At1g22090 SYNGENTA 71067
Genomic Sequence (from TAIR)
aagaaaaaaaaaagaagtcaaaatcaaacttatgaatgaaagtaaagctcagaataaacggaaagtttccgtggttggaatgtgtaaacccttaccggct tgttgtcggaatctcgagaaatgctcctgtgttgctcggacgatcagtgtgtgtacttttgctgaagtgaaagattatgaaaagatctggggtaaatcag taaatgtaaaagcccttacctaaagcgatggcgttttaagggtacggtgaaaaaacaataaaaattgaacatgtgcgttgcaacatcgtcaagattgaca attga◄ag◄tccca►aatgaagcccatgaatgaaaccttcgccgccttcgccagacaaaacctaaaactataaaagcagcagtcgctaatttttggaagg agaaggagaaagATGAGTCGCCGGGTGGAATACACGTTAGCTCCTCCGCAGAGGAATGAATCTGACgtaattctctcatctttttatattgtttagcttg tgtactagtgttcctttcttacgatgttaagggtagtgattgattgattgattattttctctgatgggtcttagGGTTTTGATTATCCCGACGGTATCCC AATATCATACAATCTTCATAGGCTTCGTCACTTTGAGTGTGAAGGCAGTTATCCCAAGTATCCTTATGGTTCTTTGGTCAAGTTTTATGCAATGGTGGGA CTTCATCGTTACAATGTGTTGGAGgtaaacaatatagtgcttttctagtcgatatgctactggaactattaattattattatgatataccaattacattc tcaatctctttttccatctgtcagGGGAAAAATTTGCAGCTCGATACCCTAAAGAGTTTCAACATGAGAATCAATTGTGGTGCTTCTTCTTACTACATTA CTTTGGCTGCACGCGTTCCAGATAGCGGTTTGAAGCAGATCTTTCAGGTTCTAGTTCATGAAGAGCGTCTTGGCAGTTTAGACATGACATGTACTATCGC TAGACCTCGAGgtaaacatgtaactttacttgatcagtcattttgacttgtggcagtttacctgtacatctaacacttgctggttaatattgcacagTGA CTACCAATGTGCCTTTTCTACGTCCGCACAGCGAATCAGAGTATGATTATATGGACAATGATGAATTGCCTGACTGGCCTTCAGAGATTGCTTTCGATGA TACAAAACGGTTTCATCTGgtaagattattatttataaagtacatcctttgttgtttgtttaatgaattatcatatggatttataaatcatttaaaatgc atgaatcaatagagacacttgtggttttgcttttgcctactagttaattttattgagataccttgcagGTGAAGGAATCAGAGTTGCGAGACAATGATTG GATTCGACTCTATTTGGAACTTACACTTGTTGCTCACGATAGGTTTCTTACAGTTgtaagtgtcttttctctctttcatttgtttgcatatcaaaatgat ttagtggcattcaatattggtaataattaacattacatgattttgtttatgcagCACTATCTCTCCCAGTTGGAGATTGTGAAAGTTGCGATTGAAGAAG TGGAGCAACCGAATGCGAGTCTCAACACCAAAACTACATTTGTCTACATAACTTATAAGGACTTGGCAAAGGCTCAGATTGGTGAGCCGGTTGATCGCAA AGCTATTGTTAGAAAAATCATCAATGAGACTACGGGACTCTTGAGACTCCGGGGTGATTATTGGAGTGGAGAAAGAAGTGTGATCACTCCGGAGGAGGAA TATATGCTTCTCCATGGCGGAGAAAAAGTTCGAAACAATGAGCAGCGTTCTAAAAAACTTAAGCGTCGTGTAGGTGTTCATAGGCTATGGCGATGGTGGT ACCAGGCTTACAAAAACCGTGGCCTCCGCTCGTCGTCTTATTAAgtaatgaatgtggataagctgcataactattattaatggtctctgactaagttatt ttgtgcgtttggactgtttatgtggatttgtttttttgcggtttgtgtaagttataagggtgtactgttctcaacatctgaacactaatgtttagtttaa tcgtgcttggttttgtcttcttggaccaaatcctagttgtgaaatttgcctttactgcttcttctctgctttagttttctcttcatctctattcttttcc atggttttggcagatgatgttataaaaaataagattagagggaaatacttttaaccaaaaatagacattataaccataggaaacaagactagttaaacct gggaagagaaagagaccattgatgaggaattggcaaagcagagagacaatgtcttaaagcacattttgctctgtttcctctaatcataattccagctact tca
Border_1 (71067_LB1D)
TCTCGATACACCAAATCGAATTCATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTGTCAATCTTGA
CGATGTTGCAACGCACATGTTCAATTTTTATTGTTTTTTCACCGTACCCTTAAAACGCCATCGCTTTAGGTAAGGGCTTTTACATTTACTGATTTACCCC
AGATCTTTTCATAATCTTTCACTTCAGCAAAAGTACACACACTGATCGTCCGAGCAACACAGGAGCATTTCTCGAGATTCCGACAACAAGCCGGTAAGGG
TTTACACATTCCAACCACGGAAACTTTCCGTTTATTCTGAGCTTTACTTTCATTCATAAGTTTGATTTTGACTTCTTTTTTTTTCTTTGGCTACCCAAAA
AGATCSATNGGTTTTTNNATCTTTGATTTCATGTAGAGCTAAAAGAACAGGAACNACCACSCCRAGAGGTACNYACATTTATGGGYCGWRTTTTGAGACT
TTAGYACCGGAGGGCANGGGATTATTATCCGMSACCCTGGGACNAAAAAATGATTNNNGGANAANNNCAAAGTNTGCTANTTGACCGNTTTTTTTGCTGG
CCCNCTTTTTGCGNGCTGGAAGGGGATTTTTCCNGAAATTNANTNCATNTNGNGCCGTTCAGGANAAAAAATGNGAGGNGNTTTTTTTTACTACNTTACC
TTGGGAAGNCGCCTTTAAAAAAAAAGGTTTTTTTCGGAACAAAAACAAACTAGGGGTTGNGGATCTTTAAAANCTAACTATTGGGCACNTA
| Start of BLAST Alignment: | < 102 / Upstream |
| First 15 bp Perfect Match: | < 104 / Upstream |
BLAST Details: Query Sequence: 71067_LB1D Length: (791 letters) Database: GenBank AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N gb|AC069252.4|AC069252 Genomic sequence for Arabidopsis t... 2255 1.0e-95 1 >gb|AC069252.4 Genomic sequence for Arabidopsis thaliana BAC F2E2 from chromosome I Length = 91,825 Minus Strand HSPs: Score = 2255 (344.4 bits), Expect = 1.0e-95, P = 1.0e-95 Identities = 559/714 (78%), Positives = 569/714 (79%), Strand = Minus / Plus Query: 788 GTGCCCAATAGTTA-GNTTTTAAAGAT-CCNCAACCCCTAGTTTGTTT-TTGTTCCGAAA 732 ||| | ||||||| | |||| |||| || |||| ||| | || | ||| | || Sbjct: 62285 GTGACACATAGTTAAGTTTTTTAAGAAACCGAAACCACTACTA-GTCTATTGACACAGAA 62343 Query: 731 AAAACCNNNNNNNNNAAAGGCGNCTTCCCAAG-GTAANGTAGTNNNNNNNNNCNCCTCNC 673 | ||| | |||| || ||| | || || | | | Sbjct: 62344 AGAACTTTTACTTTTAGAGGCAATCTCA-AAGTGAAACATAC-AAAAAAAATCAGAT-GC 62400 Query: 672 ATTTTTTNTC-CTGAACGGCNCNANATGNANTNAATTTCNGGAAAAATCCCCTTCCAGCN 614 || || | |||| | || | | |||| | | | ||| | | ||| Sbjct: 62401 ATATTCAAAGTCAAAACGTACAGAAATAAAGTAAATT-CAAGTAGAATAGACATTCAGAC 62459 Query: 613 CGCAAAAAGNGGG-CCAGCAAAAAAANCGGTCAANTAGCANACTTTGNNNTTNTCCNNNA 555 ||||| | ||| |||||||||||| | ||| ||||| || ||| | | | | Sbjct: 62460 AGCAAAT-GAGGGACCAGCAAAAAAAACAA-CAACTAGCAAACATTGGACATATACATAA 62517 Query: 554 ATCATTTTTTNGTCCCAGGGTSKCGGATAATAATCCCNTGCCCTCCGGTRCTAAAGTCTC 495 |||||||||| |||||| |||++|||||||||||||| |||||| | ||+||| |||| | Sbjct: 62518 ATCATTTTTTAGTCCCATGGTCTCGGATAATAATCCCATGCCCTACAGTACTAGAGTCAC 62577 Query: 494 AAAAYWCGRCCCATAAATGTRNGTACCTCTYGGSGTGGTNGTTCCTGTTCTTTTAGCTCT 435 || |++||+|||||||||||+ ||||||||+||+|| || ||||||||||| |||||||| Sbjct: 62578 AAGATACGACCCATAAATGTATGTACCTCTTGGCGTCGTTGTTCCTGTTCTCTTAGCTCT 62637 Query: 434 ACATGAAATCAAAGATNNAAAAACCNATSGATCTTTTTGGGTAGCCAAAGNNNNNNNNN- 376 | ||||||||| ||| | ||||| | +|| |||||| | ||||||||| Sbjct: 62638 AGATGAAATCAGAGACTGAGAAACCTAGCGAACTTTTTCG-TAGCCAAAGAAAAAAAAAA 62696 Query: 375 GAAGTCAAAATCAAACTTATGAATGAAAGTAAAGCTCAGAATAAACGGAAAGTTTCCGTG 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62697 GAAGTCAAAATCAAACTTATGAATGAAAGTAAAGCTCAGAATAAACGGAAAGTTTCCGTG 62756 Query: 315 GTTGGAATGTGTAAACCCTTACCGGCTTGTTGTCGGAATCTCGAGAAATGCTCCTGTGTT 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62757 GTTGGAATGTGTAAACCCTTACCGGCTTGTTGTCGGAATCTCGAGAAATGCTCCTGTGTT 62816 Query: 255 GCTCGGACGATCAGTGTGTGTACTTTTGCTGAAGTGAAAGATTATGAAAAGATCTGGGGT 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62817 GCTCGGACGATCAGTGTGTGTACTTTTGCTGAAGTGAAAGATTATGAAAAGATCTGGGGT 62876 Query: 195 AAATCAGTAAATGTAAAAGCCCTTACCTAAAGCGATGGCGTTTTAAGGGTACGGTGAAAA 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62877 AAATCAGTAAATGTAAAAGCCCTTACCTAAAGCGATGGCGTTTTAAGGGTACGGTGAAAA 62936 Query: 135 AACAATAAAAATTGAACATGTGCGTTGCAACATCGTCAAGATTGACAATTGACG 82 |||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 62937 AACAATAAAAATTGAACATGTGCGTTGCAACATCGTCAAGATTGACAATTGAAG 62990
Border_2 (71067_LB2U)
AGAGAAGCACCNCAATTGATTCTCATGTTGNANCCTCTTAGGGTATCGAGCTGCAAATTTTTCCCCTGACAGATGGAAAAAGAGATTGAGAATGTAATTG
GTATATCATAATAATANNTAATAGTTCCAGTAGCATATCNACTANNAAAGCACTATATTGTTTACCNCCANCNCATTGTANCGATGAAGTCCCCACCATT
GCATAAAACNTGACCAAAGAACCATAAGGATNCTTGGGNTAACTNCCTTCTCNCTCAAAGTGACGAAGCCTANGAAGATTGTATGATATTGGGATACCGT
CGGGATAATCAAAACCCTAAGNNCCATCAGAGAAAATAATCAATCAATCAATCANTACCCTTANCNTCGTGAAGAAGGAACNCTAGTACACAAGCTAAAC
AATATAAAAAGATGAGAGAATTACGTCAGATTCATTCCTCTGCGGAGGAGCTAACGTGTATTCCACCCGGCGACTCATCTTTCTCCTTCTCCTTCCAAAA
ATTAGCGACTGCTGCTTTTATAGTTTTAGGTTTTGTCTGGCGAAGGCGGCGAAGGTTTCATTCATGGGCTTCATTCA
| Start of BLAST Alignment: | < 97 / Upstream |
| First 15 bp Perfect Match: | < 97 / Upstream |
| Reverse Complement |
BLAST Details: Query Sequence: 71067_LB2U Border #2 Length: (577 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F2E2 61356 2623 2.6e-112 1 F28L5 68136 398 8.5e-12 1 T23E23 51237 333 7.4e-09 1 F2E2 61356 Length = 91,825 Minus Strand HSPs: Score = 2623 (399.6 bits), Expect = 2.6e-112, P = 2.6e-112 Identities = 545/575 (94%), Positives = 545/575 (94%), Strand = Minus / Plus Query: 575 AATGAAGCCCATGAATGAAACCTTCGCCGCCTTCGCCAGACAAAACCTAAAACTATAAAA 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62996 AATGAAGCCCATGAATGAAACCTTCGCCGCCTTCGCCAGACAAAACCTAAAACTATAAAA 63055 Query: 515 GCAGCAGTCGCTAATTTTTGGAAGGAGAAGGAGAAAGATGAGTCGCCGGGTGGAATACAC 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63056 GCAGCAGTCGCTAATTTTTGGAAGGAGAAGGAGAAAGATGAGTCGCCGGGTGGAATACAC 63115 Query: 455 GTTAGCTCCTCCGCAGAGGAATGAATCTGACGTAATTCTCTCATCTTTTTATATTGTTTA 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63116 GTTAGCTCCTCCGCAGAGGAATGAATCTGACGTAATTCTCTCATCTTTTTATATTGTTTA 63175 Query: 395 GCTTGTGTACTAGNGTTCCTT-CTTCACGANGNTAAGGGTANTGATTGATTGATTGATTA 337 ||||||||||||| ||||||| ||| |||| | |||||||| |||||||||||||||||| Sbjct: 63176 GCTTGTGTACTAGTGTTCCTTTCTT-ACGATGTTAAGGGTAGTGATTGATTGATTGATTA 63234 Query: 336 TTTTCTCTGATGGNNCTTAGGGTTTTGATTATCCCGACGGTATCCCAATATCATACAATC 277 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63235 TTTTCTCTGATGGGTCTTAGGGTTTTGATTATCCCGACGGTATCCCAATATCATACAATC 63294 Query: 276 TTCNTAGGCTTCGTCACTTTGAGNGAGAAGGNAGTTANCCCAAGNATCCTTATGGTTCTT 217 ||| ||||||||||||||||||| | ||||| ||||| |||||| ||||||||||||||| Sbjct: 63295 TTCATAGGCTTCGTCACTTTGAGTGTGAAGGCAGTTATCCCAAGTATCCTTATGGTTCTT 63354 Query: 216 TGGTCANGTTTTATGCAATGGTGGGGACTTCATCGNTACAATGNGNTGGNGGTAAACAAT 157 |||||| |||||||||||||||||| ||||||||| ||||||| | ||| |||||||||| Sbjct: 63355 TGGTCAAGTTTTATGCAATGGTGGG-ACTTCATCGTTACAATGTGTTGGAGGTAAACAAT 63413 Query: 156 ATAGTGCTTTNNTAGTNGATATGCTACTGGAACTATTANNTATTATTATGATATACCAAT 97 |||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct: 63414 ATAGTGCTTTTCTAGTCGATATGCTACTGGAACTATTAATTATTATTATGATATACCAAT 63473 Query: 96 TACATTCTCAATCTCTTTTTCCATCTGTCAGGGGAAAAATTTGCAGCTCGATACCCTAAG 37 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63474 TACATTCTCAATCTCTTTTTCCATCTGTCAGGGGAAAAATTTGCAGCTCGATACCCTAA- 63532 Query: 36 AG-GNTNCAACATGAGAATCAATTGNGGTGCTTCT 3 || | | |||||||||||||||||| ||||||||| Sbjct: 63533 AGAGTTTCAACATGAGAATCAATTGTGGTGCTTCT 63567 F28L5 68136 Length = 48,404 Plus Strand HSPs: Score = 398 (65.8 bits), Expect = 8.5e-12, P = 8.5e-12 Identities = 220/364 (60%), Positives = 220/364 (60%), Strand = Plus / Plus