTGWCAGTAAGAA
CGTAGTGCAGAAGAGTTTATGATATACACTTCCATTTCAATAAASCAAACTTACCTGGGTGTGAGCG:CAAAACACGGATGACAGWAGCAGTACTTCTTC
ATSKTTCTNAAGTTGAGNCTGACTACCCTTCTTGCCATCNTCACTTGCCATACTGCTTAGTNTNCCCANAGAANGTCTTCTTCTAGACTTAGNCCA
| Start of BLAST Alignment: | NT 1213 / Exon 5 of 6 (Intron 1 in 5’UTR) |
| First 15 bp Perfect Match: | NT 1213 / Exon 5 of 6 (Intron 1 in 5’UTR) |
BLAST Details: Query Sequence: 70241_LBD Length: (694 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g43170 68414.t04538 60S ribosomal protein L3 (RPL3A) i... 2646 3.9e-115 1 At1g61580 68414.t06358 60S ribosomal protein L3 (RPL3B) i... 1183 2.5e-48 1 At1g07560 68414.t00725 leucine-rich repeat protein kinase... 205 0.49 1 >At1g43170 68414.t04538 60S ribosomal protein L3 (RPL3A) identical to ribosomal protein GI:166858 from [Arabidopsis thaliana] Length = 2138 Minus Strand HSPs: Score = 2646 (403.1 bits), Expect = 3.9e-115, P = 3.9e-115 Identities = 551/578 (95%), Positives = 556/578 (96%), Strand = Minus / Plus Query: 694 TGGNCTAAGTCTA-GAAGAAGACNTTCTNTGGGNANACTAAGCAGTATGGCAAGTGANGA 636 ||| ||||||||| ||||||| | ||| |||| | |||||||||||| || |||| || Sbjct: 901 TGGGCTAAGTCTAAGAAGAAGGCTTTCACTGGGTACGCTAAGCAGTATGACA-GTGAGGA 959 Query: 635 TGGCAAGAAGGGTAGTCAGNCTCAACTTNAGAAMSATGAAGAAGTACTGCTWCTGTCATC 576 |||||||||||||| |||| |||| ||| |||| +|||||||||||| |||+|||||||| Sbjct: 960 TGGCAAGAAGGGTATTCAGGCTCAGCTTGAGAA-GATGAAGAAGTAC-GCTACTGTCATC 1017 Query: 575 CGTGTTTTGCGCTCACACCCAGGTAAGTTTGSTTTATTGAAATGGAAGTGTATATCATAA 516 ||||||||| |||||||| ||||||||||||+|| |||||| |||||||||||||||||| Sbjct: 1018 CGTGTTTTG-GCTCACACTCAGGTAAGTTTGCTT-ATTGAA-TGGAAGTGTATATCATAA 1074 Query: 515 ACTCTTCTGCACTACGTTCTTACTGWCAATTCTATGTGACCTCTAATTACAGATCAGGAA 456 |||||||||||||||||||||||||+|||||||||||||||||||||||||||||||||| Sbjct: 1075 ACTCTTCTGCACTACGTTCTTACTGACAATTCTATGTGACCTCTAATTACAGATCAGGAA 1134 Query: 455 GATGAAGGGATTRAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTAC 396 ||||||||||||+||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1135 GATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTAC 1194 Query: 395 CATTGCCCAGAAGGTTGACTTTGCCTACAGTTTCTTTGAGAAGCAGATCCCAATTGAAGC 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1195 CATTGCCCAGAAGGTTGACTTTGCCTACAGTTTCTTTGAGAAGCAGATCCCAATTGAAGC 1254 Query: 335 TGTCTTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGGGTTATGA 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1255 TGTCTTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGGGTTATGA 1314 Query: 275 AGGTGTTGTTACTCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAGGTCTGCG 216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1315 AGGTGTTGTTACTCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAGGTCTGCG 1374 Query: 215 TAAGGTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTGTCCTACACTGTTGCTAGGGC 156 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1375 TAAGGTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTGTCCTACACTGTTGCTAGGGC 1434 Query: 155 TGGTCAGAACGGTTACCATCACCGTACTGAGCTTAACA 118 |||||||||||||||||||||||||||||||||||||| Sbjct: 1435 TGGTCAGAACGGTTACCATCACCGTACTGAGCTTAACA 1472 >At1g61580 68414.t06358 60S ribosomal protein L3 (RPL3B) identical to ribosomal protein GI:806279 from [Arabidopsis thaliana] Length = 2450 Minus Strand HSPs: Score = 1183 (183.5 bits), Expect = 2.5e-48, P = 2.5e-48 Identities = 317/408 (77%), Positives = 319/408 (78%), Strand = Minus / Plus
Border_2 (70241_RBU)
ATAATTCCTGCAGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATCAGTTGATTTACAGGTTGGGTAAGGTTGGTACTG
AGGCACACACAGCCATGACTGAATATGACAGGTCAGTAGAAATTTCTCTGTTTCGTTTCTTTTCTCCTGTCTGGTCATGATTACTTCTGTGGTTTATCTG
AGTCTGATGATAATGTTTTGTGTATGATGATATAGGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTACT
TGATGATTAAGGGGTGCTGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTTCTCACTCAGACTTCCCGTCTTGCCTTGGAGGAGATCAA
ACTCAAGTTTATTGACACCGCCTCCATTTTTGGACATGGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGTGTCACGAAGTAAGAGTTG
TTTTATCACAATTCTTCTTAGAAAGTTTCATGTTTGGTTATCTGTCTGCTACTTATCTCAGAGATGTTATCCTTTAAACAATGTTATGGAGTTTTCTTTT
GCTTTTAGTTTGTTACTTTTTTGGAAGGTTAAAACGATTTGCTTCTCAAGTTTTGAGACTTTGATGTGTTCTTTATCATTTATGAAAAACCAACCTGGAG
CATAAAAAAACAACAAAGAATCTGYCTTTGGTGGTGATATTTGAAACTGCCTTTAATGCATTTCGAATTATCATTTGAAAATTGATMCAAA
| Start of BLAST Alignment: | NT 1155 / Exon 5 of 6 (Intron 1 in 5’UTR) |
| First 15 bp Perfect Match: | NT 1217 / Exon 5 of 6 (Intron 1 in 5’UTR) |
BLAST Details: Query Sequence: 70241_RBU Length: (791 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g43170 68414.t04538 60S ribosomal protein L3 (RPL3A) i... 3300 1.1e-144 1 At1g61580 68414.t06358 60S ribosomal protein L3 (RPL3B) i... 905 2.0e-35 1 At5g42445 68418.t04811 60S ribosomal protein L3 (RPL3C), ... 778 5.8e-30 1 At2g04660 68415.t00424 E3 ubiquitin ligase, putative E3, ... 188 0.997 1 >At1g43170 68414.t04538 60S ribosomal protein L3 (RPL3A) identical to ribosomal protein GI:166858 from [Arabidopsis thaliana] Length = 2138 Plus Strand HSPs: Score = 3300 (501.2 bits), Expect = 1.1e-144, P = 1.1e-144 Identities = 701/734 (95%), Positives = 702/734 (95%), Strand = Plus / Plus Query: 6 TCCTGCAGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTT-TAAACT 64 |||| || | | ||| | ||| || ||||| | ||| || | | || | | || Sbjct: 1415 TCCTACACTGTT-GCTAGGGCT-GG-TCAGAACG--GTTACCATCAC-C-GTACTGAGCT 1467 Query: 65 -ATCA-GTTGATTTACAGGTTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGA 122 | || | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1468 TAACAAGAAGATTTACAGGTTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGA 1527 Query: 123 ATATGACAGGTCAGTAGAAATTTCTCTGTTTCGTTTCTTTTCTCCTGTCTGGTCATGATT 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1528 ATATGACAGGTCAGTAGAAATTTCTCTGTTTCGTTTCTTTTCTCCTGTCTGGTCATGATT 1587 Query: 183 ACTTCTGTGGTTTATCTGAGTCTGATGATAATGTTTTGTGTATGATGATATAGGACTGAG 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1588 ACTTCTGTGGTTTATCTGAGTCTGATGATAATGTTTTGTGTATGATGATATAGGACTGAG 1647 Query: 243 AAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTACTTG 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1648 AAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTACTTG 1707 Query: 303 ATGATTAAGGGGTGCTGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTT 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1708 ATGATTAAGGGGTGCTGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTT 1767 Query: 363 CTCACTCAGACTTCCCGTCTTGCCTTGGAGGAGATCAAACTCAAGTTTATTGACACCGCC 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1768 CTCACTCAGACTTCCCGTCTTGCCTTGGAGGAGATCAAACTCAAGTTTATTGACACCGCC 1827 Query: 423 TCCATTTTTGGACATGGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1828 TCCATTTTTGGACATGGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGT 1887 Query: 483 GTCACGAAGTAAGAGTTGTTTTATCACAATTCTTCTTAGAAAGTTTCATGTTTGGTTATC 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1888 GTCACGAAGTAAGAGTTGTTTTATCACAATTCTTCTTAGAAAGTTTCATGTTTGGTTATC 1947 Query: 543 TGTCTGCTACTTATCTCAGAGATGTTATCCTTTAAACAATGTTATGGAGTTTTCTTTTGC 602 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1948 TGT-TGCTACTTATCTCAGAGATGTTATCCTTTAAACAATGTTATGGAGTTTTCTTTTGC 2006 Query: 603 TTTTAGTTTGTTACTTTTTTGGAAGGTTAAAACGATTTGCTTCTCAAGTTTTGAGACTTT 662 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 2007 TTTTAGTTTGTTACTTTTTTGGAAG-TTAAAACGATTTGCTTCTCAAGTTTTGAGACTTT 2065 Query: 663 GATGTGTTCTTTATCATTTATGAAAAACCAACCTGGAGCATAAAAAAACAACAAAGAATC 722 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2066 GATGTGTTCTTTATCATTTATGAAAAACCAACCTGGAGCATAAAAAA-CAACAAAGAATC 2124 Query: 723 TGYCTTTGGTGGTG 736 ||+||||||||||| Sbjct: 2125 TGTCTTTGGTGGTG 2138 >At1g61580 68414.t06358 60S ribosomal protein L3 (RPL3B) identical to ribosomal protein GI:806279 from [Arabidopsis thaliana] Length = 2450 Plus Strand HSPs: Score = 905 (141.8 bits), Expect = 2.0e-35, P = 2.0e-35 Identities = 383/586 (65%), Positives = 383/586 (65%), Strand = Plus / Plus