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At1g43170 SYNGENTA 70241

Genomic Sequence (from TAIR)
gtccaccagtttccaatctttgaaatacgaaacaaaaaataaataaaagtataaaacctttatctaatttgtaaaaacatttgttgggctttaggcccaa
aacaaaagtcggcccatatttgagtgttcacaaaacctagatactcttactataaattcaaactagggttttaaagctcatttctctcttgcagtcctca
tcgttggagcttagaagccgtcggcacaaggttcgtctttctctcatccctttcctcttcctttgcgtgaattcaccagaaaatgtatatctaccttagc
gagtctgtctagtttagcgaatctaggataatctccggaagacacttttgaatcatcactgtttttgatctctgtttctttctctaattgtgttgttgta
ttactgttgatgtagaagaagaagaagaagaATGTCTCACAGGAAGTTTGAGCACCCAAGACATGGTTCTCTTGGTTTCCTTCCAAGGAAGAGAGCTAAC
CGTCACAGAGGAAAGGgtgagtctttttatcaaatgtagattccttgttagtgaaatgattactagggttttcataaagcttctctctttttgctcactc
acaaatattgaattcttaagtagtgaatgaaatggttgatttgattcaaaaggttgttcttttattgtttgttttgcttatacgttgttgttggtttatc
agTGAAGGCGTTCCCTAAGGATGACCAAACCAAGCCTTGCAAGTTCACAGCTTTCATGGGTTACAAAGCTGGTATGACTCACATTGTCAGAGAAGTGGAG
AAACCTGGATCCAgtaagtgaacttgtgtttttttcattctgatttgttttgtggaggtttttgcgatttaaagtcgtcaactttgtgtttttattgttg
tgtagAGCTTCACAAGAAGGAGACATGTGAGGCTGTTACCATCATTGAGACACCTGCTATGGTGGTTGTTGGAGTTGTTGCCTATGTGAAGACTCCTAGA
GGTTTGAGGTCTTTGAACACTGTCTGGGCACAGCATTTGAGTGAGGAGGTCAGGAGAAGGTTCTACAAGAACTGGGCTAAGTCTAAGAAGAAGGCTTTCA
CTGGGTACGCTAAGCAGTATGACAGTGAGGATGGCAAGAAGGGTATTCAGGCTCAGCTTGAGAAGATGAAGAAGTACGCTACTGTCATCCGTGTTTTGGC
TCACACTCAGgtaagtttgcttattgaatggaagtgtatatcataaactcttctgcactacgttcttactgacaattctatgtgacctctaattacagAT
CAGGAAGATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTACCATTGCCCAGAAGGTTGACTTTGCCTACAGTTTC
TTTGAGAAGCAGATCCCAATTGAAGCTGTCTTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGGGTTATGAAGGTGTTGTTACTC
GTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAGGTCTGCGTAAGGTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTGTCCTACACTGTTG
CTAGGGCTGGTCAGAACGGTTACCATCACCGTACTGAGCTTAACAAGAAGATTTACAGGTTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACT
GAATATGACAGgtcagtagaaatttctctgtttcgtttcttttctcctgtctggtcatgattacttctgtggtttatctgagtctgatgataatgttttg
tgtatgatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTACTTGATGATTAAGGGGTGCTGT
GTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTTCTCACTCAGACTTCCCGTCTTGCCTTGGAGGAGATCAAACTCAAGTTTATTGACACCG
CCTCCATTTTTGGACATGGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGTGTCACGAAGTAAgagttgttttatcacaattcttctta
gaaagtttcatgtttggttatctgttgctacttatctcagagatgttatcctttaaacaatgttatggagttttcttttgcttttagtttgttacttttt
tggaagttaaaacgatttgcttctcaagttttgagactttgatgtgttctttatcatttatgaaaaaccaacctggagcataaaaaacaacaaagaatct
gtctttggtggtgatattgaaactgcctttaatgcatttcgaattatcatttgaaaattgatacaaaaccacaattgttacattggtgcttccaagctta
tcaatcttccctatgatgaaacaagcatgcccacttccacaacttaaatcacatctgctgacaccaataggcagtatcatatcataaatctatatgtcat
tca

Border_1 (70241_LBD)

ATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATT:AATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAATTCAGTACA
TTAAAAACTTACGCAATGTGTTAAGCTCAGTACGGTGATGGTAACCGTTCTGACCAGCCCTAGCAACAGTGTAGGACACTCTAGCAGGATGCCACGCACC
AATACAAGCAACCTTACGCAGACCTCTGTGAGTCTTACGAGGAAGACGGGTAACACCCCAACGAGTAACAACACCTTCATAACCCTTACCCTTGGTCACA
CCAATGATATCAATCATTTCATCCTTCTGGAAGACAGCTTCAATTGGGATCTGCTTCTCAAAGAAACTGTAGGCAAAGTCAACCTTCTGGGCAATGGTAC
CACCATTGATCTGGATCTCCATCATGTGAGCCTTCTTCTGCTTYAATCCCTTCATCTTCCTGATCTGTAATTAGAGGTCACATAGAATTGWCAGTAAGAA
CGTAGTGCAGAAGAGTTTATGATATACACTTCCATTTCAATAAASCAAACTTACCTGGGTGTGAGCG:CAAAACACGGATGACAGWAGCAGTACTTCTTC
ATSKTTCTNAAGTTGAGNCTGACTACCCTTCTTGCCATCNTCACTTGCCATACTGCTTAGTNTNCCCANAGAANGTCTTCTTCTAGACTTAGNCCA

Start of BLAST Alignment:NT 1213 / Exon 5 of 6 (Intron 1 in 5’UTR)
First 15 bp Perfect Match:NT 1213 / Exon 5 of 6 (Intron 1 in 5’UTR)
BLAST Details:
Query Sequence: 70241_LBD 
Length: (694 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g43170 68414.t04538 60S ribosomal protein L3 (RPL3A) i...  2646  3.9e-115  1
At1g61580 68414.t06358 60S ribosomal protein L3 (RPL3B) i...  1183  2.5e-48   1
At1g07560 68414.t00725 leucine-rich repeat protein kinase...   205  0.49      1


>At1g43170 68414.t04538 60S ribosomal protein L3 (RPL3A) identical to ribosomal
           protein GI:166858 from [Arabidopsis thaliana]
        Length = 2138

  Minus Strand HSPs:

 Score = 2646 (403.1 bits), Expect = 3.9e-115, P = 3.9e-115
 Identities = 551/578 (95%), Positives = 556/578 (96%), Strand = Minus / Plus

Query:   694 TGGNCTAAGTCTA-GAAGAAGACNTTCTNTGGGNANACTAAGCAGTATGGCAAGTGANGA 636
             ||| ||||||||| ||||||| | |||  |||| |  |||||||||||| || |||| ||
Sbjct:   901 TGGGCTAAGTCTAAGAAGAAGGCTTTCACTGGGTACGCTAAGCAGTATGACA-GTGAGGA 959

Query:   635 TGGCAAGAAGGGTAGTCAGNCTCAACTTNAGAAMSATGAAGAAGTACTGCTWCTGTCATC 576
             |||||||||||||| |||| |||| ||| |||| +|||||||||||| |||+||||||||
Sbjct:   960 TGGCAAGAAGGGTATTCAGGCTCAGCTTGAGAA-GATGAAGAAGTAC-GCTACTGTCATC 1017

Query:   575 CGTGTTTTGCGCTCACACCCAGGTAAGTTTGSTTTATTGAAATGGAAGTGTATATCATAA 516
             ||||||||| |||||||| ||||||||||||+|| |||||| ||||||||||||||||||
Sbjct:  1018 CGTGTTTTG-GCTCACACTCAGGTAAGTTTGCTT-ATTGAA-TGGAAGTGTATATCATAA 1074

Query:   515 ACTCTTCTGCACTACGTTCTTACTGWCAATTCTATGTGACCTCTAATTACAGATCAGGAA 456
             |||||||||||||||||||||||||+||||||||||||||||||||||||||||||||||
Sbjct:  1075 ACTCTTCTGCACTACGTTCTTACTGACAATTCTATGTGACCTCTAATTACAGATCAGGAA 1134

Query:   455 GATGAAGGGATTRAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTAC 396
             ||||||||||||+|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1135 GATGAAGGGATTGAAGCAGAAGAAGGCTCACATGATGGAGATCCAGATCAATGGTGGTAC 1194

Query:   395 CATTGCCCAGAAGGTTGACTTTGCCTACAGTTTCTTTGAGAAGCAGATCCCAATTGAAGC 336
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1195 CATTGCCCAGAAGGTTGACTTTGCCTACAGTTTCTTTGAGAAGCAGATCCCAATTGAAGC 1254

Query:   335 TGTCTTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGGGTTATGA 276
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1255 TGTCTTCCAGAAGGATGAAATGATTGATATCATTGGTGTGACCAAGGGTAAGGGTTATGA 1314

Query:   275 AGGTGTTGTTACTCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAGGTCTGCG 216
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1315 AGGTGTTGTTACTCGTTGGGGTGTTACCCGTCTTCCTCGTAAGACTCACAGAGGTCTGCG 1374

Query:   215 TAAGGTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTGTCCTACACTGTTGCTAGGGC 156
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1375 TAAGGTTGCTTGTATTGGTGCGTGGCATCCTGCTAGAGTGTCCTACACTGTTGCTAGGGC 1434

Query:   155 TGGTCAGAACGGTTACCATCACCGTACTGAGCTTAACA 118
             ||||||||||||||||||||||||||||||||||||||
Sbjct:  1435 TGGTCAGAACGGTTACCATCACCGTACTGAGCTTAACA 1472


>At1g61580 68414.t06358 60S ribosomal protein L3 (RPL3B) identical to ribosomal
           protein GI:806279 from [Arabidopsis thaliana]
        Length = 2450

  Minus Strand HSPs:

 Score = 1183 (183.5 bits), Expect = 2.5e-48, P = 2.5e-48
 Identities = 317/408 (77%), Positives = 319/408 (78%), Strand = Minus / Plus


Border_2 (70241_RBU)

ATAATTCCTGCAGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATCAGTTGATTTACAGGTTGGGTAAGGTTGGTACTG
AGGCACACACAGCCATGACTGAATATGACAGGTCAGTAGAAATTTCTCTGTTTCGTTTCTTTTCTCCTGTCTGGTCATGATTACTTCTGTGGTTTATCTG
AGTCTGATGATAATGTTTTGTGTATGATGATATAGGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTACT
TGATGATTAAGGGGTGCTGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTTCTCACTCAGACTTCCCGTCTTGCCTTGGAGGAGATCAA
ACTCAAGTTTATTGACACCGCCTCCATTTTTGGACATGGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGTGTCACGAAGTAAGAGTTG
TTTTATCACAATTCTTCTTAGAAAGTTTCATGTTTGGTTATCTGTCTGCTACTTATCTCAGAGATGTTATCCTTTAAACAATGTTATGGAGTTTTCTTTT
GCTTTTAGTTTGTTACTTTTTTGGAAGGTTAAAACGATTTGCTTCTCAAGTTTTGAGACTTTGATGTGTTCTTTATCATTTATGAAAAACCAACCTGGAG
CATAAAAAAACAACAAAGAATCTGYCTTTGGTGGTGATATTTGAAACTGCCTTTAATGCATTTCGAATTATCATTTGAAAATTGATMCAAA

Start of BLAST Alignment:NT 1155 / Exon 5 of 6 (Intron 1 in 5’UTR)
First 15 bp Perfect Match:NT 1217 / Exon 5 of 6 (Intron 1 in 5’UTR)
BLAST Details:
Query Sequence: 70241_RBU 
Length: (791 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g43170 68414.t04538 60S ribosomal protein L3 (RPL3A) i...  3300  1.1e-144  1
At1g61580 68414.t06358 60S ribosomal protein L3 (RPL3B) i...   905  2.0e-35   1
At5g42445 68418.t04811 60S ribosomal protein L3 (RPL3C), ...   778  5.8e-30   1
At2g04660 68415.t00424 E3 ubiquitin ligase, putative E3, ...   188  0.997     1


>At1g43170 68414.t04538 60S ribosomal protein L3 (RPL3A) identical to ribosomal
           protein GI:166858 from [Arabidopsis thaliana]
        Length = 2138

  Plus Strand HSPs:

 Score = 3300 (501.2 bits), Expect = 1.1e-144, P = 1.1e-144
 Identities = 701/734 (95%), Positives = 702/734 (95%), Strand = Plus / Plus

Query:     6 TCCTGCAGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTT-TAAACT 64
             |||| ||  | | ||| | ||| || |||||  |  ||| ||  |   | ||  | | ||
Sbjct:  1415 TCCTACACTGTT-GCTAGGGCT-GG-TCAGAACG--GTTACCATCAC-C-GTACTGAGCT 1467

Query:    65 -ATCA-GTTGATTTACAGGTTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGA 122
              | || |  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1468 TAACAAGAAGATTTACAGGTTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGA 1527

Query:   123 ATATGACAGGTCAGTAGAAATTTCTCTGTTTCGTTTCTTTTCTCCTGTCTGGTCATGATT 182
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1528 ATATGACAGGTCAGTAGAAATTTCTCTGTTTCGTTTCTTTTCTCCTGTCTGGTCATGATT 1587

Query:   183 ACTTCTGTGGTTTATCTGAGTCTGATGATAATGTTTTGTGTATGATGATATAGGACTGAG 242
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1588 ACTTCTGTGGTTTATCTGAGTCTGATGATAATGTTTTGTGTATGATGATATAGGACTGAG 1647

Query:   243 AAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTACTTG 302
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1648 AAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGTGAAGGATGACTACTTG 1707

Query:   303 ATGATTAAGGGGTGCTGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTT 362
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1708 ATGATTAAGGGGTGCTGTGTTGGTCCCAAGAAGAGAGTTGTAACTCTCAGACAGTCACTT 1767

Query:   363 CTCACTCAGACTTCCCGTCTTGCCTTGGAGGAGATCAAACTCAAGTTTATTGACACCGCC 422
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1768 CTCACTCAGACTTCCCGTCTTGCCTTGGAGGAGATCAAACTCAAGTTTATTGACACCGCC 1827

Query:   423 TCCATTTTTGGACATGGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGT 482
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1828 TCCATTTTTGGACATGGTCGCTTCCAGACCTCCCTTGAGAAGATGAGGTTTTACAACCGT 1887

Query:   483 GTCACGAAGTAAGAGTTGTTTTATCACAATTCTTCTTAGAAAGTTTCATGTTTGGTTATC 542
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1888 GTCACGAAGTAAGAGTTGTTTTATCACAATTCTTCTTAGAAAGTTTCATGTTTGGTTATC 1947

Query:   543 TGTCTGCTACTTATCTCAGAGATGTTATCCTTTAAACAATGTTATGGAGTTTTCTTTTGC 602
             ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1948 TGT-TGCTACTTATCTCAGAGATGTTATCCTTTAAACAATGTTATGGAGTTTTCTTTTGC 2006

Query:   603 TTTTAGTTTGTTACTTTTTTGGAAGGTTAAAACGATTTGCTTCTCAAGTTTTGAGACTTT 662
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct:  2007 TTTTAGTTTGTTACTTTTTTGGAAG-TTAAAACGATTTGCTTCTCAAGTTTTGAGACTTT 2065

Query:   663 GATGTGTTCTTTATCATTTATGAAAAACCAACCTGGAGCATAAAAAAACAACAAAGAATC 722
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct:  2066 GATGTGTTCTTTATCATTTATGAAAAACCAACCTGGAGCATAAAAAA-CAACAAAGAATC 2124

Query:   723 TGYCTTTGGTGGTG 736
             ||+|||||||||||
Sbjct:  2125 TGTCTTTGGTGGTG 2138


>At1g61580 68414.t06358 60S ribosomal protein L3 (RPL3B) identical to ribosomal
           protein GI:806279 from [Arabidopsis thaliana]
        Length = 2450

  Plus Strand HSPs:

 Score = 905 (141.8 bits), Expect = 2.0e-35, P = 2.0e-35
 Identities = 383/586 (65%), Positives = 383/586 (65%), Strand = Plus / Plus