At1g70070 SYNGENTA 73215
Genomic Sequence (from TAIR)
ccaagccaaatttgtatccgcagccgcaacccaaaaataagttgtttcagtttaagttgtctttgttttcttggttgttagtctgtcttgaaaaccatct tttaatcagtaataaagcttgtcattagactatcaaaactaacaataatccgaataacaatctatgaatacgtagttaacacttatagtagtgggatttg gctttctctgcagatgtgcaattatctatttttttattagcaccgataagaaaaaaaaaatattaattttttctttgttattcgcttagttaataatatt aaaacgggcattcttcgaaatatattgtgtacgtaagtgacatcaagcgggtcaataggaacttttcgtagaaaataatccgtttttacatcagacaaaa aaatattcatttatctgagaaaataataattaattgggtgtaatatccaaaagccaaaaaaaaatcaaatcttgaaatgccctgaaaacATGAACACTCT TCCCGTCGTCTCTCTCACAGCTTCTTCTTCCTTCAAATTCTTCCATTTTCCTTCTCTGCACCGTTCTCTCTCTCATTCCCCAAACTTCTCCTTCACCAAA TCCCTTATCCTCAATCCAAACCACCTCTCCTTCAAATCCACCTTAAATTCTCTTTCACCGTCTCAGTCTCAGCTCTACGAGGAAGAAGACGACGAAGAAG AAGAAGAAGAAGACGAAGATGATGATGACGAAGCTGCTGACGAATACGACAATATCTCCGATGAAATTCGGAATAGCGATGACGACGACGACGATGAAGA AACCGAATTCTCCGTGGATTTGCCGACGGAATCAGCTCGGGAACGAGTGGAGTTCCGGTGGCAGAGAGTGGAGAAGCTTCGTAGTCTTGTTAGAGATTTT GGTGTTGAGATGATTGATATCGATGAACTCATTTCAATCTACGATTTTCGAATCGACAAGTTTCAGAGATTGGCTATTGAAGCTTTTCTTAGAGGTTCTT CTGTTGTGGTTTCTGCTCCGACTAGTAGTGGCAAGACTTTGATTGCTGAAGCTGCTGCTGTTTCCACGGTGGCTAAAGGTCGCCGGTTGTTCTACACTAC ACCTCTTAAAGCACTCTCTAATCAGAAGTTTCGTGAGTTTAGGGAGACATTTGGGGATGATAATGTTGGTCTACTCACAGGTGACTCTGCTATTAACAAA GATGCTCAGATTGTGATTATGACTACAGAGATTCTCCGTAACATGTTGTATCAAAGgtattttgcaactgcagctctctctgtgtgtattttatatggtt tgctcaggagcttctttttaacctcaatttttgtgttgaaatcttttttagTGTTGGAATGGCTTCTTCAGGAACTGGACTTTTTCATGTTGATGCCATT GTTTTGGATGAGGTTCACTATTTAAGTGATATATCTAGGGGAACTGTGTGGGAAGAGATAgtgagttttttttcccactgtttctcttctttcctccaaa ggctttatctgttgagtgtttctaagttggtttctgtgtttcaaatacgatcagGTCATTTATTGTCCAAAGGAGGTTCAACTTATATGCCTATCAGCTA CAGTTGCAAATCCGGATGAATTAGCTGGTTGGATTGGTGAGgtgagtctgtggacatttttcctataggaatagcttttctttatcgtgttcatatcata aggagttataacaatgtacgtagtgccttgttcatcgtctcatttatcttctattgttaagcaacttatatattgttttgctgatgaagtatctcaattt ctagtaatcttgtactaatacacggttatttaagatgctttcgtgttttgttctcagATACATGGTAAAACTGAGTTGGTAACATCGACAAGACGCCCAG TTCCATTAACTTGGTACTTTTCAACAAAACATTCTTTATTACCTCTGCTTGATGAGAAAGGGATAAACGTGAATAGgtaactggttcaaatctgtacttt tatcaccaacatttattgtaaaatctttctctttgataataattggaggatgctttttaattggagcagGAAGCTTTCTCTCAATTATTTGCAACTGTCT GCCTCAGAAGCTAGATTCCGTGATGATGATGACGGGTATAGGAAAAGGAGGTCAAAGAAACGAGGAGGTGATACCAGCTACAACAACCTTGTGAACGTAA CTGATTATCCTCTTTCAAAGAATGAGATAAACAAGATTCGTCGATCACAGgtcttacattatgctttctaacaaccctaacaaactaggcatttgtcgtt tcttatatatttgaatatgatttttaacttctcatgataatttaatgactgctgagttttgatttctagGTACCTCAAATTAGCGACACATTATGGCATC TCCAGGGGAAAAATATGTTACCAGCGATATGGTTCATTTTTAACCGTAGAGGATGTGATGCAGCTGTACAGTATGTTGAAAATTTTCAGCTTTTAGATGA TTGCGAGAAGAGTGAGGTTGAGTTGGCCTTGAAGAAGTTTCGCGTTCTTTATCCAGATGCAGTGAGAGAGAGTGCAGAGAAAGGACTGCTTAGGGGAATT GCTGCTCATCATGCAGGTTGTCTACCTCTTTGGAAATCTTTCATTGAGGAACTTTTTCAGCGAGGACTTGTTAAGGTTGTCTTTGCTACTGAGACACTTG CTGCTGGAATAAACATGCCGGCTAGAACGGCTGTTATCTCGTCTCTTTCAAAAAAGGCTGGTAATGAACGAATAGAGTTGGGTCCTAACGAATTGTACCA GATGGCTGGGCGTGCTGGACGCAGAGGCATCGATGAAAAGGGCTACACTGTGCTGGTTCAGACTGCTTTTGAAGGCGCTGAAGAGTGCTGCAAACTTGTC TTTGCTGGAGTTAAACCTCTCGTGTCACAATTTACTGCTTCATATGGCATGGTACTGAATCTGGTAGCTGGTTCAAAAGTTACTCGTAAATCAAGTGGAA CTGAGGCCGGGAAAGTCTTACAAGCAGGGAGAAGTCTGGAAGAAGCCAAGAAATTAGTTGAGAAGAGTTTTGGAAACTATGTGAGCAGCAATGTGACGGT TGCTGCGAAGCAGGAACTTGCTGAAATCGACAATAAGATCGAGATTCTGTCATCTGAAATAAGTGATGAAGCAATAGATAAGAAGAGTAGGAAACTTCTT TCAGCGAGGGATTACAAGGAGATCACTGTACTTAAAGAAGAGCTACGGGAAGAGAAACGCAAGCGTGCTGAACAACGAAGAAGAATGGAACTCGAAAGGT TCTTAGCTCTAAAACCGCTCTTAAAAGGGATGGAAGAGGGGAACTTACCATTTATTTGTTTGGAGTTCAAGGATTCTGAAGGGAGGGAGCAGTCAGTCCC TGCTGTTTACTTGGGGCATATTGATTCATTTCAGGGTTCCAAACTTCAGAAGATGATGTCTTTGGATGAGTCTTTTGCGTTAAACTTAATCGAGGATGAG CTGGCGGCTGATGAACCTGGAAAGCCTAATGTTAAACCGTCTTACTATGTGGCCCTTGGCTCTGATAACTCATGGTATCTCTTTACTGAGAAGTGGGTTA GGACTGTCTACAGAACTGGTTTCCCTAACATTGCTCTAGCGCTTGGAGATGCTTTGCCTCGAGAAATCATGAAGAATCTCCTGGATAAAGCAGATATGCA GTGGGATAAACTAGCTGAATCTGAACTTGGAAGTTTGTGG◄AG◄ATTGGAAGGATCTCTAGAGAC►ATGGTCCTGGAGTTTAAACGTACCTGTCCTAAGC AGCCTTTCTGACGAAGATG►AGGTGTTACATATGTCCGAAGAGTATGATAACGCGGCGCAAAAATACAAGGAACAAAGGAGCAAAATTTCGCGTTTGAAG AAGAAGATGTCCCGGTCAGAAGGGTTCAGAGAATATAAGAAAATTCTAGAGAATGCTAACTTGACGGTTGAGAAGATGAAACGGCTCAAGGCGAGATCGA GACGCCTTATAAACCGTTTAGAGCAGATTGAACCGTCTGGTTGGAAAGATTTCATGCGCATAAGCAACGTGATTCACGAAAGCAGAGCATTGGACATTAA TACACACTTGATATTTCCTCTGGGAGAAACAGCTGCTGCAATCCGAGGAGAAAACGAGCTTTGGCTTGCAATGGTGTTGCGGAACAAAGCCCTGGTGGAT CTCAAGCCTCCTCAACTAGCTGGTGTATGTGCAAGTTTAGTTTCAGAAGGCATAAAAGTTCGACCTTGGAGAGACAACAACTATATTTACGAGCCATCTG ATACAGTAGTAGACATGGTCAATTTCTTAGAAGACCAAAGAAGCTCTCTTATAAAGCTTCAAGAGAAGCACGAGGTTATGATTCCATGTTGTCTGGACGT TCAGTTCTCTGGTATGGTTGAAGCTTGGGCTTCTGGATTAAGTTGGAAAGAAATGATGATGGAATGTGCAATGGACGAAGGCGATCTTGCTCGCCTGTTA CGACGCACAATTGATCTCTTAGCTCAGATTCCTAAGTTGCCTGATATTGACCCAGTCCTGCAACGTAGTGCAGCAGCTGCAGCAGATATCATGGACCGTC CACCAATTAGTGAGCTTGCCGGTTAAagtgaaccccacattagctctgtctttagtgagacccattggcaaaaaaaacacaagagcctgggatgtgcaag aagtgcatatgtaagaattggggatacaagaacaaatttttcattcagatgattaatgttggaaagaataggagcaacaaagaagaaattttaattaatg ttacaacatacaaaatgcttatatacacaatgggaaacaagacttcaaggcttgggcagttaatccgtttagtattccttcgattttccccctccctccc tttttattttctgtgagaatacaacagggaccagaggcagtaacagaagtaagagccatcttacatttcttctcttctgacaaagctcaatgctgagtat ggcaaccttttatctctcaaaaagtgcgaagttgctctattcccgagcgttttctggtagtaagtgacagatgtcattgaccggtgagaagtttttgata tctt
Border_1 (73215_LB1D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTWYCRRKACAYTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAAACTTC
CAAGTTCAGATTCAGCTAGTTTATCCCACTGCATATCTGCTTTATCCAGGAGATTCTTCATGATTTCTCGAGGCAAAGCATCTCCAAGCGCTAGAGCAAT
GTTAGGGAAACCAGTTCTGTAGACAGTCCTAACCCACTTCTCAG:TAAAGAGATACCATGAGTTATCAGAGCCAAGGGCCACATAGTAAGACGGTTTAAC
ATTAGGCTTTCCAGGTTCATCAGCCGCCAG:CTCATCCTCGATTAAGTTTAACG:CAAAAGACTCATCCAAAGACATCATCTTCTGAAGTTTGGAACCCT
GAAATGAATCAATATGCCCCAAGTAAACAGCAGGGACTGACTGC:TCCCTCCCTTCA:GAATCCTTGAACTCCAAACAAATAAATGGTAAGTTCCCCTCT
TCCATCCCTTTTAAGAGCGGTTTTAGAGCTAAGAACCTTTCGAGTTCCATTCTTCTTCGTTGTTCAGCACGCTTGCGTTTCTCTTCCCGTAGCTCTTCTT
TAAGTACAGTGATCTCCTTGTAATCCCTCGCTGAAAGAAGTTTCCTACTCTTCTTATCTATTGCTTCATCACTTATTTCAGATGACAGAATCTCGATCTT
ATTGTCGATTTCAGCAAGTTCCTGCTTCGCAGCAACCGTCACATTGCTGCTCACATAGTTTCCAAAACTCTTCTCAACTAATTTCTTGGCTTCTTCCAGA
CTTCTCCCTGCTTGTAAGACTTTCCCGGCCTCA
Start of BLAST Alignment: | NT 3253 / Exon 6 of 6 |
First 15 bp Perfect Match: | NT 3251 / Exon 6 of 6 |
BLAST Details: Query Sequence: 73215_AbBU Length: (771 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g70070 68414.t07384 DEAD/DEAH box helicase, putative s... 2431 1.0e-105 1 >At1g70070 68414.t07384 DEAD/DEAH box helicase, putative similar to SP|P35207 Antiviral protein SKI2 {Saccharomyces cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 4181 Plus Strand HSPs: Score = 2431 (370.8 bits), Expect = 1.0e-105, P = 1.0e-105 Identities = 531/588 (90%), Positives = 531/588 (90%), Strand = Plus / Plus Query: 167 ATGGTCNNTGGAGTTTANAACGNNCNCTGTCCNAAACCNGCCTTTCTGNGNNAACANNAG 226 |||||| ||||||||| |||| | |||||| || | ||||||||| || | || Sbjct: 3323 ATGGTCC-TGGAGTTTA-AACGTAC-CTGTCCTAAGC-AGCCTTTCTGA-CGAAGATGAG 3377 Query: 227 GTGTTACATATGTCCTNAGANGTATGATNACCCGGCGCNAANATNCAAGGAACAAAGGAG 286 ||||||||||||||| ||| ||||||| || |||||| || || ||||||||||||||| Sbjct: 3378 GTGTTACATATGTCCGAAGA-GTATGATAACGCGGCGCAAAAATACAAGGAACAAAGGAG 3436 Query: 287 CAAAATTTCGCGTTTNAAGAAGAANATGTCCCGGTCAGAAGGGTTCAGAGAATATAAGAA 346 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 3437 CAAAATTTCGCGTTTGAAGAAGAAGATGTCCCGGTCAGAAGGGTTCAGAGAATATAAGAA 3496 Query: 347 AATTCTANAGAATGCTANCTTGACGGTTGAGAAGATGAANCGGCTCAAGGCGAGATCGAG 406 ||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||| Sbjct: 3497 AATTCTAGAGAATGCTAACTTGACGGTTGAGAAGATGAAACGGCTCAAGGCGAGATCGAG 3556 Query: 407 ACNCCTNATAAACCGTTTAGAGCAGATTGAACCGTCTGGTTGGAAAGATTTCATGCGCAT 466 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3557 ACGCCTTATAAACCGTTTAGAGCAGATTGAACCGTCTGGTTGGAAAGATTTCATGCGCAT 3616 Query: 467 AAGCAACGTGATTCACGAAAGGCNGAGCATTGGACATTAATACACACTTGATATTTCCTC 526 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct: 3617 AAGCAACGTGATTCACGAAAG-CAGAGCATTGGACATTAATACACACTTGATATTTCCTC 3675 Query: 527 TGGGAGAAACAGCTGNNNCAATCCGAGGAGAAAACGAGCTTTGGCNTGCAATGGTGTTGC 586 ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct: 3676 TGGGAGAAACAGCTGCTGCAATCCGAGGAGAAAACGAGCTTTGGCTTGCAATGGTGTTGC 3735 Query: 587 GGAACAAANGCCCTGGTGNATCTCAAGGCCTCCTCAACTAGCTGGTGTATGTGCAAGTTT 646 |||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 3736 GGAACAAA-GCCCTGGTGGATCTCAAG-CCTCCTCAACTAGCTGGTGTATGTGCAAGTTT 3793 Query: 647 AGTTTCAGAAGGCATAAAAGTTCNACCNTGGAGATACNGCAACTATATTNACNAGCCATC 706 ||||||||||||||||||||||| ||| |||||| || |||||||||| || ||||||| Sbjct: 3794 AGTTTCAGAAGGCATAAAAGTTCGACCTTGGAGAGACAACAACTATATTTACGAGCCATC 3853 Query: 707 TGATACAGTAGTAGNACATGGTCATTTTGGGANAAGCACCAAAANAGC 754 |||||||||||||| ||||||||| ||| | ||| |||||| ||| Sbjct: 3854 TGATACAGTAGTAG-ACATGGTCAATTTCTTAGAAG-ACCAAAGAAGC 3899
Border_2 (73215_AbBU)
CATNNANNGCGNGNTTTTGNTCNCNANCTNCCCGNTCGGGNAGCCGTTGGCCTGGTNGGTTTAACACCCACNANATCGGGGATCNTTATCATATAAAACC
CNCCNCANANATCCGGGGAAAANGTNCCCCCANTGTGTCTATTAATTTGTCTAAGGCGTCAACCTAATGGTCNNTGGAGTTTANAACGNNCNCTGTCCNA
AACCNGCCTTTCTGNGNNAACANNAGGTGTTACATATGTCCTNAGANGTATGATNACCCGGCGCNAANATNCAAGGAACAAAGGAGCAAAATTTCGCGTT
TNAAGAAGAANATGTCCCGGTCAGAAGGGTTCAGAGAATATAAGAAAATTCTANAGAATGCTANCTTGACGGTTGAGAAGATGAANCGGCTCAAGGCGAG
ATCGAGACNCCTNATAAACCGTTTAGAGCAGATTGAACCGTCTGGTTGGAAAGATTTCATGCGCATAAGCAACGTGATTCACGAAAGGCNGAGCATTGGA
CATTAATACACACTTGATATTTCCTCTGGGAGAAACAGCTGNNNCAATCCGAGGAGAAAACGAGCTTTGGCNTGCAATGGTGTTGCGGAACAAANGCCCT
GGTGNATCTCAAGGCCTCCTCAACTAGCTGGTGTATGTGCAAGTTTAGTTTCAGAAGGCATAAAAGTTCNACCNTGGAGATACNGCAACTATATTNACNA
GCCATCTGATACAGTAGTAGNACATGGTCATTTTGGGANAAGCACCAAAANAGCCNTTAGGNGTCCTTCNA
Start of BLAST Alignment: | NT 3274 / Exon 6 of 6 |
First 15 bp Perfect Match: | NT 3327 / Exon 6 of 6 |