At1g04635 SYNGENTA 72902
Genomic Sequence (from TAIR)
ctttagccgccgacttggtatcatcaaatcgaggagattcgaagaagcATGGTGGGATTTAAGAACAGATACATGTTAATGGAAGTTTTTCTGGATCCGG ACAAGGATCTTCTCGGAGAAGGAACACCGATCATTCTTACACAATTCAATCTCTCGAAAGCAATCAAAGACAGTATCCTCGTCAATTTCGGCGAGTGTGG TCTAGGTTCGTCTCTCGGTTCCTTCCAAGTGAAATATGTGAATCCAATCACGAAGCTATGCATTGTAAGATCATCAAGAGAAGAACACA◄GACAAGTTTG GTTAGCAATCACATTGGTCAAAAGCATCGGAAACTGTCCGGTGATCTTAAACTTGCTCGATATTAGCGGTTGCATCAGAGCGTGTAGAGACACAGCCTTG AAGTGCGACAAGGAGAAGTTTGAGCAGTGTAGCAAAAGCTTGTCTGAAGAGGAGATTAGGCAGATGAATACTTCTCTTGAGAAGATCAAACTATTGGAAA ACTGAaacttttctagaccttttttccttcgaatttgacccctaagttttgaaattgtacaatctttgtatttttcttaattctgaaatacaaagggata agaaacagcatcattccctgaaaagattgtttgcgatttgaatcactgggtttttatatgttggaattaaaataagagggtgtgaattgttgagatatgt tctagataaggcgtaattctgtgaaaattgaaaacttaagggtacaagtgcaaagtcgttgaattttgaagcttttaat►aaatccaaaatttctaatct ggagagaacctatctctgaggtccaaactcttcggtggaggagaagaactgaaacggtaatctagctcttcaaagcctcttactttaccgattacttgct cttgtaccatgtatacgatcatttatatgggtttttatcggttacggtaatcctccgtgtctttttctttgtgtatgcatgttaagtgttcgataaaata
Border_1 (72902_LB2U)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAC
GCAATGTGTTATTCGGGTCAATGTGTTCTTCTCTTGATGATCTTACAATGCATAGCTTCGTGATTGGATTCACATATTTCACTTGGAAGGAACCGAGAGA
CGAACCTAGACCACACTCGCCGAAATTGACGAGGATACTGTCTTTGATTGCTTTCGAGAGATTGAATTGTGTAAGAATGATCGGTGTTCCTTCTCCGAGA
AGATCCTTGTCCGGATCCAGAAAAACTTCCATTAACATGTATCTGTTCTTAAATCCCACCATGCTTCTTCGAATCTCCTCGATTTGATGATACCAAGTCG
GCGGCTAAAGATATTCTGAACATGTAGTTAGGGCATTTTATATGTAAGAAGAAGAAGAAGATAATCACGTGACTCCACGTGACTTGCTTACTTATGGACT
TGGGTCTTTGAACATATCTGAAATGGGCTTAGTTATAGCCCATTTCATCTCATACGACTCCGTGATTTGCTAACTAATGGGCTTAGTTATATGGTCCTAG
CCTAGTTAATCTCCAACGTTCCCTTCGTTGTTCATCGGAATCCCTAGAACACTCGATTTCAGCAAAATCAAATCGGATTCAGTGATCAAAAGTCAATTTG
GTCGAGAAGAAATTGAGCGTTGAAGATGACGGAGGCGATGATAAGAAATAAGCCAGGAATGGCGAGTGTGAAGGATATGCCGCTGCTTCAGGATGGTCCG
CCACCGGGTGGGTTCGCACCGGTCCGATATGCCCGCCGGATATCCAATACGGGTCCTAGTGCAATGGCCATGTTCCTTGCCGTTTCTGGTGCCTTTGCTT
GGGGAATGTACCAGGTCGGCCAGGGAAACAAAATCCGCAGGTAAGAACGACTTGTAATAGCTCGTTCACATTTCAATTTTTCCTCTNAAA
| Start of BLAST Alignment: | NT 241/ Exon 1 of 1 |
| First 15 bp Perfect Match: | NT 241/ Exon 1 of 1 |
BLAST Details: Query Sequence: 72902_LB2U Length: (1090 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g04630 68414.t00406 expressed protein 1778 1.0e-75 1 At1g04635 68414.t00407 ribonuclease P family protein / Rp... 1385 1.1e-57 1 At2g33220 68415.t03764 expressed protein 960 9.4e-39 1 >At1g04635 68414.t00407 ribonuclease P family protein / Rpp14 family protein contains Pfam profile: PF01900 Rpp14 family Length = 682 Minus Strand HSPs: Score = 1385 (213.9 bits), Expect = 1.1e-57, P = 1.1e-57 Identities = 277/277 (100%), Positives = 277/277 (100%), Strand = Minus / Plus Query: 498 ACTTGGTATCATCAAATCGAGGAGATTCGAAGAAGCATGGTGGGATTTAAGAACAGATAC 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ACTTGGTATCATCAAATCGAGGAGATTCGAAGAAGCATGGTGGGATTTAAGAACAGATAC 60 Query: 438 ATGTTAATGGAAGTTTTTCTGGATCCGGACAAGGATCTTCTCGGAGAAGGAACACCGATC 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ATGTTAATGGAAGTTTTTCTGGATCCGGACAAGGATCTTCTCGGAGAAGGAACACCGATC 120 Query: 378 ATTCTTACACAATTCAATCTCTCGAAAGCAATCAAAGACAGTATCCTCGTCAATTTCGGC 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ATTCTTACACAATTCAATCTCTCGAAAGCAATCAAAGACAGTATCCTCGTCAATTTCGGC 180 Query: 318 GAGTGTGGTCTAGGTTCGTCTCTCGGTTCCTTCCAAGTGAAATATGTGAATCCAATCACG 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 GAGTGTGGTCTAGGTTCGTCTCTCGGTTCCTTCCAAGTGAAATATGTGAATCCAATCACG 240 Query: 258 AAGCTATGCATTGTAAGATCATCAAGAGAAGAACACA 222 ||||||||||||||||||||||||||||||||||||| Sbjct: 241 AAGCTATGCATTGTAAGATCATCAAGAGAAGAACACA 277 >At2g33220 68415.t03764 expressed protein Length = 1266 Plus Strand HSPs: Score = 960 (150.1 bits), Expect = 9.4e-39, P = 9.4e-39 Identities = 242/294 (82%), Positives = 242/294 (82%), Strand = Plus / Plus
Border_2 (72902_LB1D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAASCMRTYDCGCTAG
WCAAATATCGA:TTCAATTCGGCGTTAATTCAGTACATT:AAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATATGTGTCTATGCTATGCT
GCGTCAAAAGCATCGGAAACTGTCCGGTGATCTTAAACTTGCTCGATATTAGCGGTTGCATCAGAGCGTGTAGAGACACAGCCTTGAAGTGCGACAAGGA
GAAGTTTGAGCAGTGTAGCAAAAGCTTGTCTGAAGAGGAGATTAGGCAGATGAATACTTCTCTTGAGAAGATCAAACTATTGGAAAACTGAAACTTTTCT
AGACCTTTTTTCCTTCGAATTTGACCCCTAAGTTTTGAAATTGTACAATCTTTGTATTTTTCTTAATTCTGAAATACAAAGGGATAAGAAACAGCATCAT
TCCCTGAAAAGATTGTTTGCGATTTGAATCACTGGGTTTTTATATGTTGGAATTAAAATAAGAGGGTGTGAATTGTTGAGATATGTTCTAGATAAGGCGT
AAATTCTGTGAAAATTGAAAACTTAAGGGTACAAGTGCAAAGTCGTTGAATTTTGAAGCTTTTAATAAATCCAAAATTTCTAATCTGGAGAGAACCTATC
TCTGAGGTCCAAACTCTTCGGTGGAGGAGAAGAACTGAAACGGTAATCTAGCTCTTCAAAGCCTCTTACTTTACCGATTACTTGCTCTTGGACCATGTAT
ACGATCATTTATATGGGTTTTTATCCGGT
| Start of BLAST Alignment: | NT 730 / Exon 1 of At1g04640 |
| First 15 bp Perfect Match: | NT 730 / Exon 1 of At1g04640 |
BLAST Details: Query Sequence: 72902_LB1D Length: (827 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g04635 68414.t00407 ribonuclease P family protein / Rp... 1896 9.2e-81 1 At1g04640 68414.t00408 biotin/lipoate A/B protein ligase ... 791 4.0e-31 1 At2g35870 68415.t04068 expressed protein 175 0.084 1 At5g59830 68418.t06945 expressed protein 193 0.96 1 >At1g04640 68414.t00408 biotin/lipoate A/B protein ligase family protein similar to lipoyltransferase (LIP2p) [Arabidopsis thaliana] GI:15887052; contains Pfam profile PF03099: Biotin/lipoate A/B protein ligase family Length = 1278 Plus Strand HSPs: Score = 791 (124.7 bits), Expect = 4.0e-31, P = 4.0e-31 Identities = 161/163 (98%), Positives = 161/163 (98%), Strand = Plus / Plus Query: 665 AAATCCAAAATTTCTAATCTGGAGAGAACCTATCTCTGAGGTCCAAACTCTTCGGTGGAG 724 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 AAATCCAAAATTTCTAATCTGGAGAGAACCTATCTCTGAGGTCCAAACTCTTCGGTGGAG 60 Query: 725 GAGAAGAACTGAAACGGTAATCTAGCTCTTCAAAGCCTCTTACTTTACCGATTACTTGCT 784 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 GAGAAGAACTGAAACGGTAATCTAGCTCTTCAAAGCCTCTTACTTTACCGATTACTTGCT 120 Query: 785 CTTGGACCATGTATACGATCATTTATATGGGTTTTTATCCGGT 827 |||| |||||||||||||||||||||||||||||||||| ||| Sbjct: 121 CTTGTACCATGTATACGATCATTTATATGGGTTTTTATC-GGT 162 >At2g35870 68415.t04068 expressed protein Length = 303 Minus Strand HSPs: Score = 175 (32.3 bits), Expect = 0.088, P = 0.084 Identities = 167/302 (55%), Positives = 167/302 (55%), Strand = Minus / Plus