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At4g21130 SYNGENTA 74963

Genomic Sequence (from TAIR)

tgtctttggtttgtttagattttcaatatgttaatagattttcttcacatttgcatcaaacatgataattaaggtctggtttaatccttctcaagtaaaa
tagatgtgtgacaaaagtatgtcgtatttgaaaccaaaaatcaacttattcgagttaccaacgttttaatttatgaattcacaagatacttttttccatt
taatttgtttatgagtaagttgattaatttgtgggttaggcccatcatgaagtaaacctattaacctagtattgtttgcggggaaagttagggcaatttg
tggatttcttatttaagacagaacaaagaagaaaacaaactctgtatttttttctccatcgccagtaaaccctgcgttctctctcgctcgcttgtgtgtg
atagagagggagagaagaATGAAACTCGAGAAGAAGAAAGGTATTGGGGCGAAGAGAAGAGGGAAAAAGAGTTCCATCGATCATGATCCTTTCTTAGAGG
AAGAGACAGAGAAGCGGAGAAAATTCAATTACGATGATGATGATGATATCGAATCTGTAGAATCTGAAGAGGAAGGGAAGGTTGGTGAGGAGGTGGAGGA
TGAGTTTGCTCATGAGACGGTAGGCGAGAAACGAAAGAGACTGGCGGAGGATACTTTGAATAGAATCGAAGAGGCGAAACAGAGAGAGCATGAAGAAGAT
AACGAGGAAGATGATGATTTTAGAGATTCGCTTGTGGCAAAGACTCTAATGCAGGAACAGCTCGAGAAGAGTGGTCGTGTTCGGAGAGCCAATGCATTGA
Ggtaatgaagaagaaagttgttatttttcatatttgagtccatgagctaggtttttatatttgaaaccactcctcaggacttgtttaactacgtattcat
agacttcaaaaatgcttgtgatttaggttttatggaattttaggaattagtttacattagtttttatataatggcttggagattgtttgtactgatactc
tgattaaactttaccgtgtcagGGTTCAAGATCTACAGAGTAGCGATAAGTTTCGTGTTATAGTCAAACACCAACATTCTGTTACAGGAGTAGCTCTATC
AGATGATGATTCAAGAGGGTTCTCAGTTTCGAAAGACGGTACTATTCTGCATTGGGATGTATCTTCTGGTAAAAGTGATGAGTACAAATGGCCAAGCGAT
GAAGTTTTGAAGTCTCACGGGTTAAAGTTCCAGGAATCTTGGTATACAAGACATAACAAACAATCTCTAGCATTAGCTGTTAGCTCTGATGGCCGGTATT
TAGCGACTGGAGGAGTTGATTGCCATGTTCATTTGTGGGATATCCGAACACGAGAGCATGTCCAGGTAAACAAGCTTAAAAATAATCAAGTTAAGGATTC
TGTTCATTGTgtcttgctctcagcctcttttattagatatgtatctattgcagGCTTTTACAGGTCACTGTGGCATTGTTTCTAGTCTATGCTTTAGAGA
AGGAACTGCAGAACTCTTTTCTGGTTCATATGATGGAACATTAAGTATATGGAATGCAGAACATAGAACATATATAGAATCATGTTTTGGACACCAGTCT
GAACTTCTATCCATTGATGCTCTAGGGAGGGAGCGTGTTCTCAGTGTTGGACGCGATAGAACAATGCAGTTATATAAGGTAGGTATTGTGgtctgtttga
tttgtttgtctatatctaagcacgatttttgtttcctatcagGTTCCCGAGTCTACTCGGTTGATCTATCGAGCTTCCGAATCAAATTTTGAGTGCTGCT
GTTTTGTTAATAGTGATGAGTTTTTGTCCGGATCAGATAATGGAAGTATTGCACTTTGGTCCATTTTGAAAAAGAAACCAGTGTTTATCGTTAACAATGC
TCACCACGTGATAGCTGATCATGATTCTGTTAACCATAACTGTACACCAGCATGTTCTTGGGTCAGTTCAGTTGCTGTCTGTAGAGGTAGCGAGCTTGCT
GCATCGGGAGCTGGTAATGGTTGTGTGCGTTTATGGGGTGTTGAAAGTGGATCTAGTGCTATACAACCTTTATACGAGCTTCCACTTGTAAgtttgtttt
cctaggtcggctcttattgctatttgtgtgttgcatctgttactgacatccaatgcttatgacctttttgcagCCTGGGTTTGTGAACTCTTTAGCTTTT
GCAAAATCTGGTCGGTTTCTGAT►CGCTGGTGTTGGACAGgtac►aca◄ttttcctttaaccagacatatata◄ttcgtctctgtgaatgccaatcttaa
ctgtaactttgggtatatggcagGAACCGCGGCTCGGAAGATGGGGTTGCTTAAAATCTGCGCAGAACGGTGTTGCAATACATCCCTTAAGGCTTTCATG
AAGGGATCTCAATTTAGATTGCAACTTATTTTAGAACTTCAGTTATGTAGAGGTACTACAGCTATATTTTTGACATGGAAGGGAAGAAAGAGAACATATA
GAGGCTCTAATTAAacaaaatcggaaagtcccattcctgctttatgcttaaaagtcttgttttattgatcaaacaacatatacaatctgatctttacgca
tagaggaactttgttttagtggtattcaaaagatcctaaagaatactagaattgataaaaatttgtggtttaagaactcagatacacaaacttgattatt
ttaccagagatttggactcaataggtctacaaaaatagctagtgaactaaggaaacatagaagccaagaggtccctagatgaagtctaatgactacgatt
ctctctagactagctacctcagctttcaaactatgatgatccttggagaatcgtggtctttgtagctttaggactcttgccattgcactctactggaccg
ggta

Border_1 (74963_RB)


TCACNCTGCTGTCTGGGCTTTTGGCTGTGACGCACAGTTCATAGAGATAACCTTCACCCGGTTGCCAGAGGTGCGGATTCACCACTTGCAAAGTCCCGCT
AGTGCCTTGTCCAGTTGCAACCACCTGTTGATCCGCATCACGCAGTTCAACGCTGACATCACCATTGGCCACCACCTGCCAGTCAACAGACGCGTGGTTA
CAGTCTTGCGCGACATGCGTCACCACGGTGATATTGTCAAGCGTACATTTTCCTTTAACCAGACATATATATTCGTCTCTGTGAATGCCAATCTTAACTG
TAACTTTGGGTATATGGCAGGAACCGCGGCTCGGAAGATGGGGTTGCTTAAAATCTGCGCAGAACGGTGTTGCAATACATCCCTTAAGGCTTTCATGAAG
GGATCTCAATTTAGATTGCAACTTATTTTAGAACTTCAGTTATGTAGAGGTACTACAGCTATATTTTTGACATGGAAGGGAAGAAAGAGAACATATAGAG
GCTCTAATTAAACAAAATCGGAAAGTCCCATTCCTGCTTTATGCTTAAAAGTCTTGTTTTATTGATCAAACAACATATACAATCTGATCTTTACGCATAG
AGGAACTTTGTTTTAGTGGTATTCAAAAGATCCTAAAGAATACTAGAATTGAT

Start of BLAST Alignment:	NT 1805 / Exon 5 of 6
First 15 bp Perfect Match:	NT 1825 / Intron 5 of 5

BLAST Details:
Query Sequence: 74963_RB 
Length: (653 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At4g21130 68417.t02872 transducin family protein / WD-40 ...  1348  1.7e-56   1
At4g05410 68417.t00765 transducin family protein / WD-40 ...   327  4.7e-07   1


>At4g21130 68417.t02872 transducin family protein / WD-40 repeat family protein
           contains 6 WD-40 repeats (PF00400); some similarity to a group of
           proteins with homology to mammalian apoptosis regulators identified
           in zebrafish (PUBMED:10917738)Apaf-1(gi:7677507)
        Length = 2092

  Plus Strand HSPs:

 Score = 1348 (208.3 bits), Expect = 1.7e-56, P = 1.7e-56
 Identities = 278/287 (96%), Positives = 278/287 (96%), Strand = Plus / Plus

Query:   226 CGGTGATATTGT-CAAGCGTACATTTTCCTTTAACCAGACATATATATTCGTCTCTGTGA 284
             || || | |||  || |   ||||||||||||||||||||||||||||||||||||||||
Sbjct:  1806 CGCTGGTGTTGGACAGGTACACATTTTCCTTTAACCAGACATATATATTCGTCTCTGTGA 1865

Query:   285 ATGCCAATCTTAACTGTAACTTTGGGTATATGGCAGGAACCGCGGCTCGGAAGATGGGGT 344
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1866 ATGCCAATCTTAACTGTAACTTTGGGTATATGGCAGGAACCGCGGCTCGGAAGATGGGGT 1925

Query:   345 TGCTTAAAATCTGCGCAGAACGGTGTTGCAATACATCCCTTAAGGCTTTCATGAAGGGAT 404
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1926 TGCTTAAAATCTGCGCAGAACGGTGTTGCAATACATCCCTTAAGGCTTTCATGAAGGGAT 1985

Query:   405 CTCAATTTAGATTGCAACTTATTTTAGAACTTCAGTTATGTAGAGGTACTACAGCTATAT 464
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1986 CTCAATTTAGATTGCAACTTATTTTAGAACTTCAGTTATGTAGAGGTACTACAGCTATAT 2045

Query:   465 TTTTGACATGGAAGGGAAGAAAGAGAACATATAGAGGCTCTAATTAA 511
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  2046 TTTTGACATGGAAGGGAAGAAAGAGAACATATAGAGGCTCTAATTAA 2092


>At4g05410 68417.t00765 transducin family protein / WD-40 repeat family protein
           contains 6 WD-40 repeats (PF00400); U3 snoRNP-associated 55-kDa
           protein, Homo sapiens,  gb:NP_004695;  Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) [Podospora anserina]
        Length = 2696

  Plus Strand HSPs:

 Score = 327 (55.1 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 85/105 (80%), Positives = 85/105 (80%), Strand = Plus / Plus

Border_2 (74963_LB1)


GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATYTCSATAY
WCCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTGTACCTGTCCAACACC
AGCGATCAGAAACCGACCAGATTTTGCAAAAGCTAAAGAGTTCACAAACCCAGGCTGCAAAAAGGTCATAAGCATTGGATGTCAGTAACAGATGCNACAC
ACAAATAGCAATAAGAGCCGACCTAGGAAAACAAACTTACAAGTGGAAGCTNGTATAAAGGTTGTATAGCACTAGATCCACTTTCAACACCCCATAAACG
CACACAACCATTACCAGCTCCCTATGCT

Start of BLAST Alignment:	NT 1852 / Intron 5 of 5
First 15 bp Perfect Match:	NT 1828 / Intron 5 of 5

BLAST Details:
Query Sequence: 74963_LB1 
Length: (428 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At4g21130 68417.t02872 transducin family protein / WD-40 ...  1214  1.9e-50   1
At4g05410 68417.t00765 transducin family protein / WD-40 ...   323  8.4e-09   1


>At4g21130 68417.t02872 transducin family protein / WD-40 repeat family protein
           contains 6 WD-40 repeats (PF00400); some similarity to a group of
           proteins with homology to mammalian apoptosis regulators identified
           in zebrafish (PUBMED:10917738)Apaf-1(gi:7677507)
        Length = 2092

  Minus Strand HSPs:

 Score = 1214 (188.2 bits), Expect = 1.9e-50, P = 1.9e-50
 Identities = 258/272 (94%), Positives = 258/272 (94%), Strand = Minus / Plus

Query:   427 GCATAGGGAGCTGGTAATGGTTGTGTGCGTTTATGGGGTGTTGAAAGTGGATCTAGTGCT 368
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1583 GCATCGGGAGCTGGTAATGGTTGTGTGCGTTTATGGGGTGTTGAAAGTGGATCTAGTGCT 1642

Query:   367 ATACAACCTTTATACNAGCTTCCACTTGTAAGTTTGTTTTCCTAGGTCGGCTCTTATTGC 308
             ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1643 ATACAACCTTTATACGAGCTTCCACTTGTAAGTTTGTTTTCCTAGGTCGGCTCTTATTGC 1702

Query:   307 TATTTGTGTGTNGCATCTGTTACTGACATCCAATGCTTATGACCTTTTTGCAGCCTGGGT 248
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1703 TATTTGTGTGTTGCATCTGTTACTGACATCCAATGCTTATGACCTTTTTGCAGCCTGGGT 1762

Query:   247 TTGTGAACTCTTTAGCTTTTGCAAAATCTGGTCGGTTTCTGATCGCTGGTGTTGGACAGG 188
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1763 TTGTGAACTCTTTAGCTTTTGCAAAATCTGGTCGGTTTCTGATCGCTGGTGTTGGACAGG 1822

Query:   187 TACACAAATTGACGCTTAGACA-ACTTA-ATA 158
             ||||||  ||  |  |||  || || || |||
Sbjct:  1823 TACACATTTTC-CT-TTAACCAGACATATATA 1852


>At4g05410 68417.t00765 transducin family protein / WD-40 repeat family protein
           contains 6 WD-40 repeats (PF00400); U3 snoRNP-associated 55-kDa
           protein, Homo sapiens,  gb:NP_004695;  Vegetatible incompatibility
           protein HET-E-1 (SP:Q00808) [Podospora anserina]
        Length = 2696

  Minus Strand HSPs:

 Score = 323 (54.5 bits), Expect = 8.4e-09, P = 8.4e-09
 Identities = 119/170 (70%), Positives = 119/170 (70%), Strand = Minus / Plus