At2g21710 SYNGENTA 71079
Genomic Sequence (from TAIR)
accaaaaacgtgaaaggatattcatagatcaatctcaattcttaaggtcatgtatagataacggacTTTAGAATCGATCACGTTGCCAAACTTTGAAAAT ATATCCGTAAGATCTTTTTCATCGGTGTCCTGATCAAGACCACGAACAAAGCAAGTGTATTCAACATTTGTAGCCATtgtttgaaagagatatatcaaag ataaagtataggttctaccgagcccaaaaaatgcaaaaatatAGGTTCTACCGAGAATTGAACTCGGGTTACTGGATTCAGAGTCCAATGTCCTAACCGC TAGACCATAGAACCaattgatacgtatctaacttattatttatttatacttgttttatttcatcttctccgagccgttgctttgctctatctcttttcca ttttactactttctccgttcactgtaaaaccatctctctcaattctctccgacaacgttgctctaATGCTTCTCCACTGCAACGTTAGCTACTACACCTC AACGTTTTCCTTCATCTCCTCATCTCTCCGCCGTCAAGACAACGCCGACGATTCACAAGATACAGTAATCCGTCGCCGCCACAATGCTAGATCCATTTCT CTATACATCCGCCATAATCGAGACCTAAAGCTCAACAAAAACCCTAACGAATCTCAAGAAACCTTTGTTCCTCCTCCTCCTCCTCCGCGGCGAGATTTAG ACGGTGAAAACCGATCCAAGCTACTTGAGCTCTCTCTTGTAAC◄TAGA◄AGAACTCCACAATTTCCTGGTTCAATC►TACG►CTCAATCTGCTTCTGATG CTGATATTGCTTCTTCTCTTCCTTCGCTTCGTAATTTTCTCGGCTCTGATGGTGATGATGATGGAGAGAGTGAGAGGGAGATGATAGTTAAAGCGCTTGA GATTAGAAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTTAGGAAAGGTAGATTTGGGATTACGTATGCGACTAATGTCACTGATCGTTTGGGT GATTTCGTTGATCATGTTATGATTCAAGCTGCGGCGTTGAAACGGTTGCCGGAATTTTCAGAGTCTAGATTCAATCTTCGCGCTAGGACGGTTATTGAAG ACTCCAATTTCGTTCCTCTTGTAAGgtcaagctccatttttttgtgcttctgggtttgtgtatattagtgcacataagttgttcgataatatgtctctta gaaacaagttcaaagaagtagtagaatatttttaactatgtttctgaattgtgcagGTGGTTGAAGCACCATGAGTTGTCATATAATAGAATAGCGAAGA TCATATGCATGTCAAAAGGAAATCTCGACTCCATAAGGATCATGATCGAGTGGCTGAAGAGCATTCATGTGAAGGGTGAATTCATTGCAGTTGCGTTCTT GAGATCTGGGGATAATATATTGCAACGTAACCGTGAGGAACTAAACGAAATTGTTGAGTATCTAGAGAGCAATGGTGTGAGGAGGGATTGGATGGGTTAT GTGGTTGGAAGATGTCCTGAGTTGCTGTCTTTCAGCATGGAAGAAGTGAAAAGCCGTGTTGATTTCTTCTTGAAAATGGGTATGAATCAGAATGACTTTG GCACTATGGTCTATGATTATCCAAAGATAATTGGCTTCTTCTCATTCCAAGTGATGGAGAAAAAGgtactgaaagctctttttaatactccagcgttaag attgtcgtttaagttcataattgtgttgcttgtattaaaccagATCAATTACCTGAAAGAGTTTGGCCTTAGCACAGAAGAAGTTGGGAGACTATTAGCC TACAAGCCACACCTAATGGGATGCAGTATTGAAGAAAGATGGAAGCCTCTAGTCAAATATTTCTACTACCTTGGAATCCCCAAAGAAGGAATGAAAAGAA TCCTTGTCGTGAAACCAATTCTTTACTGCATTGATTTGGAGAAGACGATCGCCCCAAAGgtagttgaacttcgttataacgtatgaactccctataccat acacacagcagattccattaactcagcttctctcttgtgtttttaaagGTAAGATTTTTGCAGGAGATGGGTATCCCTAATGAAGCCATTGGAAACATGT TAGTAAAGTTTCCTTCTTTACTTACAAATAGCCTCTACAAGAAAATCCGACCTgtggttagtaattacttcctctatgaaacaaagatgttccatcgaat gttgttatgttagtgttgttactcataacatatgatgatttcagaagctgcatctgatattgtacaagttgtggttgtacagGTGATTTTTCTCTTAACC AGAGCCGGAGTAACCCAAAAGGATATCGGTAAAGTTATAGCAATGGATCCAGCTCTCCTTGGATGCAGCATAGGGACGAAGCTAGAACCCAACATGAGAT ACTATATATCATTGGGAATTCGATTTTATCAACTAGGCGAAATGATTGCTGATTTCCCGATGCTGCTTCGGTATAACGTTGATAATCTGCGCCCAAAATA CCGTTACTTGCGAAGAACAATGATCCGTCCGCTTCAAGATCTCATAGAGTTTCCCAGgtaccagaaaaagaattgataaaaataatcccttcaaagtgta gcttttgagaaccatggcacttgtaacagATTTTTTAGCTACTCACTAGAGCGTCGGATAATCCCAAGGCACACCATTATGGTTGAGAACAGAGTTAACT TCAAGCTCAGATACATGTTGGCTTGTACGGATGAAGAGTTTGAGAGGAGAGTGAGAGATAAAGTGGAGAGAAGAGAGAGATTCGAAGCTGGCCTCGACTC TGAGGATTCTCAACCGTCGGATGAGAACATCTCCGATCAGGAGATTGCTTTCTCAGACGAAGCGGAAGAAGAAGAGGATTTGACAGAATGAagaggattt agcataatgaatagttctgtacagtttaacacaattataaacgaacgaatgtgtgaatgagtctatatttataaatactaaaatgagaatacttgttctt tcatgtcctaagaattcgaaaaagcacttttacagtttgtgaaaccaaacgctcaatcgcctcctccgccatcttttctcttccggtgctcttgattctc tcaactccgccgtatatatttcaaataaagagagagtcggtttagggttaaccagaagtgagtgtataattgatagattagagagtattgggactttttt aatctatagcgataacttcgggtccttaagttgaaaataatttttcttcagctattgactgaaatgacatcgttttagtATGATTCTCAGTTTTCGGCTA TTTG
Border_1 (71079_LB2D)
AATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTG
TTACAAGAGAGAGCTCAAGTAGCTTGGATCGGTTTTCACCGTCTAAATCTCGCCGCGGAGGAGGAGGAGGAGGAACAAAGGTTTCTTGAGATTCGTTAGG
GTTTTTGTTGAGCTTTAGGTCTCGATTATGGCGGATGTATAGAGAAATGGATCTAGCATTGTGGNGGCAACCNATTACTGTATCTNGNGAATCGTCGGCG
TTGNCTTGACGNCGGANAGATGAGGANATGACGGAAANCGNTGACGNNNANTACCTAACNNTGNAGAGGANAAGCNTTATAGCNNCGTTNTCGGAGAGAA
TTGANAGAGATGGCTCTACAGTGAACGGANAANGTAGNNCTATGGAANAGAGATAGAGCAAAGCAACGGCTNGNANAACATNAAATATAACAATGTATAA
ATAAATAATANNTCNGATACGTATCANTTGGTTCTATGGYCTAGCGGTTAGGACATTGGACTCTGAATCCAGCAACCYGAGGTCAATGCTCGNNAGAACC
TATATTTTTGCATTTTTTGGGCTCGGCAGAACCTATACTTTATCTTTGATATATCTCTTTCAAACAGTGGCTACANCATGTTGAATACACTTGCTTTGGT
CGGGGTCTNGATCAGGACACCGATGAAAAAGATCTTACTGAT
| Start of BLAST Alignment: | NT 282 / Exon 1 of 6 |
| First 15 bp Perfect Match: | NT 278 / Exon 1 of 6 |
BLAST Details: Query Sequence: 71079_LB2D Length: (742 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g21710 68415.t02428 mitochondrial transcription termin... 1205 2.7e-49 1 At2g21690 68415.t02426 RNA-binding protein, putative simi... 319 4.9e-09 1 At4g03410 68417.t00424 peroxisomal membrane protein-relat... 325 9.0e-07 1 At1g35830 68414.t04020 VQ motif-containing protein contai... 185 0.99 1 >At2g21710 68415.t02428 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF Length = 2533 Minus Strand HSPs: Score = 1205 (186.8 bits), Expect = 2.7e-49, P = 2.7e-49 Identities = 255/282 (90%), Positives = 255/282 (90%), Strand = Minus / Plus Query: 377 ANGCTTNTCCTCTNCANNGTTAGGTANTNNNCGTCANCGNTTTCCGTCATNTCCTCATCT 318 | |||| ||| || || ||||| || | | ||| || ||||| |||| ||||||||| Sbjct: 1 ATGCTTCTCCACTGCAACGTTAGCTACTACACCTCAACGTTTTCCTTCATCTCCTCATCT 60 Query: 317 NTCCGNCGTCAAGNCAACGCCGACGATTCNCNAGATACAGTAATNGGTTGCCNCCACAAT 258 |||| ||||||| ||||||||||||||| | |||||||||||| || ||| ||||||| Sbjct: 61 CTCCGCCGTCAAGACAACGCCGACGATTCACAAGATACAGTAATCCGTCGCCGCCACAAT 120 Query: 257 GCTAGATCCATTTCTCTATACATCCGCCATAATCGAGACCTAAAGCTCAACAAAAACCCT 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 GCTAGATCCATTTCTCTATACATCCGCCATAATCGAGACCTAAAGCTCAACAAAAACCCT 180 Query: 197 AACGAATCTCAAGAAACCTTTGTTCCTCCTCCTCCTCCTCCGCGGCGAGATTTAGACGGT 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 AACGAATCTCAAGAAACCTTTGTTCCTCCTCCTCCTCCTCCGCGGCGAGATTTAGACGGT 240 Query: 137 GAAAACCGATCCAAGCTACTTGAGCTCTCTCTTGTAACAGGA 96 |||||||||||||||||||||||||||||||||||||| || Sbjct: 241 GAAAACCGATCCAAGCTACTTGAGCTCTCTCTTGTAACTAGA 282 >At2g21690 68415.t02426 RNA-binding protein, putative similar to Glycine-rich RNA-binding protein from {Sinapis alba} SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 484 Plus Strand HSPs: Score = 319 (53.9 bits), Expect = 4.9e-09, P = 4.9e-09 Identities = 69/75 (92%), Positives = 69/75 (92%), Strand = Plus / Plus
Border_2 (71079_LB1U)
ATCGAATTCATTCGGCGTTAATCTCAATCTGCTTCTGATGCTGATATTGCTTCTTCTCTTCCTTCGCTTCGTAATTTTCTCGGCTCTGATGGTGATGATG
ATGGAGAGAGTGAGAGGGAGATGATAGTTAAAGCGCTTGAGATTAGAAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTTAGGAAAGGTAGATT
TGGGATTACGTATGCGACTAATGTCACTGATCGTTTGGGTGATTTCGTTGATCATGTTATGATTCAAGCTGCGGCGTTGAAACGGTTGCCGGAATTTTCA
GAGTCTAGATTCAATCTTCGCGCTAGGACGGTTATTGAAGACTCCAATTTCGTTCCTCTTGTAAGGTCAAGCTCCATTTTTTTGTGCTTCTGGGTTTGTG
TATATTAGTGCACATAAGTTGTTCGATAATATGTCTCTTAGAAACAAGTTCAAAGAAGTAGTAGAATATTTTTAACTATGTTTCTGAATTGTGCAGGTGG
TTGAAGCACCATGAGTTGTCATATAATAGAATAGCGAAGATCATATGCATGTCAAAAGGAAATCTCGACTCCATAAGGATCATGATCGAGTGGCTGAAGA
GCATTCATGTGAAGGGTGAATTCATTGCAGTTGCGTTCTTGAGATCTGGGGATAATATATTGCAACGTAACCGTGAGGAACTAAACGAAATTGTTGAGTA
TCTAGAGAGCAATGGTGTGAGGAGGGATTGGATGGG
| Start of BLAST Alignment: | NT 309 / Exon 1 of 6 |
| First 15 bp Perfect Match: | NT 313 / Exon 1 of 6 |
BLAST Details: Query Sequence: 71079_LB1U Length: (736 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g21710 68415.t02428 mitochondrial transcription termin... 3572 5.0e-157 1 At1g10610 68414.t01071 basic helix-loop-helix (bHLH) fami... 222 0.11 1 At3g22880 68416.t02590 meiotic recombination protein, put... 218 0.17 1 At1g47260 68414.t04785 bacterial transferase hexapeptide ... 216 0.20 1 >At2g21710 68415.t02428 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF Length = 2533 Plus Strand HSPs: Score = 3572 (542.0 bits), Expect = 5.0e-157, P = 5.0e-157 Identities = 716/718 (99%), Positives = 716/718 (99%), Strand = Plus / Plus Query: 19 TAATCTCAATCTGCTTCTGATGCTGATATTGCTTCTTCTCTTCCTTCGCTTCGTAATTTT 78 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 310 TACGCTCAATCTGCTTCTGATGCTGATATTGCTTCTTCTCTTCCTTCGCTTCGTAATTTT 369 Query: 79 CTCGGCTCTGATGGTGATGATGATGGAGAGAGTGAGAGGGAGATGATAGTTAAAGCGCTT 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 370 CTCGGCTCTGATGGTGATGATGATGGAGAGAGTGAGAGGGAGATGATAGTTAAAGCGCTT 429 Query: 139 GAGATTAGAAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTTAGGAAAGGTAGA 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 430 GAGATTAGAAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTTAGGAAAGGTAGA 489 Query: 199 TTTGGGATTACGTATGCGACTAATGTCACTGATCGTTTGGGTGATTTCGTTGATCATGTT 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 490 TTTGGGATTACGTATGCGACTAATGTCACTGATCGTTTGGGTGATTTCGTTGATCATGTT 549 Query: 259 ATGATTCAAGCTGCGGCGTTGAAACGGTTGCCGGAATTTTCAGAGTCTAGATTCAATCTT 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 550 ATGATTCAAGCTGCGGCGTTGAAACGGTTGCCGGAATTTTCAGAGTCTAGATTCAATCTT 609 Query: 319 CGCGCTAGGACGGTTATTGAAGACTCCAATTTCGTTCCTCTTGTAAGGTCAAGCTCCATT 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 610 CGCGCTAGGACGGTTATTGAAGACTCCAATTTCGTTCCTCTTGTAAGGTCAAGCTCCATT 669 Query: 379 TTTTTGTGCTTCTGGGTTTGTGTATATTAGTGCACATAAGTTGTTCGATAATATGTCTCT 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 670 TTTTTGTGCTTCTGGGTTTGTGTATATTAGTGCACATAAGTTGTTCGATAATATGTCTCT 729 Query: 439 TAGAAACAAGTTCAAAGAAGTAGTAGAATATTTTTAACTATGTTTCTGAATTGTGCAGGT 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 730 TAGAAACAAGTTCAAAGAAGTAGTAGAATATTTTTAACTATGTTTCTGAATTGTGCAGGT 789 Query: 499 GGTTGAAGCACCATGAGTTGTCATATAATAGAATAGCGAAGATCATATGCATGTCAAAAG 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 790 GGTTGAAGCACCATGAGTTGTCATATAATAGAATAGCGAAGATCATATGCATGTCAAAAG 849 Query: 559 GAAATCTCGACTCCATAAGGATCATGATCGAGTGGCTGAAGAGCATTCATGTGAAGGGTG 618 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 850 GAAATCTCGACTCCATAAGGATCATGATCGAGTGGCTGAAGAGCATTCATGTGAAGGGTG 909 Query: 619 AATTCATTGCAGTTGCGTTCTTGAGATCTGGGGATAATATATTGCAACGTAACCGTGAGG 678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 910 AATTCATTGCAGTTGCGTTCTTGAGATCTGGGGATAATATATTGCAACGTAACCGTGAGG 969 Query: 679 AACTAAACGAAATTGTTGAGTATCTAGAGAGCAATGGTGTGAGGAGGGATTGGATGGG 736 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 970 AACTAAACGAAATTGTTGAGTATCTAGAGAGCAATGGTGTGAGGAGGGATTGGATGGG 1027 >At1g10610 68414.t01071 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain Length = 2419 Plus Strand HSPs: Score = 222 (39.4 bits), Expect = 0.11, P = 0.11 Identities = 228/393 (58%), Positives = 228/393 (58%), Strand = Plus / Plus