At1g30610 SYNGENTA 75549
Genomic Sequence (from TAIR)
catttctcttacggctctttccttcatattcacatcaaatataatattattatttattttagcgttatattttataacaaaaagatcattgttcttgtct tttatttcatttttggcccattcaatatttaatatggaccgaagacacaaaactaccacggtttaaccaaataaagcatgcaatattgcaatagcctcaa acgcaggcttaagcccaataacaagttggaatgtgtacgatctgtcacacataaaaaacaacgtcccgtttctatattcataaaaactacacctcgttag tttgttttaaagaaacgtcaagtagttttattcgcttagccacgtcggacgttgacgatagccgatagggttcaacgacgatttgcctctgatgataatt tcgaacttcgagtgaattgcagaaaaaaatcagtagagctttagtaaggatacaaaaATGGCGGTGACGATTTCGACGAATGCTTTCGTAAATGCATCGC TTTTAGATGAAAGTCGGAATTCTTTCTGGAGACCATTGTTTCATCAGCCATACTATAATTGCCGACGAGTCGTTCGTCTTAATTCGAGGAAATTGAATTC AAAGGTAATGTTTTGCTTGAATTTGAACACGAAGGAGGTTGGTTTGCAAAAACCCGGTGATAAAGGTTTTGAATTCAAACCCAGTTTTGATCAGTACCTG CAAATCATGGAATCGGTTAAAACAGCAAGGAAGAAGAAGAAATTCGACAGATTGAAAGTTGAGGAAGATGATGGTGGAGGTGGGAATGGTGATAGTGTTT ATGAAGTGAAAGATATGAAGATTAAGAGTGGTGAGCTAAAAGATGAAACTTTCAGGAAGAGATACTCAAGGCAGGAGATTGTAAGTGATAAACGTAATGA GAGAGTTTTCAAGAGGAATGGAGAAATTGAAAATCATAGAGTGGCTACAGATTTGAAATGGAGTAAGAGTGGTGAATCTTCAGTGGCTCTGAAATTGAGT AAGAGTGGTGAATCTTCAGTGACTGTGCCTGAAGATGAGAGTTTCAGGAAAAGGTACTCTAAGCAGGAGTATCACCGTTCCTCTGATACATCGAGAGGGA TTGAAAGAGGTTCGAGAGGTGATGAATTGGATCTTGTTGTTGAAGAAAGGAGAGTTCAGAGAATAGCCAAAGATGCAAGATGGAGTAAAAGTCGTGAATC TTCAGTGGCTGTGAAATGGAGTAATAGTGGTGAATCTTCAGTGACTATGCCTAAAGATGAGAGCTTTAGGAGAAGATACTCTAAGCAGGAGCATCACCGT TCCTCTGATACATCCAGAGGGATTGCAAGAGGTTCAAAAGGTGATGAATTGGAGCTTGTTGTTGAAGAAAGGAGAGTTCAGAGAATAGCCAAAGATGTAA GATGGAGTAAGAGTGATGAATCTTTAGTGCCTGTGTCAGAAGATGAGAGTTTCAGGAGAGGGAATCCGAAGCAGGAGATGGTGAGGTATCAGCGTGTCTC TGATACATCGAGAGGGATTGAGAGAGGTTCCAAAGGAGATGGATTGGATCTTCTTGCTGAAGAAAGGCGGATTGAGAGATTAGCCAATGAGAGGCATGAG ATAAGAAGTAGCAAATTGAGTGGAACCAGGAGAATTGGTGCTAAGAGAAATGATGATGATGATGATAGCTTGTTTGCCATGGAAACTCCTGCCTTTAGGT TTTCTGATGAGTCCAGTGACATAGTGGACAAGCCAGCTACTTCACGAGTCGAAATGGAAGACAGAATCGAGAAGTTAGCAAAAGTgtatgtgtttatgct attaactagatttggttcatgttcttagattacatagaagacaaatattaggaggtaaatcatgaattttgatttggttatgtgctaatgcagatgaaat tagggagtgagattaatacatttcttatgcaattattatcatactcagctgaatttatgttaaggaagtttatttcactagGTTGAATGGTGCAGACATC AATATGCCTGAGTGGCAGTTTTCCAAGGCGATCAGGAGTGCAAAAATCAGATATACGGATTACACAGTAATGAGACTGATCCACTTTCTAGGGAAACTAG GAAACTGGAGACGAGTTCTTCAAGTCATTGAGTGGCTTCAAAGGCAAGACCGTTACAAATCTAAC◄AAGAT►AAGgtaaata►ttttactgactactcta aaagtgagctatggatatatt◄gcattgggagccaggttgatttcacttacagaagtccagaatctctttttttaaacgtaatgctgacaaaaatattac cattttggatccagAATCATCTATACAACTGCACTAAATGTTCTTGGTAAATCAAGGAGGCCTGTGGAAGCTCTCAATGTATTCCACGCTATGCTGgtaa aacccttgtgccatgcttgtatatgttcttgttgctttgatataaattataaaattaagttaatctttttgttttcttcgccagTTACAAATTTCATCAT ATCCGGATATGGTAGCATACCGTTCAATTGCAGTCACACTTGGACAAGCTGGGCATATCAAGGAACTCTTCTATGTGATTGACACAATGAGGTCTCCACC TAAAAAGAAGTTCAAGCCAACAACACTTGAAAAATGGGATCCCCGGCTTGAACCAGATGTTGTTGTTTACAATGCGgtcagtagtttataattatctcat tcttatgaatatatatagcttacacttattctcggatacttatgtatagtcactcgcctgatgccaatgctggacatctaaccacagGTGCTCAACGCAT GTGTTCAACGAAAGCAATGGGAAGGAGCATTCTGGGTATTGCAACAGTTGAAGCAACGAGGGCAAAAACCTTCTCCTGTAACCTATGGCCTCATCATGGA GgtgaaatatctcttcttatcataacaattattatttcatttcaacgctattgatgagtagtgagtctgtatttgtgtctaagcagGTAATGTTAGCATG TGAGAAGTACAATTTAGTTCATGAATTCTTCAGGAAGATGCAGAAATCTTCTATCCCTAATGCTCTAGCATATAGAGgtattttgtgaactctttattct tttcctttagattattagtatttgaattccccactgaagagtaaaccatttgtacctgtgaatcagTTCTTGTTAATACTCTATGGAAAGAAGGTAAAAG CGACGAGGCCGTACATACGGTTGAGGATATGGAAAGCCGTGGTATTGTTGGATCAGCTGCTCTTTACTACGACCTTGCTCGCTGTCTATGTAGCGCAGGA AGGTGTAATGAAGGGCTCAATATGGTAAATTTTGTAAATCCTGTAGTCCTTAAGCTTATCGAGAATTTGATTTACAAAGCTGATCTTGTTCATACCATCC AATTTCAGCTTAAGAAGATATGTAGAGTTGCAAATAAACCTCTCGTGGTGACTTACACTGGCCTGATCCAAGCATGCGTCGACTCGGGAAACATCAAGAA TGCAGCTTACATCTTCGATCAGATGAAGAAGGTCTGCAGCCCTAACCTAGTCACTTGCAACATAATGCTAAAAGCTTATCTACAAGGCGGATTGTTTGAA GAAGCAAGGGAACTTTTCCAGAAGATGTCAGAAGACGGAAATCATATAAAAAACAGCTCGGATTTCGAATCAAGAGTATTGCCAGACACGTACACGTTCA ACACGATGCTAGACACGTGTGCTGAACAAGAAAAGTGGGATGATTTTGGTTATGCGTATCGGGAGATGTTGCGTCATGGATACCATTTCAATGCGAAACG CCATCTCAGAATGGTACTTGAAGCTAGCAGAGCAGGAAAGgtattaaaaaaaaaaaaatgagacaaattgaaacatttttgattggaaatgttatgttat catctggtctgaacaatctcttgcgtttgtgtgtgtgtgtgtgtgtgtgtgacagGAGGAGGTGATGGAAGCGACATGGGAACACATGAGACGAAGTAAT AGAATTCCGCCATCGCCTCTAATCAAAGAAAGATTCTTCAGGAAACTCGAGAAAGGCGATCATATTTCGGCTATATCATCTCTTGCTGATCTTAATGGAA AAATTGAGGAGACTGAGTTACGAGCATTTTCAACTTCCGCATGGTCCAGAGTCTTGTCCCGATTTGAGCAAGATTCAGTTTTGAGGTTAATGGACGATGT GAACAGACGCCTAGGTTCGAGAAGTGAGTCTTCGGATTCGGTTTTGGGGAATCTATTGAGTTCTTGTAAAGATTATCTGAAGACCAGAACACATAACTTG TAAgttagctatttgccaatctaatgttataagaatgaatatatatataaatggtatcgatcaaatatgagaatgtcagttattttgatgatctaataag tatggatagatgcatggtgcttgcaagcaaacccataatatggatattgtaatggagagagcaaagattgctactagaattcaaaaataattgtgtaatt ttggaatgtgaaggggctaaagtacgtattattctcaagccacctaaaaagactaattagacaaaagagacgtgaagaagtagaaaaattgcatgttgga agaacgatacaagagagtcaacgtgcatggagtcgttggtcgctttgcttcataacaatgcaattgcaaacttgtctaatgtagtgaagtcaaacacaca taaa
Border_1 (75549_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGA:TTCA:TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATGTGT
TATTAAACGTTCGGTAGTTAGATTTGTAACGGTCTTGCCTTTGAAGCCACTCAATGACTTGAAGAACTCGTCTCCAGTTTCCTAGTTTCCCTAGAAAGTG
GATCAGTCTCATTACTGTGTAATCCGTATATCTGATTTTTGCACTCCTGATCGCCTTGGAAAACTGCCACTCAGGCATATTGATGTCTGCACCATTCAAC
CTAGTGAAATAAACTTCCTTAACATAAATTCAGCTGAGTATGATAATAATTGCATAAGAAATGTATTAATCTCACTCCCTAATTTCATCTGCATTAGCAC
ATAACCAAATCAAAATTCATGATTTACCTCCTAATATTTGTCTTCTATGTAATCTAAGAACATGAACCAAATCTAGTTAATAGCATAAACACATACACTT
TTGCTAACTTCTCGATTCTGTCTTCCATTTCGACTCGTGAAGTAGCTGGCTTGTCCACTATGTCACTGGACTCATCAGAAAACCTAAAGGCAGGAGTTTC
CATGGCAAACAAGCTATCATCATCATCATCATTTCTCTTAGCACCAATTCTCCTGGTTCCACTCAATTTGCTACTTCTTATCTCATGCCTCTCATTGGCT
AATCTCTCAATCCGCCTTTCTTCAGCAAGAAGATCCAATCCATC
| Start of BLAST Alignment: | NT 1761 / Intron 2 of 7 |
| First 15 bp Perfect Match: | NT 1708 / Exon 2 of 8 |
BLAST Details: Query Sequence: 75549_LB1 Length: (842 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g30610 68414.t03356 pentatricopeptide (PPR) repeat-con... 3153 2.7e-138 1 At1g55040 68414.t05760 zinc finger (Ran-binding) family p... 219 0.20 1 At5g44180 68418.t05033 homeobox transcription factor, put... 219 0.21 1 At1g21840 68414.t02450 expressed protein weak similarity ... 210 0.36 1 >At1g30610 68414.t03356 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 3842 Minus Strand HSPs: Score = 3153 (479.1 bits), Expect = 2.7e-138, P = 2.7e-138 Identities = 657/684 (96%), Positives = 657/684 (96%), Strand = Minus / Plus Query: 842 GATGGATTGGATCTTCTTGCTGAAGAAAGGCGGATTGAGAGATTAGCCAATGAGAGGCAT 783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1081 GATGGATTGGATCTTCTTGCTGAAGAAAGGCGGATTGAGAGATTAGCCAATGAGAGGCAT 1140 Query: 782 GAGATAAGAAGTAGCAAATTGAGTGGAACCAGGAGAATTGGTGCTAAGAGAAATGATGAT 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 GAGATAAGAAGTAGCAAATTGAGTGGAACCAGGAGAATTGGTGCTAAGAGAAATGATGAT 1200 Query: 722 GATGATGATAGCTTGTTTGCCATGGAAACTCCTGCCTTTAGGTTTTCTGATGAGTCCAGT 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1201 GATGATGATAGCTTGTTTGCCATGGAAACTCCTGCCTTTAGGTTTTCTGATGAGTCCAGT 1260 Query: 662 GACATAGTGGACAAGCCAGCTACTTCACGAGTCGAAATGGAAGACAGAATCGAGAAGTTA 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1261 GACATAGTGGACAAGCCAGCTACTTCACGAGTCGAAATGGAAGACAGAATCGAGAAGTTA 1320 Query: 602 GCAAAAGTGTATGTGTTTATGCTATTAACTAGATTTGGTTCATGTTCTTAGATTACATAG 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1321 GCAAAAGTGTATGTGTTTATGCTATTAACTAGATTTGGTTCATGTTCTTAGATTACATAG 1380 Query: 542 AAGACAAATATTAGGAGGTAAATCATGAATTTTGATTTGGTTATGTGCTAATGCAGATGA 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1381 AAGACAAATATTAGGAGGTAAATCATGAATTTTGATTTGGTTATGTGCTAATGCAGATGA 1440 Query: 482 AATTAGGGAGTGAGATTAATACATTTCTTATGCAATTATTATCATACTCAGCTGAATTTA 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1441 AATTAGGGAGTGAGATTAATACATTTCTTATGCAATTATTATCATACTCAGCTGAATTTA 1500 Query: 422 TGTTAAGGAAGTTTATTTCACTAGGTTGAATGGTGCAGACATCAATATGCCTGAGTGGCA 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1501 TGTTAAGGAAGTTTATTTCACTAGGTTGAATGGTGCAGACATCAATATGCCTGAGTGGCA 1560 Query: 362 GTTTTCCAAGGCGATCAGGAGTGCAAAAATCAGATATACGGATTACACAGTAATGAGACT 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1561 GTTTTCCAAGGCGATCAGGAGTGCAAAAATCAGATATACGGATTACACAGTAATGAGACT 1620 Query: 302 GATCCACTTTCTAGGGAAACTAGGAAACTGGAGACGAGTTCTTCAAGTCATTGAGTGGCT 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1621 GATCCACTTTCTAGGGAAACTAGGAAACTGGAGACGAGTTCTTCAAGTCATTGAGTGGCT 1680 Query: 242 TCAAAGGCAAGACCGTTACAAATCTAACTACCGAACGTTTAATAACACATTGTGGTGTAA 183 |||||||||||||||||||||||||||| | || || |||| | || | Sbjct: 1681 TCAAAGGCAAGACCGTTACAAATCTAACAAGATAAGGTA-AATATTTTACTGACTACTCT 1739 Query: 182 ACAAATTGACGCT-TAGACAACTT 160 | ||| ||| ||| | || | || Sbjct: 1740 A-AAAGTGA-GCTATGGATATATT 1761 >At1g55040 68414.t05760 zinc finger (Ran-binding) family protein contains Pfam PF00641: Zn-finger in Ran binding protein and others; contains Prosite PS00018: EF-hand calcium-binding domain; similar to Zinc finger protein 265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus musculus} Length = 4240 Minus Strand HSPs: Score = 219 (38.9 bits), Expect = 0.22, P = 0.20 Identities = 263/459 (57%), Positives = 263/459 (57%), Strand = Minus / Plus
Border_2 (75549_LB2)
TATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACAT
TAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCCGTCATTGAGTGGTTTCAAAGGCAATTTGTTTTAC
TGACTACTCTAAAAGTGAGCTATGGATATATTGCATTGGGAGCCAGGTTGATTTCACTTACAGAAGTCCAGAATCTCTTTTTTTAAACGTAATGCTGACA
AAAATATTACCATTTTGGATCCAGAATCATCTATACAACTGCACTAAATGTTCTTGGTAAATCAAGGAGGCCTG:GGAAGCTCTCAATGTATTCCACGCT
ATGCTGGTAAAACCCTTGTGCCATGCTTGTATATGTTCTTGTTGCTTTGATATAAATTATAAAATTAAGTTAATCTTTTTGTTTTCTTCGCCAGTTACAA
ATTTCATCATATCCGGATATGGTAGCATACCGTTCAATTGCAGTCACACTTGGACAAGCTGGGCATATCAAGGAACTCTTCTATGTGATTGACACAATGA
GGTCTCCACCTAAAAAGAAGTTCAAGCCAACAACACTTGAAAAATGGGATCCCCGGCTTGAACCAGATGTTGNTGNTTACAATGCGGTCAGTAGTTTATA
ATTATCTCATTCTTATGAATATATATAGCTTACACTTATTCT
| Start of BLAST Alignment: | NT 1713 / Exon 2 of 8 |
| First 15 bp Perfect Match: | NT 1723 / Intron 2 of 7 |
BLAST Details: Query Sequence: 75549_LB2 Length: (741 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g30610 68414.t03356 pentatricopeptide (PPR) repeat-con... 2724 6.5e-119 1 At3g22730 68416.t02573 F-box family protein contains Pfam... 193 0.89 1 >At1g30610 68414.t03356 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 3842 Plus Strand HSPs: Score = 2724 (414.8 bits), Expect = 6.5e-119, P = 6.5e-119 Identities = 552/559 (98%), Positives = 552/559 (98%), Strand = Plus / Plus Query: 184 AAGGCAATTTGTTTTACTGACTACTCTAAAAGTGAGCTATGGATATATTGCATTGGGAGC 243 |||| || | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1714 AAGGTAAATA-TTTTACTGACTACTCTAAAAGTGAGCTATGGATATATTGCATTGGGAGC 1772 Query: 244 CAGGTTGATTTCACTTACAGAAGTCCAGAATCTCTTTTTTTAAACGTAATGCTGACAAAA 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1773 CAGGTTGATTTCACTTACAGAAGTCCAGAATCTCTTTTTTTAAACGTAATGCTGACAAAA 1832 Query: 304 ATATTACCATTTTGGATCCAGAATCATCTATACAACTGCACTAAATGTTCTTGGTAAATC 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1833 ATATTACCATTTTGGATCCAGAATCATCTATACAACTGCACTAAATGTTCTTGGTAAATC 1892 Query: 364 AAGGAGGCCTG-GGAAGCTCTCAATGTATTCCACGCTATGCTGGTAAAACCCTTGTGCCA 422 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1893 AAGGAGGCCTGTGGAAGCTCTCAATGTATTCCACGCTATGCTGGTAAAACCCTTGTGCCA 1952 Query: 423 TGCTTGTATATGTTCTTGTTGCTTTGATATAAATTATAAAATTAAGTTAATCTTTTTGTT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1953 TGCTTGTATATGTTCTTGTTGCTTTGATATAAATTATAAAATTAAGTTAATCTTTTTGTT 2012 Query: 483 TTCTTCGCCAGTTACAAATTTCATCATATCCGGATATGGTAGCATACCGTTCAATTGCAG 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2013 TTCTTCGCCAGTTACAAATTTCATCATATCCGGATATGGTAGCATACCGTTCAATTGCAG 2072 Query: 543 TCACACTTGGACAAGCTGGGCATATCAAGGAACTCTTCTATGTGATTGACACAATGAGGT 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2073 TCACACTTGGACAAGCTGGGCATATCAAGGAACTCTTCTATGTGATTGACACAATGAGGT 2132 Query: 603 CTCCACCTAAAAAGAAGTTCAAGCCAACAACACTTGAAAAATGGGATCCCCGGCTTGAAC 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2133 CTCCACCTAAAAAGAAGTTCAAGCCAACAACACTTGAAAAATGGGATCCCCGGCTTGAAC 2192 Query: 663 CAGATGTTGNTGNTTACAATGCGGTCAGTAGTTTATAATTATCTCATTCTTATGAATATA 722 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2193 CAGATGTTGTTGTTTACAATGCGGTCAGTAGTTTATAATTATCTCATTCTTATGAATATA 2252 Query: 723 TATAGCTTACACTTATTCT 741 ||||||||||||||||||| Sbjct: 2253 TATAGCTTACACTTATTCT 2271 >At3g22730 68416.t02573 F-box family protein contains Pfam PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box protein interaction domain; similar to hypothetical protein GB:AAD25583 from [Arabidopsis thaliana] Length = 1119 Minus Strand HSPs: Score = 193 (35.0 bits), Expect = 2.2, P = 0.89 Identities = 181/314 (57%), Positives = 181/314 (57%), Strand = Minus / Plus