At5g12840 SYNGENTA 70913
Genomic Sequence (from TAIR)
acttaatatcaaaaaccac►aattctggcaaaaaagaaaaatccccaaaatctagggt◄tttcttctcg►cccaatttcacttttcttctacgaaattct ccattcctgccggctgtcgggttttctgaat◄cgattctccttcaccaacttcttctctggttctgttcgattctgattttttttcaaggtcaatttttt cttctctttaaactctgcaaaatcgtgatcgattaaattcacctcagggttttttgatttctgaaagaagttaatcttcttcgaaggcgattgcaaaaga gtgctctgctgtgaatttccactggtatgttcaattttttctgtttttgaaattttgtttgctagaattcgtgaagggattgaaaaaattgatgcaggtg gctaaagaatctcttgaatattacgagcttatgtaggtttagagtgtaaattcgagacatgtgagattttggtgctttctcatatttttgcatgcttctg cattgcttcatagccctaaaattgctctcttttttttgtagttggagtctgtatctttttcacggttttagtgatgaatttttttttttgattggatttt gaattggttactgaacatgtgttgacttgattatgtagagATGCAATCAAAACCGGGAAGAGAAAACGAAGAGGAAGTCAATAATCACCATGCTGTTCAG CAGCCGATGATGTATGCAGAGCCCTGGTGGAAAAACAACTCCTTTGGTGTTGTACCTCAAGCGAGACCTTCTGGAATTCCATCAAATTCCTCTTCTTTGG ATTGCCCCAATGGTTCCGAGTCAAACGATGTTCATTCAGCATCTGAAGACGGTGCGTTGAATGGTGAAAACGATGGCACTTGGAAGGATTCACAAGCTGC AACTTCCTCTCGTTCAGgtttgagttcttggtctttaggcctacttggtgtattgttcatattcatcatttctgcagtactgttttactggatgacctag tgatcactgtcgaaagtgatgttgttccacgttcggaatgttgcaacttggtgaagagttgttcctcaagcaggcagggaaattaaatgggcatttgtgt gattcggcactatagggcgtgtcaagttcatgaatctggtccttgaaatatacttgcattgtaattgtagggtttcatagttctatccatgccaaggaga ttctgtctcgttgatatgtgcattgtgatttctttattttgtttgtaatggtgtctttcttcaacttcagTAGATAATCACGGAATGGAAGGAAATGACC CAGCGCTCTCTATCCGTAACATGCATGATCAGCCACTTGTACAACCACCAGAGCTTGTTGGACACTATATCgtatgtggtttcctctcattccttaatat atatatatatatgctttatgagttcttgagctgttaaattgacttcttattggtccctcaaaaggatttatcttgtataacgcccttttcatatgtatga taaactcaaaacttccttacagGCTTGTGTCCCAAACCCATATCAGGATCCATATTATGGGGGATTGATGGGAGCATATGGTCATCAGCAATTGgtatct tgtcgaaacctctttcaatctctacaatagttccatatggtgcagtgtttatttgatgtatgtgcgcttttgccactaagtacccgtttgtggtgatttt atttactgttggaatgtgtctgggttcagcaatagtcagtgagatgcttttaaagttcatttctgaaataactgagaatccaaagttatatctgaaatta tcgagaacaactaatggggattcttggggtcttataagttatatgtaaagttttcgatgatctgagtctatttgttgcatttattttgttcattggttta aacagGGTTTTCGTCCATATCTTGGAATGCCTCGTGAAAGAACAGCTCTGCCACTTGACATGGCACAAGAGCCCGTTTATGTGAATGCAAAGCAGTACGA GGGAATTCTAAGGCGAAGAAAAGCACGTGCCAAGGCAGAGCTAGAGAGGAAAGTCATCCGGGACAGAAAGgtatttttttctcatttatgaaaattgtac ttgattggtgtcctggtaatctaaggatggtgtagagtccataatagaagtggacccatgctatatgaaggattgataatgagcattaagaatttgcaag tttggtttgtcgctcggtaaacttgtattgactatgtttgaaatgcgacagCCATATCTTCACGAGTCAAGACACAAGCATGCAATGAGAAGGGCACGAG CGAGTGGAGGCCGGTTTGCGAAGAAAAGTGAGGTAGAAGCGGGAGAGGATGCAGGAGGGAGAGACAGAGAAAGGGGTTCAGCAACCAACTCATCAGGCTC TGAACAAGTTGAGACAGACTCTAATGAGACCCTGAATTCTTCTGGTGCACCATAAtaaaaaaagccaaagctctgagaggagagagagacacacactttg gctaatataatcattgcctcaaaccggcaaatcattcttggctttttcgtttttgtgtttgctagttgttcttgtcagagtctcatattgtgtgggttta acagttatgatgaatgtacaaagagcgagttatgttaggtgttagattttggagacaagagactaaggaatagcaagtaggtcttgtttttattctttga ccttttttttctcttttgcaaaattgaaaaatacgtttgcttaatcgtttgcctttctgaccacaaagtgttaacaaggctataacaatgcttcagattt gtagtcaaattctctgttttcgccaacttaaacattatttgaccggaggagagtgattagaaagtagaagaaacctattaaacattatgttttgcaaaga aaaaaaaaacagcttgcaataagttgcatagtttgctcatggaagtttcaagtttgcatataaaccagatttgaaaaggacagtgaaaaaaaagaagttg ttaa
Border_1 (70913_LB2U)
AATCNATTCATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGTGTACATTAAATGCTGATATACACCCTAGATTT
TGGGGATTTTTCTTTTTTGCCAGAATTGTGGTTTTTGATATTAAGNAATTTATTGAAAAATCGAAATAGAGTAAGTTATATGATGATGATGAATTTACAC
AAAAGACCGAGATTTGATAAGATCACNTTACGAAAGTGAAAAATCTTTTTGCCACGTGGCTGCTCTATGAAAGATGCCAGCGCGCGCAGATCTGGGATCT
TCTCCGGCTGACGTTATCATAGGTTCATTTTTAATTTGTTTTGTTTTTTCTTATATACTAGAAAGAAATTAAATTTCTTTTAAAAAACAGGAGAAATTTG
GGTCCAAGNGACACGCAAGTGATGGGCTGGGACGAGGGGACACCTGTAAAATGTGGGGACCCTATTGGCAAAAACAATTAAAAGATTTTTTTTTGTTAAA
NAAATAAGTTAATTAGTTCAATATTGGTAATTTNTTTNTTTNACAAAATAANATAAAGNGTTTNCCCTTCATNAAAAAAATATAGTTGTTTTAAGAAAAT
AATAATANTACTCCANCTGAAAAAANTNTTTTCCATAAATAATNGGNGGTAAAAAAAAAACCTTGGAAAGGTTTTTAAAANTTTTTTAAAGGGNTNCNAA
AGGGAAAANNCCGTNCGAANGGTTAAAAATTNGGGGGTTNTCNCCGGAATTAAAGGNCNCCTNACNNCNNA
| Start of BLAST Alignment: | < 508 / Exon 1 of 7 (Intron 1,2 in 5’ UTR) |
| First 15 bp Perfect Match: | < 579 / Exon 1 of 7 (Intron 1,2 in 5’ UTR) |
BLAST Details: Query Sequence: 70913_LB2U Length: (771 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g12840 68418.t01338 CCAAT-binding transcription factor... 252 0.0037 1 At3g46480 68416.t04683 oxidoreductase, 2OG-Fe(II) oxygena... 185 0.997 1 >At5g12840 68418.t01338 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein contains Pfam profile: PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B Length = 2898 Minus Strand HSPs: Score = 252 (43.9 bits), Expect = 0.0037, P = 0.0037 Identities = 84/120 (70%), Positives = 84/120 (70%), Strand = Minus / Plus Query: 137 CAAAAACCACAATTCTGGCAAAAAAGAAAAATCCCCAAAATCTAGGGTGTATATCAGCAT 78 |||||||||||||||||||||||||||||||||||||||||||||||| | || | Sbjct: 1 CAAAAACCACAATTCTGGCAAAAAAGAAAAATCCCCAAAATCTAGGGTTTTCTTCT-CGC 59 Query: 77 TTAATGT-ACACTTAGACAACTTAATAACACATTGCGGACGTTTTTAATGTA--CTGAAT 21 ||| | || || | || ||| |||| | | || | | || |||||| Sbjct: 60 CCAATTTCACTTTTCTTCTACGAAATTCTCCATTCCTGCCGGCTGTCGGGTTTTCTGAAT 119 >At3g46480 68416.t04683 oxidoreductase, 2OG-Fe(II) oxygenase family protein low similarity to gibberellin 20-oxidase [gi:4678370]; contains Pfam domain PF03171, 2OG-Fe(II) oxygenase superfamily Length = 2422 Plus Strand HSPs: Score = 185 (33.8 bits), Expect = 5.8, P = 0.997 Identities = 107/168 (63%), Positives = 107/168 (63%), Strand = Plus / Plus
Border_2 (70913_LB1D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCG:ATT:AATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCATATATCCCCAATTTCACTTTTCTTCTACGA
AATTCTCCATTCCTGCCGGCTGTCGGGTTTTCTGAATCGATTCTCCTTCACCAACTTCTTCTCTGGTTCTGTTCGATTCTGATTTTTTTTCAAGGTCAAT
TTTTTCTTCTCTTTAAACTCTGCAAAATCGTGATCGATTAAATTCACCTCAGGGTTTTTTGATTTCTGAAAGAAGTTAATCTTCTTCGAAGGCGATTGCA
AAAGAGTGCTCTGCTGTGAATTTCCACTGGTATGTTCAATTTTTTCTGTTTTTGAAATTTTGTTTGCTAGAATTCGTGAAGGGATTGAAAAAATTGATGC
AGGTGGCTAAAGAATCTCTTGAATATTACGAGCTTATGTAGGTTTAGAGTGTAAATTCGAGACATGTGAGATTTTGGTGCTTTCTCATATTTTTGCATGC
TTCTGCATTGCTTCATAGCCCTAAAATTGCTCTCTTTTTTTTGTAGTTGGAGTCTGTATCTTTTTCACGGTTTTAGNGATGAATTTTTTTTTTGNANGGA
NTTTGAANTGGNNNCCGNANNNGGGGTGGCCTGGTTTTNGAAANGAGCCATCNAAACCGGGAANNAAAAACCGAGAGGGAGGCATTATCCCCCTTNCTNT
CNACNACCCANTATTGTTNCNAAACCCCTNGGGGAAAAACNACCTCTTTGGGGGTGGANCCCAAGGNAAACCCTT
| Start of BLAST Alignment: | < 617 / Exon 1 of 7 (Intron 1,2 in 5’ UTR) |
| First 15 bp Perfect Match: | < 569 / Exon 1 of 7 (Intron 1,2 in 5’ UTR) |
BLAST Details: Query Sequence: 70913_LB1D Length: (873 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g12840 68418.t01338 CCAAT-binding transcription factor... 2731 4.1e-119 1 >At5g12840 68418.t01338 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein contains Pfam profile: PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B Length = 2898 Plus Strand HSPs: Score = 2731 (415.8 bits), Expect = 4.1e-119, P = 4.1e-119 Identities = 631/752 (83%), Positives = 631/752 (83%), Strand = Plus / Plus Query: 124 AATTCAGTACATTAA-AAACGTCCGCAATGTGTTATTAAGTTGTCATATATC-CCCAATT 181 ||||| | | || ||| ||| ||| | | | ||| || | | || ||||||| Sbjct: 11 AATTCTGGCAAAAAAGAAAAATCCCCAAAATCT-AGG--GTTTTC-T-TCTCGCCCAATT 65 Query: 182 TCACTTTTCTTCTACGAAATTCTCCATTCCTGCCGGCTGTCGGGTTTTCTGAATCGATTC 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 66 TCACTTTTCTTCTACGAAATTCTCCATTCCTGCCGGCTGTCGGGTTTTCTGAATCGATTC 125 Query: 242 TCCTTCACCAACTTCTTCTCTGGTTCTGTTCGATTCTGANNNNNNNNCAAGGTCAATTTT 301 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 126 TCCTTCACCAACTTCTTCTCTGGTTCTGTTCGATTCTGATTTTTTTTCAAGGTCAATTTT 185 Query: 302 TTCTTCTCTTTAAACTCTGCAAAATCGTGATCGATTAAATTCACCTCAGGGTTTTTTGAT 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 186 TTCTTCTCTTTAAACTCTGCAAAATCGTGATCGATTAAATTCACCTCAGGGTTTTTTGAT 245 Query: 362 TTCTGAAAGAAGTTAATCTTCTTCGAAGGCGATTGCAAAAGAGTGCTCTGCTGTGAATTT 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 246 TTCTGAAAGAAGTTAATCTTCTTCGAAGGCGATTGCAAAAGAGTGCTCTGCTGTGAATTT 305 Query: 422 CCACTGGTATGTTCAATTTTTTCTGTTTTTGAAATTTTGTTTGCTAGAATTCGTGAAGGG 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 306 CCACTGGTATGTTCAATTTTTTCTGTTTTTGAAATTTTGTTTGCTAGAATTCGTGAAGGG 365 Query: 482 ATTGAAAAAATTGATGCAGGTGGCTAAAGAATCTCTTGAATATTACGAGCTTATGTAGGT 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 366 ATTGAAAAAATTGATGCAGGTGGCTAAAGAATCTCTTGAATATTACGAGCTTATGTAGGT 425 Query: 542 TTAGAGTGTAAATTCGAGACATGTGAGATTTTGGTGCTTTCTCATATTTTTGCATGCTTC 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 426 TTAGAGTGTAAATTCGAGACATGTGAGATTTTGGTGCTTTCTCATATTTTTGCATGCTTC 485 Query: 602 TGCATTGCTTCATAGCCCTAAAATTGCTCTCNNNNNNNNGTAGTTGGAGTCTGTATCTTT 661 ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 486 TGCATTGCTTCATAGCCCTAAAATTGCTCTCTTTTTTTTGTAGTTGGAGTCTGTATCTTT 545 Query: 662 TTCACGGTTTTAGNGATGAANNNNNNNNNNGNAN-GGANTTTGAANTGGNNNCCGNANNN 720 ||||||||||||| |||||| | ||| |||||| ||| | | | Sbjct: 546 TTCACGGTTTTAGTGATGAATTTTTTTTTTTGATTGGATTTTGAATTGGTTACTGAACAT 605 Query: 721 GGGGTGGCCTGGTTTTNGAAANGAGCCATCNAAACCGGGAANNAAAAACCGAGAGGGAGG 780 | | || | || || | | | || ||| |||||||||| ||||| ||||| || Sbjct: 606 GTGTTGACTTGATTATGTAGAGATGCAATCAAAACCGGGAAGAGAAAACGAAGAGGAAGT 665 Query: 781 CATTATCCCCCTTNCTNTCNACNACCCANTATTGTTNCNAAACCCCTNGGGGAAAAACNA 840 || || | || | || | | | || | ||| | | |||| | |||||||| | Sbjct: 666 CAATAATCACCATGCTGTTCAGCAGCCGATGATGTATGCAGAGCCCTGGTGGAAAAACAA 725 Query: 841 CCTCTTTGGGGGTGGANCCCAAGGNAAACCCT 872 | |||||| | || | | |||| | ||| | Sbjct: 726 CTCCTTTGGTGTTGTACCTCAAGCGAGACCTT 757