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At2g21710 SYNGENTA 71079

Genomic Sequence (from TAIR)
accaaaaacgtgaaaggatattcatagatcaatctcaattcttaaggtcatgtatagataacggacTTTAGAATCGATCACGTTGCCAAACTTTGAAAAT
ATATCCGTAAGATCTTTTTCATCGGTGTCCTGATCAAGACCACGAACAAAGCAAGTGTATTCAACATTTGTAGCCATtgtttgaaagagatatatcaaag
ataaagtataggttctaccgagcccaaaaaatgcaaaaatatAGGTTCTACCGAGAATTGAACTCGGGTTACTGGATTCAGAGTCCAATGTCCTAACCGC
TAGACCATAGAACCaattgatacgtatctaacttattatttatttatacttgttttatttcatcttctccgagccgttgctttgctctatctcttttcca
ttttactactttctccgttcactgtaaaaccatctctctcaattctctccgacaacgttgctctaATGCTTCTCCACTGCAACGTTAGCTACTACACCTC
AACGTTTTCCTTCATCTCCTCATCTCTCCGCCGTCAAGACAACGCCGACGATTCACAAGATACAGTAATCCGTCGCCGCCACAATGCTAGATCCATTTCT
CTATACATCCGCCATAATCGAGACCTAAAGCTCAACAAAAACCCTAACGAATCTCAAGAAACCTTTGTTCCTCCTCCTCCTCCTCCGCGGCGAGATTTAG
ACGGTGAAAACCGATCCAAGCTACTTGAGCTCTCTCTTGTAACTAGAAGAACTCCACAATTTCCTGGTTCAATCTACGCTCAATCTGCTTCTGATG
CTGATATTGCTTCTTCTCTTCCTTCGCTTCGTAATTTTCTCGGCTCTGATGGTGATGATGATGGAGAGAGTGAGAGGGAGATGATAGTTAAAGCGCTTGA
GATTAGAAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTTAGGAAAGGTAGATTTGGGATTACGTATGCGACTAATGTCACTGATCGTTTGGGT
GATTTCGTTGATCATGTTATGATTCAAGCTGCGGCGTTGAAACGGTTGCCGGAATTTTCAGAGTCTAGATTCAATCTTCGCGCTAGGACGGTTATTGAAG
ACTCCAATTTCGTTCCTCTTGTAAGgtcaagctccatttttttgtgcttctgggtttgtgtatattagtgcacataagttgttcgataatatgtctctta
gaaacaagttcaaagaagtagtagaatatttttaactatgtttctgaattgtgcagGTGGTTGAAGCACCATGAGTTGTCATATAATAGAATAGCGAAGA
TCATATGCATGTCAAAAGGAAATCTCGACTCCATAAGGATCATGATCGAGTGGCTGAAGAGCATTCATGTGAAGGGTGAATTCATTGCAGTTGCGTTCTT
GAGATCTGGGGATAATATATTGCAACGTAACCGTGAGGAACTAAACGAAATTGTTGAGTATCTAGAGAGCAATGGTGTGAGGAGGGATTGGATGGGTTAT
GTGGTTGGAAGATGTCCTGAGTTGCTGTCTTTCAGCATGGAAGAAGTGAAAAGCCGTGTTGATTTCTTCTTGAAAATGGGTATGAATCAGAATGACTTTG
GCACTATGGTCTATGATTATCCAAAGATAATTGGCTTCTTCTCATTCCAAGTGATGGAGAAAAAGgtactgaaagctctttttaatactccagcgttaag
attgtcgtttaagttcataattgtgttgcttgtattaaaccagATCAATTACCTGAAAGAGTTTGGCCTTAGCACAGAAGAAGTTGGGAGACTATTAGCC
TACAAGCCACACCTAATGGGATGCAGTATTGAAGAAAGATGGAAGCCTCTAGTCAAATATTTCTACTACCTTGGAATCCCCAAAGAAGGAATGAAAAGAA
TCCTTGTCGTGAAACCAATTCTTTACTGCATTGATTTGGAGAAGACGATCGCCCCAAAGgtagttgaacttcgttataacgtatgaactccctataccat
acacacagcagattccattaactcagcttctctcttgtgtttttaaagGTAAGATTTTTGCAGGAGATGGGTATCCCTAATGAAGCCATTGGAAACATGT
TAGTAAAGTTTCCTTCTTTACTTACAAATAGCCTCTACAAGAAAATCCGACCTgtggttagtaattacttcctctatgaaacaaagatgttccatcgaat
gttgttatgttagtgttgttactcataacatatgatgatttcagaagctgcatctgatattgtacaagttgtggttgtacagGTGATTTTTCTCTTAACC
AGAGCCGGAGTAACCCAAAAGGATATCGGTAAAGTTATAGCAATGGATCCAGCTCTCCTTGGATGCAGCATAGGGACGAAGCTAGAACCCAACATGAGAT
ACTATATATCATTGGGAATTCGATTTTATCAACTAGGCGAAATGATTGCTGATTTCCCGATGCTGCTTCGGTATAACGTTGATAATCTGCGCCCAAAATA
CCGTTACTTGCGAAGAACAATGATCCGTCCGCTTCAAGATCTCATAGAGTTTCCCAGgtaccagaaaaagaattgataaaaataatcccttcaaagtgta
gcttttgagaaccatggcacttgtaacagATTTTTTAGCTACTCACTAGAGCGTCGGATAATCCCAAGGCACACCATTATGGTTGAGAACAGAGTTAACT
TCAAGCTCAGATACATGTTGGCTTGTACGGATGAAGAGTTTGAGAGGAGAGTGAGAGATAAAGTGGAGAGAAGAGAGAGATTCGAAGCTGGCCTCGACTC
TGAGGATTCTCAACCGTCGGATGAGAACATCTCCGATCAGGAGATTGCTTTCTCAGACGAAGCGGAAGAAGAAGAGGATTTGACAGAATGAagaggattt
agcataatgaatagttctgtacagtttaacacaattataaacgaacgaatgtgtgaatgagtctatatttataaatactaaaatgagaatacttgttctt
tcatgtcctaagaattcgaaaaagcacttttacagtttgtgaaaccaaacgctcaatcgcctcctccgccatcttttctcttccggtgctcttgattctc
tcaactccgccgtatatatttcaaataaagagagagtcggtttagggttaaccagaagtgagtgtataattgatagattagagagtattgggactttttt
aatctatagcgataacttcgggtccttaagttgaaaataatttttcttcagctattgactgaaatgacatcgttttagtATGATTCTCAGTTTTCGGCTA
TTTG

Border_1 (71079_LB2D)

AATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTG
TTACAAGAGAGAGCTCAAGTAGCTTGGATCGGTTTTCACCGTCTAAATCTCGCCGCGGAGGAGGAGGAGGAGGAACAAAGGTTTCTTGAGATTCGTTAGG
GTTTTTGTTGAGCTTTAGGTCTCGATTATGGCGGATGTATAGAGAAATGGATCTAGCATTGTGGNGGCAACCNATTACTGTATCTNGNGAATCGTCGGCG
TTGNCTTGACGNCGGANAGATGAGGANATGACGGAAANCGNTGACGNNNANTACCTAACNNTGNAGAGGANAAGCNTTATAGCNNCGTTNTCGGAGAGAA
TTGANAGAGATGGCTCTACAGTGAACGGANAANGTAGNNCTATGGAANAGAGATAGAGCAAAGCAACGGCTNGNANAACATNAAATATAACAATGTATAA
ATAAATAATANNTCNGATACGTATCANTTGGTTCTATGGYCTAGCGGTTAGGACATTGGACTCTGAATCCAGCAACCYGAGGTCAATGCTCGNNAGAACC
TATATTTTTGCATTTTTTGGGCTCGGCAGAACCTATACTTTATCTTTGATATATCTCTTTCAAACAGTGGCTACANCATGTTGAATACACTTGCTTTGGT
CGGGGTCTNGATCAGGACACCGATGAAAAAGATCTTACTGAT

Start of BLAST Alignment:NT 282 / Exon 1 of 6
First 15 bp Perfect Match:NT 278 / Exon 1 of 6
BLAST Details:
Query Sequence: 71079_LB2D 
Length: (742 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At2g21710 68415.t02428 mitochondrial transcription termin...  1205  2.7e-49   1
At2g21690 68415.t02426 RNA-binding protein, putative simi...   319  4.9e-09   1
At4g03410 68417.t00424 peroxisomal membrane protein-relat...   325  9.0e-07   1
At1g35830 68414.t04020 VQ motif-containing protein contai...   185  0.99      1



>At2g21710 68415.t02428 mitochondrial transcription termination factor-related
           / mTERF-related contains Pfam profile PF02536: mTERF
        Length = 2533

  Minus Strand HSPs:

 Score = 1205 (186.8 bits), Expect = 2.7e-49, P = 2.7e-49
 Identities = 255/282 (90%), Positives = 255/282 (90%), Strand = Minus / Plus

Query:   377 ANGCTTNTCCTCTNCANNGTTAGGTANTNNNCGTCANCGNTTTCCGTCATNTCCTCATCT 318
             | |||| ||| || ||  ||||| || |   | ||| || ||||| |||| |||||||||
Sbjct:     1 ATGCTTCTCCACTGCAACGTTAGCTACTACACCTCAACGTTTTCCTTCATCTCCTCATCT 60

Query:   317 NTCCGNCGTCAAGNCAACGCCGACGATTCNCNAGATACAGTAATNGGTTGCCNCCACAAT 258
              |||| ||||||| ||||||||||||||| | ||||||||||||  || ||| |||||||
Sbjct:    61 CTCCGCCGTCAAGACAACGCCGACGATTCACAAGATACAGTAATCCGTCGCCGCCACAAT 120

Query:   257 GCTAGATCCATTTCTCTATACATCCGCCATAATCGAGACCTAAAGCTCAACAAAAACCCT 198
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   121 GCTAGATCCATTTCTCTATACATCCGCCATAATCGAGACCTAAAGCTCAACAAAAACCCT 180

Query:   197 AACGAATCTCAAGAAACCTTTGTTCCTCCTCCTCCTCCTCCGCGGCGAGATTTAGACGGT 138
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   181 AACGAATCTCAAGAAACCTTTGTTCCTCCTCCTCCTCCTCCGCGGCGAGATTTAGACGGT 240

Query:   137 GAAAACCGATCCAAGCTACTTGAGCTCTCTCTTGTAACAGGA 96
             ||||||||||||||||||||||||||||||||||||||  ||
Sbjct:   241 GAAAACCGATCCAAGCTACTTGAGCTCTCTCTTGTAACTAGA 282


>At2g21690 68415.t02426 RNA-binding protein, putative similar to Glycine-rich
           RNA-binding protein from {Sinapis alba} SP|P49311, {Brassica napus}
           SP|Q05966, {Arabidopsis thaliana} SP|Q03251; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)
        Length = 484

  Plus Strand HSPs:

 Score = 319 (53.9 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 69/75 (92%), Positives = 69/75 (92%), Strand = Plus / Plus


Border_2 (71079_LB1U)

ATCGAATTCATTCGGCGTTAATCTCAATCTGCTTCTGATGCTGATATTGCTTCTTCTCTTCCTTCGCTTCGTAATTTTCTCGGCTCTGATGGTGATGATG
ATGGAGAGAGTGAGAGGGAGATGATAGTTAAAGCGCTTGAGATTAGAAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTTAGGAAAGGTAGATT
TGGGATTACGTATGCGACTAATGTCACTGATCGTTTGGGTGATTTCGTTGATCATGTTATGATTCAAGCTGCGGCGTTGAAACGGTTGCCGGAATTTTCA
GAGTCTAGATTCAATCTTCGCGCTAGGACGGTTATTGAAGACTCCAATTTCGTTCCTCTTGTAAGGTCAAGCTCCATTTTTTTGTGCTTCTGGGTTTGTG
TATATTAGTGCACATAAGTTGTTCGATAATATGTCTCTTAGAAACAAGTTCAAAGAAGTAGTAGAATATTTTTAACTATGTTTCTGAATTGTGCAGGTGG
TTGAAGCACCATGAGTTGTCATATAATAGAATAGCGAAGATCATATGCATGTCAAAAGGAAATCTCGACTCCATAAGGATCATGATCGAGTGGCTGAAGA
GCATTCATGTGAAGGGTGAATTCATTGCAGTTGCGTTCTTGAGATCTGGGGATAATATATTGCAACGTAACCGTGAGGAACTAAACGAAATTGTTGAGTA
TCTAGAGAGCAATGGTGTGAGGAGGGATTGGATGGG

Start of BLAST Alignment:NT 309 / Exon 1 of 6
First 15 bp Perfect Match:NT 313 / Exon 1 of 6
BLAST Details:
Query Sequence: 71079_LB1U 
Length: (736 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At2g21710 68415.t02428 mitochondrial transcription termin...  3572  5.0e-157  1
At1g10610 68414.t01071 basic helix-loop-helix (bHLH) fami...   222  0.11      1
At3g22880 68416.t02590 meiotic recombination protein, put...   218  0.17      1
At1g47260 68414.t04785 bacterial transferase hexapeptide ...   216  0.20      1



>At2g21710 68415.t02428 mitochondrial transcription termination factor-related
           / mTERF-related contains Pfam profile PF02536: mTERF
        Length = 2533

  Plus Strand HSPs:

 Score = 3572 (542.0 bits), Expect = 5.0e-157, P = 5.0e-157
 Identities = 716/718 (99%), Positives = 716/718 (99%), Strand = Plus / Plus

Query:    19 TAATCTCAATCTGCTTCTGATGCTGATATTGCTTCTTCTCTTCCTTCGCTTCGTAATTTT 78
             ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   310 TACGCTCAATCTGCTTCTGATGCTGATATTGCTTCTTCTCTTCCTTCGCTTCGTAATTTT 369

Query:    79 CTCGGCTCTGATGGTGATGATGATGGAGAGAGTGAGAGGGAGATGATAGTTAAAGCGCTT 138
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   370 CTCGGCTCTGATGGTGATGATGATGGAGAGAGTGAGAGGGAGATGATAGTTAAAGCGCTT 429

Query:   139 GAGATTAGAAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTTAGGAAAGGTAGA 198
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   430 GAGATTAGAAGGAAAGTGACGAAAGAGATTATCAAAGAGTCTTTGGTTAGGAAAGGTAGA 489

Query:   199 TTTGGGATTACGTATGCGACTAATGTCACTGATCGTTTGGGTGATTTCGTTGATCATGTT 258
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   490 TTTGGGATTACGTATGCGACTAATGTCACTGATCGTTTGGGTGATTTCGTTGATCATGTT 549

Query:   259 ATGATTCAAGCTGCGGCGTTGAAACGGTTGCCGGAATTTTCAGAGTCTAGATTCAATCTT 318
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   550 ATGATTCAAGCTGCGGCGTTGAAACGGTTGCCGGAATTTTCAGAGTCTAGATTCAATCTT 609

Query:   319 CGCGCTAGGACGGTTATTGAAGACTCCAATTTCGTTCCTCTTGTAAGGTCAAGCTCCATT 378
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   610 CGCGCTAGGACGGTTATTGAAGACTCCAATTTCGTTCCTCTTGTAAGGTCAAGCTCCATT 669

Query:   379 TTTTTGTGCTTCTGGGTTTGTGTATATTAGTGCACATAAGTTGTTCGATAATATGTCTCT 438
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   670 TTTTTGTGCTTCTGGGTTTGTGTATATTAGTGCACATAAGTTGTTCGATAATATGTCTCT 729

Query:   439 TAGAAACAAGTTCAAAGAAGTAGTAGAATATTTTTAACTATGTTTCTGAATTGTGCAGGT 498
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   730 TAGAAACAAGTTCAAAGAAGTAGTAGAATATTTTTAACTATGTTTCTGAATTGTGCAGGT 789

Query:   499 GGTTGAAGCACCATGAGTTGTCATATAATAGAATAGCGAAGATCATATGCATGTCAAAAG 558
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   790 GGTTGAAGCACCATGAGTTGTCATATAATAGAATAGCGAAGATCATATGCATGTCAAAAG 849

Query:   559 GAAATCTCGACTCCATAAGGATCATGATCGAGTGGCTGAAGAGCATTCATGTGAAGGGTG 618
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   850 GAAATCTCGACTCCATAAGGATCATGATCGAGTGGCTGAAGAGCATTCATGTGAAGGGTG 909

Query:   619 AATTCATTGCAGTTGCGTTCTTGAGATCTGGGGATAATATATTGCAACGTAACCGTGAGG 678
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   910 AATTCATTGCAGTTGCGTTCTTGAGATCTGGGGATAATATATTGCAACGTAACCGTGAGG 969

Query:   679 AACTAAACGAAATTGTTGAGTATCTAGAGAGCAATGGTGTGAGGAGGGATTGGATGGG 736
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   970 AACTAAACGAAATTGTTGAGTATCTAGAGAGCAATGGTGTGAGGAGGGATTGGATGGG 1027


>At1g10610 68414.t01071 basic helix-loop-helix (bHLH) family protein contains
           Pfam profile: PF00010 helix-loop-helix DNA-binding domain
        Length = 2419

  Plus Strand HSPs:

 Score = 222 (39.4 bits), Expect = 0.11, P = 0.11
 Identities = 228/393 (58%), Positives = 228/393 (58%), Strand = Plus / Plus