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At3g49170 SYNGENTA 74313

Genomic Sequence (from TAIR)

CTCCATagctcagagaaagagggaagtaaagagaaactgattccaagtctgggttttgtgatatctataaattagggtttatgaactatgtatgtaattt
gataaattaatagttttgtgtcttattgataatttccacaaacttaagggactataatgtaaattttgtgtgatattgataattaacagtaacggatcgt
ttagattggagaacaATGGCGATGATAAGCTTTTCGTTTCCATCTCCCGCCAAACTTCCGATTAAATCTCAACCGTCCGTTTCAAATCGGATCAACGTCG
CCGACCGTTTGATTCTCCGTCATCTCAATGCCGGAGATCTTCGTGGAGCGGTTTCAGCTCTTGATCTCATGGCTCGTGATGGGATTCGTCCTATGGACTC
AGTCACTTTCTCTTCACTTCTCAAATCTTGTATCCGAGCACGCGATTTTCGTCTCGGGAAACTCGTACACGCTCGATTAATCGAGTTTGATATCGAGCCT
GATTCGGTTCTCTACAATTCGTTGATTAGCTTGTATTCGAAATCTGGAGATTCGGCGAAAGCTGAAGATGTGTTTGAGACTATGAGAAGATTTGGTAAGC
GAGATGTTGTTTCGTGGAGTGCGATGATGGCTTGTTACGGTAACAACGGAAGAGAATTAGATGCAATTAAGGTTTTTGTTGAGTTTCTGGAGTTAGGTTT
GGTGCCTAATGATTATTGTTACACGGCGGTGATACGAGCTTGTTCGAATTCGGATTTTGTTGGAGTTGGGAGAGTGACTTTAGGGTTTTTGATGAAGACT
GGGCATTTTGAATCTGATGTGTGTGTGGGTTGTTCTTTGATTGACATGTTTGTGAAAGGAGAGAATAGCTTTGAGAATGCGTATAAGGTGTTTGATAAAA
TGTCTGAACTAAATGTTGTTACTTGGACTTTGATGATTACTCGGTGTATGCAGATGGGGTTTCCTAGGGAAGCGATTAGGTTTTTCTTGGATATGGTTTT
AAGTGGATTTGAATCAGATAAGTTCACACTAAGCTCTGTGTTTTCGGCTTGTGCTGAGTTGGAGAACTTGTCTTTGGGAAAGCAGTTGCATTCTTGGGCT
ATTAGATCAGGGCTTGTGGATGATGTTGAATGTAGTTTAGTTGATATGTATGCGAAATGTTCTGCGGATGGTTCGGTAGATGATTGCAGGAAGGTGTTTG
ATAGAATGGAGGATCATAGTGTTATGTCGTGGACGGCATTGATCACTGGTTATATGAAAAACTGTAATCTCGCTACAGAGGCTATTAATCTCTTTAGTGA
AATGATAACGCAAGGTCATGTTGAGCCAAATCATTTCACTTTCTCGAGTGCATTCAAGGCGTGTGGAAATCTTTCGGATCCACGGGTAGGTAAACAGGTT
CTTGGTCAAGCTTTCAAAAGAGGGCTTGCTTCGAATAGCAGTGTTGCAAACTCGGTTATCAGCATGTTTGTTAAATCTGACAGGATGGAAGATGCTCAGA
GAGCTTTTGAGTCACTTTCTGAGAAGAACTTGGTTTCGTATAATACATTTCTTGACGGAACATGCAGGAACTTGAATTTTGAGCAAGCATTTAAGCTTTT
AAGTGAGATCACTGAGAGAGAATTAGGTGTTAGCGCTTTCACATTTGCTAGCTTGTTGAGTGGAGTTGCAAATGTTGGTTCAATAAGAAAAGGCGAGCAA
ATCCATTCTCAGGTGGTTAAACTCGGGCTCTCGTGCAATCAACCCGTCTGCAATGCTTTGATCTCTATGTATTCCAAATGTGGAAGCATTGACACAGCTT
CCCGAGTCTTCAATTTTATGGAAAATCGTAATGTCATCTCGTGGACTTCAATGATCACAGGTTTCGCTAAACACGGATTCGCTATAAGGGTACTCGAAAC
ATTCAACCAAATGATAGAAGAAGGGGTGAAGCCAAATGAGGTCACTTATGTTGCAATCTTATCGGCATGCAGCCATGTTGGTTTGGTCTCCGAAGGATGG
AGACATTTCAATTCAATGTATGAAGACCACAAGATCAAACCTAAGATGGAACACTATGCTTGTATGGTTGATCTTCTATGTCGAGCCGGGCTTCTCACAG
ACGCATTTGAGTTCATTAACACAATGCCCTTCCAAGCCGATGT◄TTTAGTATGGCGT►ACGTTTCTTGGAGCTTGCAGAGTTCACAGTAACACAGAACTC
GGAAAGTTGGCTGCGAGGAAGATCTTAGAACTTGATCCGAATGAGCCTGCAGCTTATATACAGCTCTCAAACATATACGCTTGTGCAGgtatctatataa
ttcaaacacaatcagataaaactctttcttctactgatctaccttgtgtgaaagtgacactttgttgaatatttctatgtagGGAAATGGGAAGAATCTA
CGGAGATGAGGAGGAAGATGAAAGAGAGAAACTTGGTTAAAGAAGGAGGTTGCAGTTGGATAGAAGTGGGAGATAAAATTCATAAGTTCTACGTAGGTGA
TACAGCTCACCCGAATGCTCACCAAATATATGATGAATTGGATCGGTTAATTACAGAAATAAAACGCTGCGGATATGTTCCTGATACGGATCTTGTTCTT
CACAAGCTAGAGGAGGAGAATGATGAGGCGGAGAAGGAGAGGTTACTATATCAGCACAGCGAGAAAATTGCGGTTGCGTTTGGGCTTATAAGCACGTCGA
AATCTAGACCGGTTAGGGTGTTCAAGAACTTACGGGTCTGCGGAGATTGCCATAACGCGATGAAATATATATCGACAGTCTCTGGTAGAGAGATTGTGTT
GAGGGATTTGAATCGTTTTCATCATTTTAAAGATGGGAAATGTTCTTGTAATGATTATTGGTGAatggtgactttgagatttagatacacaaatgaggct
tttctattcaatgttattttaaatcttgaggattttgggttcaatgtgatcgttctttttaaaaataaataaagagaagcattctaatttatttaagtta
ttacagttgaagatgattcagacaagttttaagatactagtggtattagcaatatccggttttccgatgatggaatcccgtatccaaagcaatttgggat
caacaagcaataagagtattgaatatttggctttgaattgccggaaacacagtgcggttttgacgaattttggagctattggagatggaaaaccctcaaa
ca

Border_1 (74313_RBU)


TGCAG:AGCTCGCTTGAGCTTGG:ATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATCAGTGTTTGACAGGGCATTGTGTGTTACATCGGAGATGAG
GAGGAAGAATCTGCAACTTTCCGAGTTCTGTGTTACATCGGCTTGGAAGGGCATTGTGTTAATGAACTCAAATGCGTCTGTGAGAAGCCCGGCTCGACAT
AGAAGATCAACCATACAAGCATAGTGTTCCATCTTAGGTTTGATCTTGTGGTCTTCATACATTGAATTGAAATGTCTCCATCCTTCGGAGACCAAACCAA
CATGGCTGCATGCCGATAAGATTGCAACATAAGTGACCTCATTTGGCTTCACCCCTTCTTCTATCATTTGGTTGAATGTTTCGAGTACCCTTATAGCGAA
TCCGTGTTTAGCGAAACCTGTGATCATTGAAGTCCACGAGATGACATTACGATTTTCCATAAAATTGAAGACTCGGGAAGCTGTGTCAATGCTTCCACAT
TTTGGAATACATAGAGATCAAAGCATTGCAGACGGGTTGATTGCACGAGAGCCCGAGTTTAACCACCTGAGAATGGATTTGCTCGCCTTTTCTTATTGAA
CCAACATTTGCAACTCCACTCAACAAGCTAGCAAATGTGAAAGCGCTTACACCTAATTCTCTCTCAGNGATCTCACTTAAAAGCTTAAATGCTTGCTCAA
AATTCAAGGTTCCTGCATGTTCCGTCAAGAAATGNATTATACGAAACCAAGNTCTTNTCAAAAAGNG

Start of BLAST Alignment:	NT 1928 / Exon 1 of 2
First 15 bp Perfect Match:	NT 1928 / Exon 1 of 2

BLAST Details:
Query Sequence: 74313_RBU 
Length: (765 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At3g49170 68416.t04991 pentatricopeptide (PPR) repeat-con...  3082  6.3e-135  1
At2g22070 68415.t02465 pentatricopeptide (PPR) repeat-con...   704  3.3e-26   1
At2g20540 68415.t02276 pentatricopeptide (PPR) repeat-con...   666  9.5e-25   1
At3g15130 68416.t01696 pentatricopeptide (PPR) repeat-con...   660  2.8e-24   1


>At3g49170 68416.t04991 pentatricopeptide (PPR) repeat-containing protein
           contains INTERPRO:IPR002885 PPR repeats
        Length = 2690

  Minus Strand HSPs:

 Score = 3082 (468.5 bits), Expect = 6.3e-135, P = 6.3e-135
 Identities = 624/633 (98%), Positives = 624/633 (98%), Strand = Minus / Plus

Query:   765 CNCTTTTTGANAAGANCTTGGTTTCGTATAATNCATTTCTTGACGGAACATGCAGGAACC 706
             | |||| ||| |||| |||||||||||||||| |||||||||||||||||||||||||| 
Sbjct:  1298 CACTTTCTGAGAAGAACTTGGTTTCGTATAATACATTTCTTGACGGAACATGCAGGAAC- 1356

Query:   705 TTGAATTTTGAGCAAGCATTTAAGCTTTTAAGTGAGATCNCTGAGAGAGAATTAGGTGTA 646
             ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct:  1357 TTGAATTTTGAGCAAGCATTTAAGCTTTTAAGTGAGATCACTGAGAGAGAATTAGGTGTT 1416

Query:   645 AGCGCTTTCACATTTGCTAGCTTGTTGAGTGGAGTTGCAAATGTTGGTTCAATAAGAAAA 586
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1417 AGCGCTTTCACATTTGCTAGCTTGTTGAGTGGAGTTGCAAATGTTGGTTCAATAAGAAAA 1476

Query:   585 GGCGAGCAAATCCATTCTCAGGTGGTTAAACTCGGGCTCTCGTGCAATCAACCCGTCTGC 526
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1477 GGCGAGCAAATCCATTCTCAGGTGGTTAAACTCGGGCTCTCGTGCAATCAACCCGTCTGC 1536

Query:   525 AATGCTTTGATCTCTATGTATTCCAAAATGTGGAAGCATTGACACAGCTTCCCGAGTCTT 466
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct:  1537 AATGCTTTGATCTCTATGTATTCCAAA-TGTGGAAGCATTGACACAGCTTCCCGAGTCTT 1595

Query:   465 CAATTTTATGGAAAATCGTAATGTCATCTCGTGGACTTCAATGATCACAGGTTTCGCTAA 406
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1596 CAATTTTATGGAAAATCGTAATGTCATCTCGTGGACTTCAATGATCACAGGTTTCGCTAA 1655

Query:   405 ACACGGATTCGCTATAAGGGTACTCGAAACATTCAACCAAATGATAGAAGAAGGGGTGAA 346
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1656 ACACGGATTCGCTATAAGGGTACTCGAAACATTCAACCAAATGATAGAAGAAGGGGTGAA 1715

Query:   345 GCCAAATGAGGTCACTTATGTTGCAATCTTATCGGCATGCAGCCATGTTGGTTTGGTCTC 286
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1716 GCCAAATGAGGTCACTTATGTTGCAATCTTATCGGCATGCAGCCATGTTGGTTTGGTCTC 1775

Query:   285 CGAAGGATGGAGACATTTCAATTCAATGTATGAAGACCACAAGATCAAACCTAAGATGGA 226
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1776 CGAAGGATGGAGACATTTCAATTCAATGTATGAAGACCACAAGATCAAACCTAAGATGGA 1835

Query:   225 ACACTATGCTTGTATGGTTGATCTTCTATGTCGAGCCGGGCTTCTCACAGACGCATTTGA 166
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1836 ACACTATGCTTGTATGGTTGATCTTCTATGTCGAGCCGGGCTTCTCACAGACGCATTTGA 1895

Query:   165 GTTCATTAACACAATGCCCTTCCAAGCCGATGT 133
             |||||||||||||||||||||||||||||||||
Sbjct:  1896 GTTCATTAACACAATGCCCTTCCAAGCCGATGT 1928


>At2g22070 68415.t02465 pentatricopeptide (PPR) repeat-containing protein
           contains INTERPRO:IPR002885 PPR repeats
        Length = 2463

  Minus Strand HSPs:

 Score = 704 (111.7 bits), Expect = 3.3e-26, P = 3.3e-26
 Identities = 396/652 (60%), Positives = 396/652 (60%), Strand = Minus / Plus

Border_2 (74313_LBD)


AATCGAATTC:ATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCACG
TTTCTTGGAGCTTGCAGAGTTCACAGTAACACAGAACTCGGAAAGTTGGCCTGCGAGGAAGATCTTAGAACTTGATCCGAATGAGCCTGCAGC:TTATAT
ACAG:CTCTCAAACATATACGC:TTGTGCAGGTATCTATATAATTCAAACACAATCAGATAAAACTCTTTCTTCTACTGATCTACCTTGTGTGAAAGTGA
CACTTTGTTGAATATTTCTATGTAGGGAAATGGGAAGAATCTACGGAGATGAGGAGGAAGATGAAAGAGAGAAACTTGGTTAAAGAAGGAGGTTGCAGTT
GGATAGAAGTGGGAGATAAAATTCATAAGTTCTACGTAGGTGATACAGCTCACCCGAATGCTCACCAAATATATGATGAATTGGATCGGTTAATTACAGA
AATAAAACGCTGCGGATATGTTCCCTGATACGGATCTTGTTCTTCACAAGCTAGAGGAGGAGAATGATGAGGCGGAGAAGGAGAAGGTTACTATATCAGC
ACAGGCGAGAAAATTGCSGGTTGCGTTTTGGGGCTTTATAAAGCCMCGTCGAAATCTAGACCSGGKTAGGGGTGTTCAAGNAACTTACGGGTCTGCGGAG
AATTGCCATAACGCCGATGAAATATATATCGACCAGTYTSTKKGAAGANAAGATTGNGTTGG

Start of BLAST Alignment:	NT 1941 / Exon 1 of 2
First 15 bp Perfect Match:	NT 1941 / Exon 1 of 2

BLAST Details:
Query Sequence: 74313_LBD 
Length: (758 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At3g49170 68416.t04991 pentatricopeptide (PPR) repeat-con...  2585  1.8e-112  1
At2g22070 68415.t02465 pentatricopeptide (PPR) repeat-con...   301  8.9e-08   2
At1g68930 68414.t07233 pentatricopeptide (PPR) repeat-con...   251  2.8e-07   2
At3g49710 68416.t05050 pentatricopeptide (PPR) repeat-con...   302  1.6e-05   1


>At3g49170 68416.t04991 pentatricopeptide (PPR) repeat-containing protein
           contains INTERPRO:IPR002885 PPR repeats
        Length = 2690

  Plus Strand HSPs:

 Score = 2585 (393.9 bits), Expect = 1.8e-112, P = 1.8e-112
 Identities = 533/541 (98%), Positives = 533/541 (98%), Strand = Plus / Plus

Query:    97 ACGTTTCTTGGAGCTTGCAGAGTTCACAGTAACACAGAACTCGGAAAGTTGGCCTGCGAG 156
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct:  1942 ACGTTTCTTGGAGCTTGCAGAGTTCACAGTAACACAGAACTCGGAAAGTTGGC-TGCGAG 2000

Query:   157 GAAGATCTTAGAACTTGATCCGAATGAGCCTGCAGCTTATATACAGCTCTCAAACATATA 216
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2001 GAAGATCTTAGAACTTGATCCGAATGAGCCTGCAGCTTATATACAGCTCTCAAACATATA 2060

Query:   217 CGCTTGTGCAGGTATCTATATAATTCAAACACAATCAGATAAAACTCTTTCTTCTACTGA 276
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2061 CGCTTGTGCAGGTATCTATATAATTCAAACACAATCAGATAAAACTCTTTCTTCTACTGA 2120

Query:   277 TCTACCTTGTGTGAAAGTGACACTTTGTTGAATATTTCTATGTAGGGAAATGGGAAGAAT 336
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2121 TCTACCTTGTGTGAAAGTGACACTTTGTTGAATATTTCTATGTAGGGAAATGGGAAGAAT 2180

Query:   337 CTACGGAGATGAGGAGGAAGATGAAAGAGAGAAACTTGGTTAAAGAAGGAGGTTGCAGTT 396
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2181 CTACGGAGATGAGGAGGAAGATGAAAGAGAGAAACTTGGTTAAAGAAGGAGGTTGCAGTT 2240

Query:   397 GGATAGAAGTGGGAGATAAAATTCATAAGTTCTACGTAGGTGATACAGCTCACCCGAATG 456
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2241 GGATAGAAGTGGGAGATAAAATTCATAAGTTCTACGTAGGTGATACAGCTCACCCGAATG 2300

Query:   457 CTCACCAAATATATGATGAATTGGATCGGTTAATTACAGAAATAAAACGCTGCGGATATG 516
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2301 CTCACCAAATATATGATGAATTGGATCGGTTAATTACAGAAATAAAACGCTGCGGATATG 2360

Query:   517 TTCCCTGATACGGATCTTGTTCTTCACAAGCTAGAGGAGGAGAATGATGAGGCGGAGAAG 576
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2361 TTCC-TGATACGGATCTTGTTCTTCACAAGCTAGAGGAGGAGAATGATGAGGCGGAGAAG 2419

Query:   577 GAGAAGGTTACTATATCAGCACAGGCGAGAAAATTGCSGGTTGCGTTTTGGGGCTTTATA 636
             |||| ||||||||||||||||||| |||||||||||| ||||||||||  |||||| |||
Sbjct:  2420 GAGA-GGTTACTATATCAGCACAG-CGAGAAAATTGC-GGTTGCGTTT--GGGCTT-ATA 2473

Query:   637 A 637
             |
Sbjct:  2474 A 2474

 Score = 528 (85.3 bits), Expect = 3.8e-18, P = 3.8e-18
 Identities = 160/208 (76%), Positives = 166/208 (79%), Strand = Plus / Plus