At3g18290 SYNGENTA 71954
Genomic Sequence (from TAIR)
tcataaaatctcaaagccaaattcatcttttcttttgaaagtgctccctcaaaagctaaacctcaaacatataaaatagcaaattcattttaacaaaagc ttaatgaattccacgtaagcaattacataacgtttttgcccctagtcagtagagtccctccttctaactccgagaaccagcgtccatgtctcgcggacca aatgcgttcgtaggtaagacgcttgcacgtgtcgagatgtaatcggtcacgtgccaacctgggttggttgcatcagcatccgacgtggcgatgtgaatgg ccacgtgctacaaaacctatgtatagaaacacccacccaatccccaagcacttttattcattttctataaaaaaatttacaaggatcgtataatactact aacagttttttttaaatattttccagataaacattaa◄taaaacgataaaaggcaaaaaataaaaaagaaaagaaagcaa►aagcaaaatcaaaatcgat atatcagacaacgcctcgacctttctttctttttttccttctcatcgtctccgttgaacaacaccacacaaacaccagaagaacaccagataattcccat ggtgaaccgagctcagatttgaaaattgaaggtcgtagacgaatcataaggaaagagagaagtggtttgagatttcttttttgacggacgaaaacggaga taagctttgggggaaATGGCGACGCCGTTACCAGATTTTGAGACGGCGAGAGGCGGCGGAGCAGTGGCGTCTTCTTCAACCACGGTTCTTCCGAGTTCTG TGTCTTCTTCTTCTTCTTCATCTCGTCCGTTGCCTGTGGCGAATTCGTTCTCGGATGACGCGGAAGAGATTTCTCCGATCCTGATTTTCTTGTTCTTTCA TAAGGCAGTATGTAGTGAGCTTGAAGCTCTTCATAGATTGGCTCTTGAGTTTGCTACTGGTCACCATGTCGATCTCCGGCTGCTTCGTGAACGGTACCGG TTCTTGAGATCCATCTATAAGCATCACTGCAATGCCGAAGACGAGgtaatgcgaaaacctggtcctcttcttttaaatttgatctcatcatgttctgaaa actgctgaattagaatttggaaccatctctacttggattttgaactcaatacatatagctgcaaatttgtgtaaatctgacttgattttatcttaaacga attgtaagtctcaattagtctcttgctgatcatcctattgattctatgagtgcgttgtagatagggaatctattgcaacatatttgtattgctatgttat gaggaagaattgttgacagttgcaaatctgtggatgtagGTGATATTTTCAGCTCTTGACATACGTGTGAAGAATGTAGCGCAAACATATTCTCTTGAAC ACAAGGGGGAAAGCAATCTTTTCGATCATCTCTTTGAGCTGCTGAATTCTGCCACGGAAACTGATGAAAGTTACCGAAGGGAGTTGGCTCGTTCTACCGG AGCACTTCAGACTTCTGTTAGCCAGCACTTGGCGAAAGAACAGAAACAGgtatttttttcttttccttcacatcacagatgtattatctctgttgttttc tattaacacagatcgaatatttagcattacgcattggcctttattaattacgggttgttcttggcttgttgatagGTGTTCCCCTTACTTATTGAGAAAT TCAAGTATGAGGAGCAAGCTTACATAGTCTGGCGGTTTCTCTGCAGTATTCCTGTGAATATGCTTGCTGTGTTCTTGCCATGGATTTCTTCTTCCATTTC AGTAGATGAAAGCAAGGAGATGCAAACGTGCTTAAAGAAGATAGTTCCAGGCGAGAAGCTCCTTCAGCAGgtaagttttgaattaagatccaactttcta agttgaaagactttggcttgttgattgatattttccttttgaagGTTATTTTCACCTGGCTGGGAGGGAAAAGCAATACCGTGGCTTCGTGTCGCATTGA AGATTCTATGTTCCAGTGCTGTCTAGATTCTTCTAGCAGCATGCTTCCTTGTAAAGCAAGTAGAGAACAGTGCGCATGTGAGGGTTCCAAGATTGGGAAG AGAAAGTACCCAGAGCTTACTAACTTTGGCTCATCTGATACTCTGCACCCAGTTGATGAGATAAAGCTCTGGCACAAGTCAATCAACAAGGAGATGAAAG AAATAGCCGATGAGGCTAGGAAGATTCAGCTGTCTGGAGATTTTTCGGATTTATCGGCATTTGATGAACGCTTACAATATATTGCTGAAGTGTGCATCTT CCATAGgtatttgttgtatcctttcatttacaatgaaaacagaataatctcaattttgctattgtttattggctatcttttgtgggactattcaatgttg atttattgaggtaaataactagatttgttttataaagttgatgttgatggccactaaaacacgtttgccagctgtgatgtgttttactttcaagtgatat ggatgttgtttatcctttactcttctcatgcttaagcacgtttctgcattagagtgttatcattcgaaaaagagttttatcaaatgttcatatctacata caactttttttttcttctgacagagattgaattgtcattggactatttttgagatgatctgttcttttctcgtgcagTCTTGCAGAGGACAAGATCATAT TTCCAGCTGTAGATGGAGAGTTTTCATTTTCTGAAGAGCACGATGAAGAAGAAAATCAGTTTAACGAGTTTCGATGCTTAATTGAAAATATCAAGAGTGC TGGAGCCTCTTCTACTTCCGCTGCCGAATTTTACACTAAGCTGTGCTCACATGCTGATCAAATAATGGAAACTATTCAAAGACACTTCCATAACGAGGAA ATTCAGgtgaactattgcttttaagtgctgtatgatattgtaaacaggtgaaactatgaaagtttggcataagatcatttgatactatatgctatgaaga ttcaagataccaatttcaggatgtcaactaacttgtagtggttgcagGTGCTACCCCTTGCACGAAAGAACTTCAGCTTCAAAAGACAACAAGAACTTCT CTACCAAAGCCTGTGTATAATGCCATTGAGACTAATTGAACGAGTTTTGCCATGGTTGACGGCATCTTTAACAGAAGATGAAGCTAAGAATTTTCTGAAG AACTTGCAAGCTGGAGgtactatctactgtactgccttaaacttaaccttctttcaaattattagctactcacaattttgcataattacatgctttttct tgtggcctcagCACCTAAATCGGATGTTGCTCTCGTTACTCTTTTCTCTGGTTGGGCTTGCAAAGGACGCAAAGCCGGGGAATGCTTGTCTCCAAACGGG AATGGTTTATGCCCTGTGAAAACACTAAGCAACATTAAAGAAGTCAACCTTCAGTCATGTAATGCTTGTGCGTCTGTTCCATGCACGAGTAGGAGTACAA AATCGTGTTGCCAGCATCAAGATAAAAGGCCAGCTAAGCGAACTGCTGTATTGTCTTGTGAAAAAAAAACCACCCCTCACTCGACAGAAGTTGCAAATGG GTGCAAGCCATCTGGAAATGGTAGGTCATGCTGTGTTCCGGATCTCGGAGTTAACAATAATTGTCTGGAACTTGGTTCTCTTCCAGCAGCTAAAGCTATG AGATCTTCTTCGCTAAACTCTGCTGCACCCGCTCTTAATTCCAGCCTCTTTATTTGGGAAATGGATAGTAACAGCTTTGGTACTGGACATGCTGAGCGGC CAGTTGCTACAATATTCAAGTTTCACAAGGCCATAAGCAAAGATCTAGAGTTTCTTGATGTTGAATCTGGAAAGCTCATTGATTGCGATGGAACATTTAT TCGTCAATTTATCGGTCGATTTCACCTACTCTGGGGTTTCTACAAGGCTCATAGTAATGCAGAAGATGACATCCTATTTCCAGCTCTAGAATCGAAGGAG ACACTTCACAATGTCAGTCACTCTTACACGCTCGACCATAAACAGGAGGAGAAGTTGTTTGGAGATATTTATAGTGTCCTTACCGAACTTTCAATTCTTC ATGAGAAGTTACAGAGTGATTCTATGATGGAGGACATAGCTCAAACTGACACTGTTCGGACGGATATCGATAACGGTGACTGCAACAAGAAATACAATGA ACTGGCTACAAAGCTACAGGGGATGTGCAAATCCATTAAAATCACTTTGGATCAGCACATTTTCTTGGAGGAACTGGAGCTTTGGCCTCTATTTGACAAA CACTTCTCCATTCAAGAGCAAGACAAGATTGTGGGTCGTATAATCGGAACAACGGGTGCTGAAGTTCTTCAATCTATGTTACCATGGGTGACGTCTGCCC TTTCTGAAGATGAGCAAAACAGAATGATGGATACCTGGAAGCAGGCAACCAAGAACACAATGTTCGATGAATGGCTTAATGAATGCTGGAAAGGATCACC CGACTCATCCTCAACAGAAACATCCAAACCTAGTCCACAGAAAGgtaaaagcattgcttagctatttctcaccaacttaatatctaacttgtttaatgta accttagatgtttcttctttggacttcataactcatacttaagctggcaactatagtttctctgtgctaagtttgttttgcttatgtcaagtttattttc catatagATAATGATCATCAAGAAATCTTGGACCAAAGTGGTGAACTATTTAAGCCAGGGTGGAAAGATATTTTCCGCATGAACCAGAATGAACTAGAGG CTGAAATCAGGAAGGTCTATCAGGACTCAACACTTGATCCGAGGAGAAAAGATTATCTCGTACAGAATTGGAGGACCAGgtcagatttttttcactattt ccacgcatggatcctttattccacattgtcatgcatacagcatgccagacataaatctagaaccccccaaagagataatacatttccctgtattacttga acttcttttgcaatgcggaagagtataagtggtgctcctgtcctttacagtttcccaatccaaaataacgtgctcagtttattttccactgtgcatgtat atgtgtccttgattgagcaatcttctgatatagagaacctataatctcattcacatgtccctcatacccgaatcctatttgttctagagtaacatttatt ttaaaattcttctgttggtgcatttatcagTCGATGGATTGCGGCTCAGCAAAAGTTACCTAAGGAAGCAGAAACTGCAGTAAATGGTGATGTTGAACTT GGATGTTCCCCGTCTTTTCGGGATCCCGAGAAGCAGATATATGGATGCGAGCATTACAAGCGTAACTGCAAGCTTCGAGCTGCTTGTTGTGATCAGTTGT TCACTTGTAGGTTTTGCCATGACAAAGTAAGCGACCACTCCATGGATAGgtaagatcttatattctaaagccagtttcccctaattaaattgaaacttct ttgttcgtattttttttctctctctgtgatatgtaattttatatttgaaacatattacagAAAATTGGTGACGGAAATGCTCTGTATGCGGTGCCTCAAG GTGCAACCTGTTGGTCCCATCTGCACAACACCTTCATGCGACGGATTCCCAATGGCAAAGCACTATTGCAGTATTTGCAAACTTTTTGATGATGAAAGgt aaacaaaacccaacagtttgatgcataaacgaatcaatttaccactgtcaaaaatcaaacttcagaagctattctaaccgtgagaaacaattatctgcat tcagGGCCGTTTACCACTGTCCATTCTGCAACCTTTGCCGGGTCGGGGAAGGACTAGGAATCGATTTTTTCCATTGCATGACATGTAACTGTTGCCTAGG GATGAAATTAGTAAACCACAAGTGCCTCGAGAAGAGCCTCGAGACAAATTGCCCCATCTGCTGCGAATTTCTTTTCACATCGAGTGAAGCAGTTAGAGCC TTACCATGTGGTCACTACATGCACTCAGCTTGCTTCCAGgtttgcaaatctctctttctctcattaaacttaaattaacttttaacgcctaaaatcaaaa cacttgctgttactctggtctttcagGCTTACACTTGCAGTCACTACACATGTCCAATCTGTGGAAAATCATTAGGAGATATGGCTgtaagatgatcccc gcccctcaagagtgtaacatgcatatcacatcatgcaaatattgtttactgaactgtttcttcttcgtttcttttgcgaactccacagGTTTATTTTGGT ATGCTTGATGCACTGTTAGCTGCAGAAGAACTTCCAGAGGAATACAAAAATCGCTGTCAGgtgagaaacactaaaactgctgcgtcttgactatttcttt tagtctagtcatttcatgacacacatacacaaatgtttcagGACATTCTATGTAATGATTGTGAACGCAAAGGAACTACACGGTTCCATTGGTTGTACCA TAAATGTGGTAGCTGTGGTTCTTACAATACCCGGGTGATCAAGTCCGAAACAATCCCCCCGGACTGCTCAACCTCATCCTGAaaacaccaagaggtttca ctcacttgttactctctttttttctttccttttttcgggttttaccctctgtttcgcacaacaatgtgaagaagcccgttgatagattttttttttgtat agtctctgagatattaagattttgaagagtctttatttaggttaccttactatacattttggcttgaacaaagccaaaaaatttcgtttgtttctggaac atcccataccgtcatcctctttcttccacataatccgctatttgtttttgcattaagctgagactttttctttgaagagtgtaaatagttaacaattttt aatagaaaacttttttccactcttcgtatctgactatactatttcttattgttgatgtcaagaaaaaaaaaatctacacttcagagtttttaaattttcg cgagggaaaataatcagggttggttaaaagaaaacgacatgttttagtttgtttatttaaccgtactatcagaaatcaaactaaaatcgaaaagctgaca aa
Border_1 (71954_LBD)
AAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCT
GGCTTCTTTTTTATTTTTTGCCTTTTATCGTTTTATTAATGTTTATCTGGAAAATATTTAAAAAAAACTGTTAGTAGTATTATACGATCCTTGTAAATTT
TTTTATAGAAAATGAATAAAAGTGCTTGGGGATTGGGTGGGTGTTTCTATACATAGGTTTTGTAGCACGTGGCCATTCACATCGCCACGTCGGATGCTGA
TGCAACCAACCCAGGTTGGCACGTGACCGATTACATCTCGACACGTGCAAGCGTCTTACCTACGAACGCATTTGGTCCGCGAGACATGGACGCTGGTTCT
CGGAGTTAGAAGGAGGGACTCTACTGACTAGGGGCAAAAACGTTATGTAATTGCTTACGTGGAATTCATTAAGCTTTTGTTAAAATGAATTTGCTATTTT
ATATGTTTGAGGTTTAGCTTTTGAGGGAGCACTTTCAAAAGAAAAGATGAATTTGGCTTTGAGATTTTATGAAATAAGATAATGTAAGACAGATTCGAAC
TTGGTTTAAATATTTAGTAATACTAA
| Start of BLAST Alignment: | NT < 276 / 5’ UTR |
| First 15 bp Perfect Match: | NT < 276 / 5’ UTR |
BLAST Details: Query Sequence: 71954_LBD Length: (626 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N MIE15 60550 2389 9.0e-102 1 K18J17 67592 212 0.38 1 T15M6 68103 204 0.69 1 F15O4 51619 203 0.73 1 MIE15 60550 Length = 34,527 Minus Strand HSPs: Score = 2389 (364.5 bits), Expect = 9.0e-102, P = 9.0e-102 Identities = 483/492 (98%), Positives = 483/492 (98%), Strand = Minus / Plus Query: 626 TTAGT-ATTACTAAATATTTAAACCAAGTTCGAATCTGTCTTACATTATCTTATTTCATA 568 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25964 TTAGTCATTACTAAATATTTAAACCAAGTTCGAATCTGTCTTACATTATCTTATTTCATA 26023 Query: 567 AAATCTCAAAGCCAAATTCATCTTTTCTTTTGAAAGTGCTCCCTCAAAAGCTAAACCTCA 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26024 AAATCTCAAAGCCAAATTCATCTTTTCTTTTGAAAGTGCTCCCTCAAAAGCTAAACCTCA 26083 Query: 507 AACATATAAAATAGCAAATTCATTTTAACAAAAGCTTAATGAATTCCACGTAAGCAATTA 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26084 AACATATAAAATAGCAAATTCATTTTAACAAAAGCTTAATGAATTCCACGTAAGCAATTA 26143 Query: 447 CATAACGTTTTTGCCCCTAGTCAGTAGAGTCCCTCCTTCTAACTCCGAGAACCAGCGTCC 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26144 CATAACGTTTTTGCCCCTAGTCAGTAGAGTCCCTCCTTCTAACTCCGAGAACCAGCGTCC 26203 Query: 387 ATGTCTCGCGGACCAAATGCGTTCGTAGGTAAGACGCTTGCACGTGTCGAGATGTAATCG 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26204 ATGTCTCGCGGACCAAATGCGTTCGTAGGTAAGACGCTTGCACGTGTCGAGATGTAATCG 26263 Query: 327 GTCACGTGCCAACCTGGGTTGGTTGCATCAGCATCCGACGTGGCGATGTGAATGGCCACG 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26264 GTCACGTGCCAACCTGGGTTGGTTGCATCAGCATCCGACGTGGCGATGTGAATGGCCACG 26323 Query: 267 TGCTACAAAACCTATGTATAGAAACACCCACCCAATCCCCAAGCACTTTTATTCATTTTC 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 26324 TGCTACAAAACCTATGTATAGAAACACCCACCCAATCCCCAAGCACTTTTATTCATTTTC 26383 Query: 207 TATAAAAAAATTTACAAGGATCGTATAATACTACTAACAGNNNNNNNNAAATATTTTCCA 148 |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 26384 TATAAAAAAATTTACAAGGATCGTATAATACTACTAACAGTTTTTTTTAAATATTTTCCA 26443 Query: 147 GATAAACATTAA 136 |||||||||||| Sbjct: 26444 GATAAACATTAA 26455 K18J17 67592 Length = 64,252 Minus Strand HSPs: Score = 212 (37.9 bits), Expect = 0.48, P = 0.38 Identities = 116/190 (61%), Positives = 116/190 (61%), Strand = Minus / Plus
Border_2 (71954_RBU)
TGCAGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATCAGTGTTTGAAGCAAAATCAAAATCGATATATCAGACAACGC
CTCGACCTTTCTTTCTTTTTTTCCTTCTCATCGTCTCCGTTGAACAACACCACACAAACACCAGAAGAACACCAGATAATTCCCATGGTGAACCGAGCTC
AGATTTGAAAATTGAAGGTCGTAGACGAATCATAAGGAAAGAGAGAAGTGGTTTGAGATTTCTTTTTTGACGGACGAAAACGGAGATAAGCTTTGGGGGA
AATGGCGACGCCGTTACCAGATTTTGAGACGGCGAGAGGCGGCGGAGCAGTGGCGTCTTCTTCAACCACGGTTCTTCCGAGTTCTGTGTCTTCTTCTTCT
TCTTCATCTCGTCCGTTGCCTGTGGCGAATTCGTTCTCGGATGACGCGGAAGAGATTTCTCCGATCCTGATTTTCTTGTTCTTTCATAAGGCAGTATGTA
GTGAGCTTGAAGCTCTTCATAGATTGGCTCTT
| Start of BLAST Alignment: | NT < 234 / 5’ UTR |
| First 15 bp Perfect Match: | NT < 234 / 5’ UTR |
BLAST Details: Query Sequence: 71954_RBU Length: (532 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g18290 68416.t02071 zinc finger protein-related weak a... 1933 9.4e-82 1 >At3g18290 68416.t02071 zinc finger protein-related weak alignment to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING finger) (2 copies) Length = 6331 Plus Strand HSPs: Score = 1933 (296.1 bits), Expect = 9.4e-82, P = 9.4e-82 Identities = 409/465 (87%), Positives = 409/465 (87%), Strand = Plus / Plus Query: 68 AAGCAAAATCAAAATCGATATATCAGACAACGCCTCGACCTTTCTTTCTTTTTTTCCTTC 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80 AAGCAAAATCAAAATCGATATATCAGACAACGCCTCGACCTTTCTTTCTTTTTTTCCTTC 139 Query: 128 TCATCGTCTCCGTTGAACAACACCACACAAACACCAGAAGAACACCAGATAATTCCCATG 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 140 TCATCGTCTCCGTTGAACAACACCACACAAACACCAGAAGAACACCAGATAATTCCCATG 199 Query: 188 GTGAACCGAGCTCAGATTTGAAAATTGAAGGTCGTAGACGAATCATAAGGAAAGAGAGAA 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 200 GTGAACCGAGCTCAGATTTGAAAATTGAAGGTCGTAGACGAATCATAAGGAAAGAGAGAA 259 Query: 248 GTGGTTTGAGATTTCTTTTTTGACGGACGAAAACGGAGATAAGCTTTGGGGGAAATGGCG 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 260 GTGGTTTGAGATTTCTTTTTTGACGGACGAAAACGGAGATAAGCTTTGGGGGAAATGGCG 319 Query: 308 ACGCCGTTACCAGATTTTGAGACGGCGAGAGGCGGCGGAGCAGTGGNNNNNNNNNNNNNN 367 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 ACGCCGTTACCAGATTTTGAGACGGCGAGAGGCGGCGGAGCAGTGGCGTCTTCTTCAACC 379 Query: 368 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCCGTTGCCTGTGGCG 427 |||||||||||||||||| Sbjct: 380 ACGGTTCTTCCGAGTTCTGTGTCTTCTTCTTCTTCTTCATCTCGTCCGTTGCCTGTGGCG 439 Query: 428 AATTCGTTCTCGGATGACGCGGAAGAGATTTCTCCGATCCTGATTTTCTTGTTCTTTCAT 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 440 AATTCGTTCTCGGATGACGCGGAAGAGATTTCTCCGATCCTGATTTTCTTGTTCTTTCAT 499 Query: 488 AAGGCAGTATGTAGTGAGCTTGAAGCTCTTCATAGATTGGCTCTT 532 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500 AAGGCAGTATGTAGTGAGCTTGAAGCTCTTCATAGATTGGCTCTT 544