At4g29860 SYNGENTA 75602
Genomic Sequence (from TAIR)
GAGAATCAGTGAGAAGACAGTCATTGGAGATGGGAGAGTGAAGGAAGGGAGCTTGAGACGAAGACGTGGTGGTCGGAGGAAGGAGAAAGGGATGATACGG AGAATGTGGAAGATCGGATCGATTGAGGATTCATTTTCGTCGGAGCCGGTGGCTAGGGTTTGTGAATCTGATCTCGGAGCCATtttcgtcggattcttca gcaattagctcttcgttctcttattatgtgagtgaaacagtttcagagttggtttgtttggaaacttggatattgttatccgctatatgaatacatttgc acattgtgccgttttagaaaaaagttaatattaaacgacacgtagtttttgatataagggagagtttcaaaggctttctctttctcggtgttcctgttgt taaagtctgagacttggattcgattaagttgtgtgttcgcttggtttctctattacaagagtttggttttgtgtagtagttgaatcagagATGAGTAAGA GACCTCCGCCTGATCCAGTGGCTGTGCTTAGAGGGCACCGTCACTCTGTTATGGATGTTTCCTTCCATCCATCAAAATCTCTGCTTTTCACTGGgtatat attaattagtcgtctctctcacttgtgagaaattctcgagtcatttattgtttttatttatgatgatttggtgcaaaattgaagctttgtttctccagTT CAGCTGATGGAGAGTTGAGGATTTGGGATACTATTCAGCACCGTGCAGTTTCTTCTGCTTGgtttgtgatttttgatttttttaattctttgtttttgtg atcattataaagtagctagcactcattgtatctattgggatttgtagGGCTCATAGTAGAGCAAATGGGGTTTTAGCTGTAGCAGCTAGTCCCTGGTTAG GAGAGGACAAGATTATCAGgtaaaaacgtaagcaatcatgctttcataatcaatctatatacggaaaatctgagctagttactctgatggttatagCCAG GGAAGAGATGGAACTGTTAAGTGTTGGGATATTGAAGATGGTGGTCTATCAAGgtgaatatgatctcccccttattcgactttttatgcgtttgtttcta tcgaactataagtctataaccaatgattcttgtgacatacttggcagAGACCCATTACTAATACTTGAGACATGCGCCTATCATTTTTGCAAGTTCTCTC TTGTTAAGAAGCCTAAGAATTCTCTGCAAGAAGCTGAAAGTCACTCACGGGGTTGTGATGAGCAGGATGGTGGAGACACATGTAATGTTCAAATTGCTGA TGATAGTGAACGATCTGAGGAGGATTCTGGTTTGCTTCAGGgtatgttttacttgcgttgtctaaagattttgttagcaaaataactgtttttcttctta ttgctcatattacaaaaaaatttagcagATAAAGATCATGCTGAAGGTACCACTTTTGTAGCAGTAGTAGGGGAGCAACCTACTGAGgtgactagaaatt catatatgttttgttttggaaaagtcataaaattgtttcttctctcctcttttattggttttcatttcctgtgtttcattcttgtgatttggtctatcca taaagGTAGAGATATGGGATCTCAATACCGGAGACAAGATAATACAGCTTCCTCAAAGTAGCCCTGACGAATCCCCCAATGCTTCTACCAAAGGAAGAGg tgagctcatatttgtctttcagtgagatccttcatatgtacattttcttgttaaaattgatgttttttagcatcagtaaaaaatt►tcaaattagttcac ctttgaacttgcttaaaatactttcatcaaggtcgta◄tata◄tggtcatctgcagGAATGTGTATGGC►TGTTCAATTGTTTTGCCCTCCTGAATCACA GGGTTTCTTACATGTCTTAGCTGGgtatgctctctttcctaagctcttttccattaatcaagaaagacaaatctcaagattacatactttgtttttataa tgggtggttcattccaaacttgcgcagTTATGAGGATGGTTCAATACTTCTTTGGGATATACGCAATGCTAAGATTCCTCTAACAAGTGTGAAGTTTCAT TCAGAGCCAGgtcttgtttccatcctctgtatttagatttttcttatattttgttcctgctctctgaattttccaaattacttaattcgtattctttatg cagTTTTAAGTCTTAGTGTTGCATCATCATGTGATGGAGGAATCTCAGGAGGGGCAGATGACAAAATTGTGATGTATAATCTCAACCATTCAACTgtaag tttgacatctgctagagaggatgcacttgtgtgattgccgtaaagctatagtttaatactgattccatgacattttttcatatgattgtagGGTTCTTGT ACAATAAGGAAAGAGATTACTTTGGAAAGGCCCGGTGTATCGGGCACCTCAATTCGAGTCGATGGGAAAATTGCAGCCACGGCTGGTTGGGACCACAGgt tagcatcctcatgctatgcactgattttcacaatatgaaacaaaacatatgaataaatcaattagacttcgtccagtgtgaaaaaaagttgatgcatatg actaaaaactattctcctgtttgttacatatttggaaacagAATACGAGTCTATAATTACCGCAAAGGAAATGCTCTAGCAATACTAAAGTACCACCGAG CAACGgtatgtgaaaatttcttagactggttcaacagttgagagacaaccattttctaaatctttgtattttgatgccttcatgtgttttgtttgcagTG CAACGCTGTGTCCTACTCTCCAGACTGTGAGCTAATGGCGTCTGCGTCTGAAGATGCAACTGTTGCTCTCTGGAAACTATATCCTCCCCATAAATCTCTC TGAtctttatggttcggttttggtttgatttcttgacctgaatctcttgaattggtaaatatacatgatgtcatcatcaaaaaaacaaatggaaaaacag agagtattttctggtttgttatatatagcccactgattagtttgatttgttcaaactcgcacgttctgccgttttcggagaaaagaataatcaaacgacg cgtagtttgaatcatagtacgttgagtagatttcacgaccaaaagaaattgcatttgcaccaaactaatccgtcaccgtcgtaggagactcataacatct gaagacctaaaattcaaacagtacgatttcatctttctcgagctctagatcaatcgtcattctgctttcttctagatcggtcctgattgtttcccattga tctttgatccggaagctgtgtaaaATGGCGTACGTCGACCATGCGTTCTCGATAACGGACGAGGACATTATGATTGAGACTTCATACACCGTCAATAAC
Border_1 (75602_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCMAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACGACCTTGATGAA
AGTATTTTAAGCAAGTTCAAAGSTGAACTAATTTGAAATTTTTTACTGATGCTAAAAAACATCAATTTTAACAAGAAAATGTACATATGAAGGATCTCAC
CTGAAAGACAAATATGAGCTCACCTCTTCCTTTGGTAGAAGCATTGGGGGATTCGTCAGGGCTACTTTGAGGAAGCTGTATTATCTTGTCTCCGGTATTG
AGATCCCATATCTCTACCTTTATGGATAGACCAAATCACAAGAATGAAACACAGGAAATGAAAACCAATAAAAGAGGAGAGAAGAAACAATTTTATGACT
TTTCCAAAACAAAACATATATGAATTTCTAGTCACCTCAGTAGGWTGCTCCCCTACTACWGCTACAAAAGWGRTACCWKCASCAWGAYCYTTAYCTGSTA
WATWTTTTTGTAATATGAGCAATAAGAAGAAAAACAGTTATTTTGCTAACAAAATCTTTAGACAACGCAAGTAAAACATACCCTGAAGCAAACCAGAATC
CTCCTCAGATCGTTCACTATCATCAGCAATTTGAACATTACATGTGTCTCCACCATCCTGCTCATCACAACCCCGTGAGTGACTTTCAGCTTCTTGCAGA
GAATTCTTAGGCTTCTTAACAAGAGAGAACTTGCAAAAATGATAGGCGCATGTCT
| Start of BLAST Alignment: | NT 1351 / Intron 7 of 12 |
| First 15 bp Perfect Match: | NT 1347 / Intron 7 of 12 |
BLAST Details: Query Sequence: 75602_LB2 Length: (855 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g29860 68417.t03945 transducin family protein / WD-40 ... 3277 6.5e-144 1 At5g26910 68418.t02913 expressed protein 184 0.99994 1 >At4g29860 68417.t03945 transducin family protein / WD-40 repeat family protein contains 3 WD-40 repeats (PF00400); WDVCF variant 1 (gi:12006981) [Mus musculus] Length = 4099 Minus Strand HSPs: Score = 3277 (497.7 bits), Expect = 6.5e-144, P = 6.5e-144 Identities = 656/674 (97%), Positives = 671/674 (99%), Strand = Minus / Plus Query: 855 AGACATGCGCCTATCATTTTTGCAAGTTCTCTCTTGTTAAGAAGCCTAAGAATTCTCTGC 796 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 770 AGACATGCGCCTATCATTTTTGCAAGTTCTCTCTTGTTAAGAAGCCTAAGAATTCTCTGC 829 Query: 795 AAGAAGCTGAAAGTCACTCACGGGGTTGTGATGAGCAGGATGGTGGAGACACATGTAATG 736 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 830 AAGAAGCTGAAAGTCACTCACGGGGTTGTGATGAGCAGGATGGTGGAGACACATGTAATG 889 Query: 735 TTCAAATTGCTGATGATAGTGAACGATCTGAGGAGGATTCTGGTTTGCTTCAGGGTATGT 676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 890 TTCAAATTGCTGATGATAGTGAACGATCTGAGGAGGATTCTGGTTTGCTTCAGGGTATGT 949 Query: 675 TTTACTTGCGTTGTCTAAAGATTTTGTTAGCAAAATAACTGTTTTTCTTCTTATTGCTCA 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 950 TTTACTTGCGTTGTCTAAAGATTTTGTTAGCAAAATAACTGTTTTTCTTCTTATTGCTCA 1009 Query: 615 TATTACAAAAAWATWTASCAGRTAARGRTCWTGSTGMWGGTAYCWCTTTTGTAGCWGTAG 556 |||||||||||+||+||+|||+|||+|+||+||+||++||||+|+||||||||||+|||| Sbjct: 1010 TATTACAAAAAAATTTAGCAGATAAAGATCATGCTGAAGGTACCACTTTTGTAGCAGTAG 1069 Query: 555 TAGGGGAGCAWCCTACTGAGGTGACTAGAAATTCATATATGTTTTGTTTTGGAAAAGTCA 496 ||||||||||+||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1070 TAGGGGAGCAACCTACTGAGGTGACTAGAAATTCATATATGTTTTGTTTTGGAAAAGTCA 1129 Query: 495 TAAAATTGTTTCTTCTCTCCTCTTTTATTGGTTTTCATTTCCTGTGTTTCATTCTTGTGA 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1130 TAAAATTGTTTCTTCTCTCCTCTTTTATTGGTTTTCATTTCCTGTGTTTCATTCTTGTGA 1189 Query: 435 TTTGGTCTATCCATAAAGGTAGAGATATGGGATCTCAATACCGGAGACAAGATAATACAG 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1190 TTTGGTCTATCCATAAAGGTAGAGATATGGGATCTCAATACCGGAGACAAGATAATACAG 1249 Query: 375 CTTCCTCAAAGTAGCCCTGACGAATCCCCCAATGCTTCTACCAAAGGAAGAGGTGAGCTC 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1250 CTTCCTCAAAGTAGCCCTGACGAATCCCCCAATGCTTCTACCAAAGGAAGAGGTGAGCTC 1309 Query: 315 ATATTTGTCTTTCAGGTGAGATCCTTCATATGTACATTTTCTTGTTAAAATTGATGTTTT 256 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1310 ATATTTGTCTTTCAG-TGAGATCCTTCATATGTACATTTTCTTGTTAAAATTGATGTTTT 1368 Query: 255 TTAGCATCAGTAAAAAATTTCAAATTAGTTCASCTTTGAACTTGCTTAAAATACTTTCAT 196 ||||||||||||||||||||||||||||||||+||||||||||||||||||||||||||| Sbjct: 1369 TTAGCATCAGTAAAAAATTTCAAATTAGTTCACCTTTGAACTTGCTTAAAATACTTTCAT 1428 Query: 195 CAAGGTCGTAAACA 182 |||||||||| | | Sbjct: 1429 CAAGGTCGTATATA 1442 >At5g26910 68418.t02913 expressed protein Length = 3509 Minus Strand HSPs: Score = 184 (33.7 bits), Expect = 9.8, P = 0.99994 Identities = 235/429 (54%), Positives = 246/429 (57%), Strand = Minus / Plus
Border_2 (75602_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCMAATCGAATTCAATTCGGCGTTAAYTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACAATGTGTTCAAT
TGTTTTGCCCTCCTGAATCACAGGGTTTCTTACATGTCTTAGCTGGGTATGCTCTCTTTCCTAAGCTCTTTTCCATTAATCAAGAAAGACAAATCTCAAG
ATTACATACTTTGTTTTTATAATGGGTGGTTCATTCCAAACTTGCGCAGTTATGAGGATGGTTCAATACTTCTTTGGGATATACGCAATGCTAAGATTCC
TCTAACAAGTGTGAAGTTTCATTCAGAGCCAGGTCTTGTTTYCMYCCTCTGTATTTAGATTTTTCTTATATTTTGTTCCTGCTCTCTGAATTTTCCAAAT
TACTTAATTCGTATTCTTTATGCAGNTTTAAGTCTTAGTGTTGCATCATCATGTGATGGAGGAATCTCAGGAGGGGCAGATGACAAAATTGNGATGTATA
ATCTCAACCATTCAACTGTAAGTTTGACATCTGCTAGAGAGGATGCACTTGNGTGATTGCCGNAAAGCTATAGNTTAATACTGATTCCATGACATTTTTT
CATATGATTG
| Start of BLAST Alignment: | NT 1295 / Intron 7 of 12 |
| First 15 bp Perfect Match: | NT 1377 / Exon 8 of 13 |
BLAST Details: Query Sequence: 75602_LB1 Length: (710 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g29860 68417.t03945 transducin family protein / WD-40 ... 2571 5.0e-112 1 At1g61820 68414.t06389 glycosyl hydrolase family 1 protei... 199 0.75 1 At4g35920 68417.t04695 expressed protein contains Pfam pr... 189 0.98 1 >At4g29860 68417.t03945 transducin family protein / WD-40 repeat family protein contains 3 WD-40 repeats (PF00400); WDVCF variant 1 (gi:12006981) [Mus musculus] Length = 4099 Plus Strand HSPs: Score = 2571 (391.8 bits), Expect = 5.0e-112, P = 5.0e-112 Identities = 560/607 (92%), Positives = 563/607 (92%), Strand = Plus / Plus Query: 107 TCGAATTCAATTCGGCGTTAAYTCAGTACATTAAAA-ACGTCCG-CAATGTGTTATTAAG 164 || |||| | ||| | || | | | | |||||| || | | ||| || ||| | Sbjct: 1388 TCAAATT-AGTTCACCTTTGAA-CT-TGC-TTAAAATACTTTCATCAAGGTCGTATATA- 1442 Query: 165 TTGTC-TAAGCGTCAATTTGTTTACAATGTGTTCAATTGTTTTGCCCTCCTGAATCACAG 223 | ||| | || ||| ||| | ||||||||||||||||||||||||||||||| Sbjct: 1443 TGGTCATCTGCAGGAATGTGTATGGC---TGTTCAATTGTTTTGCCCTCCTGAATCACAG 1499 Query: 224 GGTTTCTTACATGTCTTAGCTGGGTATGCTCTCTTTCCTAAGCTCTTTTCCATTAATCAA 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1500 GGTTTCTTACATGTCTTAGCTGGGTATGCTCTCTTTCCTAAGCTCTTTTCCATTAATCAA 1559 Query: 284 GAAAGACAAATCTCAAGATTACATACTTTGTTTTTATAATGGGTGGTTCATTCCAAACTT 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1560 GAAAGACAAATCTCAAGATTACATACTTTGTTTTTATAATGGGTGGTTCATTCCAAACTT 1619 Query: 344 GCGCAGTTATGAGGATGGTTCAATACTTCTTTGGGATATACGCAATGCTAAGATTCCTCT 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1620 GCGCAGTTATGAGGATGGTTCAATACTTCTTTGGGATATACGCAATGCTAAGATTCCTCT 1679 Query: 404 AACAAGTGTGAAGTTTCATTCAGAGCCAGGTCTTGTTTYCMYCCTCTGTATTTAGATTTT 463 ||||||||||||||||||||||||||||||||||||||+|++|||||||||||||||||| Sbjct: 1680 AACAAGTGTGAAGTTTCATTCAGAGCCAGGTCTTGTTTCCATCCTCTGTATTTAGATTTT 1739 Query: 464 TCTTATATTTTGTTCCTGCTCTCTGAATTTTCCAAATTACTTAATTCGTATTCTTTATGC 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1740 TCTTATATTTTGTTCCTGCTCTCTGAATTTTCCAAATTACTTAATTCGTATTCTTTATGC 1799 Query: 524 AGNTTTAAGTCTTAGTGTTGCATCATCATGTGATGGAGGAATCTCAGGAGGGGCAGATGA 583 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1800 AGTTTTAAGTCTTAGTGTTGCATCATCATGTGATGGAGGAATCTCAGGAGGGGCAGATGA 1859 Query: 584 CAAAATTGNGATGTATAATCTCAACCATTCAACTGTAAGTTTGACATCTGCTAGAGAGGA 643 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1860 CAAAATTGTGATGTATAATCTCAACCATTCAACTGTAAGTTTGACATCTGCTAGAGAGGA 1919 Query: 644 TGCACTTGNGTGATTGCCGNAAAGCTATAGNTTAATACTGATTCCATGACATTTTTTCAT 703 |||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 1920 TGCACTTGTGTGATTGCCGTAAAGCTATAGTTTAATACTGATTCCATGACATTTTTTCAT 1979 Query: 704 ATGATTG 710 ||||||| Sbjct: 1980 ATGATTG 1986 >At1g61820 68414.t06389 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to beta-mannosidase enzyme (GI:17226270) [Lycopersicon esculentum] Length = 3538 Plus Strand HSPs: Score = 199 (35.9 bits), Expect = 1.4, P = 0.75 Identities = 265/483 (54%), Positives = 269/483 (55%), Strand = Plus / Plus