At1g74970 SYNGENTA 75709
Genomic Sequence (from TAIR)
ttctcgtgctacatctgcagattgatcaacatgaatgctgattatagtatatgatccttaatatatgattatcgcacagatgaatttaaagcttcacatt taatcgtgtaatttggagtagatggcaaaagaacatggaaattaactaaatgacaatgatgtgatgtaaatttttgttttgaccattttgtttttgttaa catatgtaacgaatctacacagagtatttgtgttttcaagctccttgttaagcccaatgaaggtttttaatgggctctaatgggccgattcaataagttg gaaagctcatgaagcgagagggaccgtgcctaatctcatcttcactctgctcgttatcttcttcctttttacctgttcaacgaaactcctgagctcagct tcactttgctcgacgttatcttcttcgttcagcgacaATGGCGTCGATTACGAACCTCGCCTCTTCTCTCTCTTCACTCTCGTTCTCCTCCCAAGTTTCT CAAAGACCTAACACCATTTCCTTCCCCCGCGCGAATTCAGTATTCGCATTACCGGCGAAATCCGCACGCCGCGCTTCTCTATCTATCACCGCCACGGTAT CTGCTCCACCGGAGGAGGAGGAGATAGTTGAACTGAAGAAATACGTCAAATCGAGGCTTCCCGGAGGATTTGCTGCTCAGAAGATTATTGGCACTGGACG ACGTAAGTGCGCAATCGCTAGAGTTGTTCTTCAGGAAGGTACTGGGAAGGTTATCATCAACTATCGTGATGCCAAGgtaaatttatttctaatttcatta tcttattggcttttacactgttgcttagtcgcttgatgtgtttgcttaggccttgaatttggagtttatacagctgagaattgactactcatatgagatt aagatttgaacttgaaattggtattttaacagctaaagcta►tgaaagcagtccacttacccccgtttgaacatattcttg◄gtttatatgaatatctga tacct►gcaag◄agactgacatcatgcatagtgtgtaatcgattgaagcatttagtagtataaattgtagcagtttgtaggagagaaagtcttgaccttt atgaagatattctctgttatgtagggtatactagtcttgtgatcaaactgtatctttatgtacttctttttgatagatgagttatatcagcgcgttacag attaagttgaaactggaagaactctctgaacaaatagtttatatgatgaattctaggctatttagactttagactaggataagtggctgagaaagtgatc aaactgtatcggtattagtcttgtgatcagacgttatctgtatgtagttctttgtgacctgggagctgcatcagcacgttatagattaaggtgaaactgg aagaaatttctgaacaaatagttcatatgataaattctaggctgtttagacttaggataagtggctgagaaagtgttaacaaggagagattatgataaaa gtttggggggttttgacaagctgttttgttgtgaatgggaaagatttgaatccatacgtatattgctgatgatgatcattgtaaacctttttcagGAGTA CCTTCAGGGAAATCCATTGTGGCTTCAGTATGTTAAAGTACCATTGGTGACTTTAGGATATGAGAATAGCTACGACATATTTGTGAAAGCCCATGGAGGC GGTCTCTCAGGTCAAGCTCAAGCAATTACCTTGGGAGTCGCACGTGCACTCCTGAAGGTAAGTGCAGACCACAGATCGCCTTTGAAGAAGGAAGGTTTGC TCACTAGAGATGCGAGAGTGGTTGAAAGAAAGAAGGCCGGGCTCAAGAAGGCGCGTAAAGCCCCACAATTCTCCAAGCGTTAAgagttttacatatcatt ggatcaactcttcaagtagactcctctgcctccattttttttaaaaacttttcttgtctattatcggtcttttgtttcatgttaatgtttatgtgtagac gaactaatacaatctctgttttgtttgaatggaacgcaaagttgatatgcttttgtaacaaatgcacttatgaattgtgatcagacaaatgcacttctga atcgtttatcagttagatttcaggtgaaagtgaaaactttgcttctttcaaaaggtgttcatggatagtggataagcagcaatacctgaacacacttgta tcactttgtgtatctatctaattcctttgatattgaagtagtaatgttgattttgatgggctcataccgaacgaatcagaaatcgacaagtgtgagatag tatgtatgtgtgcataaaataggctggtttagctgggaatggtgatgcgaaaatggaatgttaggtatgagagagcttacccactttgactctttccatg catattcgcttgctcccctctttcctgcttcctctgttttcttttattccatttccatcacttaaaaacaaaacaaaaaacctgaactcttgggttggat ttcaaaccaacataaaccaattctctaatacaacttggtttgatacaatattagagctacttgatgtgtgtaatgtttcgatcagtaggaaaaacaaatc acgt
Border_1 (75709_RBD)
SAGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATCAGTGTTTAAACAAGAATATGTTCAAACGGGGGTAAGTGGACTG
CTTTCATAGCTTTAGCTGTTAAAATACCAATTTCAAGTTCAAATCTTAATCTCATATGAGTAGTCAATTCTCAGCTGTATAAACTCCAAATTCAAGGCCT
AAGCAAACACATCAAGCGACTAAGCAACAGTGTAAAAGCCAATAAGATAATGAAATTAGAAATAAATTTACCTTGGCATCACGATAGTTGATGATAACCT
TCCCAGTACCTTCCTGAAGAACAACTCTAGCGATTGCGCACTTACGTCGTCCAGTGCCAATAATCTTCTGAGCAGCAAATCCTCCGGGAAGCCTCGATTT
GACGTATTTCTTCAGTTCAACTATCTCCTCCTCCTCCGGTGGAGCAGATACCGTGGCGGTGATAGATAGAGAAGCGCGGCGTGCGGATTTCGCCGGTAAT
GCGAATACTGAATTCGCGCGGGGGAAGGAAATGGTGTTAGGTCTTTGAGAAACTTGGGAGGAGAACGAGAGTGAAGAGAGAGAAGAGGCGAGGTTCGTAA
TCGACGCCATTGTCGCTGAACGAAGAAGATACCGNCGAGCAAAGTGAAGCTGAGCTCANGAGTTTCGTTGAACAGGTAAAAGGGAAGAAGATACCGAGCA
GAGTGAAGATGAGATTAGGCACGGGCCCTCTT
| Start of BLAST Alignment: | NT 571 / Intron 1 of 1 |
| First 15 bp Perfect Match: | NT 543 / Intron 1 of 1 |
BLAST Details: Query Sequence: 75709_RBD Length: (732 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g74970 68414.t07965 ribosomal protein S9 (RPS9) identi... 3039 8.5e-133 1 At5g45830 68418.t05244 expressed protein low similarity t... 188 0.99 1 At2g04690 68415.t00428 cellular repressor of E1A-stimulat... 185 0.998 1 >At1g74970 68414.t07965 ribosomal protein S9 (RPS9) identical to ribosomal protein S9 [Arabidopsis thaliana] GI:5456946 Length = 1740 Minus Strand HSPs: Score = 3039 (462.0 bits), Expect = 8.5e-133, P = 8.5e-133 Identities = 625/640 (97%), Positives = 625/640 (97%), Strand = Minus / Plus Query: 677 ACCTGTTCAACGAAACTCNTGAGCTCAGCTTCACTTTGCTCGNCGGTATCTTCTTCGTTC 618 |||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| Sbjct: 1 ACCTGTTCAACGAAACTCCTGAGCTCAGCTTCACTTTGCTCGACGTTATCTTCTTCGTTC 60 Query: 617 AGCGACAATGGCGTCGATTACGAACCTCGCCTCTTCTCTCTCTTCACTCTCGTTCTCCTC 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 AGCGACAATGGCGTCGATTACGAACCTCGCCTCTTCTCTCTCTTCACTCTCGTTCTCCTC 120 Query: 557 CCAAGTTTCTCAAAGACCTAACACCATTTCCTTCCCCCGCGCGAATTCAGTATTCGCATT 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 CCAAGTTTCTCAAAGACCTAACACCATTTCCTTCCCCCGCGCGAATTCAGTATTCGCATT 180 Query: 497 ACCGGCGAAATCCGCACGCCGCGCTTCTCTATCTATCACCGCCACGGTATCTGCTCCACC 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ACCGGCGAAATCCGCACGCCGCGCTTCTCTATCTATCACCGCCACGGTATCTGCTCCACC 240 Query: 437 GGAGGAGGAGGAGATAGTTGAACTGAAGAAATACGTCAAATCGAGGCTTCCCGGAGGATT 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 GGAGGAGGAGGAGATAGTTGAACTGAAGAAATACGTCAAATCGAGGCTTCCCGGAGGATT 300 Query: 377 TGCTGCTCAGAAGATTATTGGCACTGGACGACGTAAGTGCGCAATCGCTAGAGTTGTTCT 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 TGCTGCTCAGAAGATTATTGGCACTGGACGACGTAAGTGCGCAATCGCTAGAGTTGTTCT 360 Query: 317 TCAGGAAGGTACTGGGAAGGTTATCATCAACTATCGTGATGCCAAGGTAAATTTATTTCT 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 TCAGGAAGGTACTGGGAAGGTTATCATCAACTATCGTGATGCCAAGGTAAATTTATTTCT 420 Query: 257 AATTTCATTATCTTATTGGCTTTTACACTGTTGCTTAGTCGCTTGATGTGTTTGCTTAGG 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 AATTTCATTATCTTATTGGCTTTTACACTGTTGCTTAGTCGCTTGATGTGTTTGCTTAGG 480 Query: 197 CCTTGAATTTGGAGTTTATACAGCTGAGAATTGACTACTCATATGAGATTAAGATTTGAA 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 CCTTGAATTTGGAGTTTATACAGCTGAGAATTGACTACTCATATGAGATTAAGATTTGAA 540 Query: 137 CTTGAAATTGGTATTTTAACAGCTAAAGCTATGAAAGCAGTCCACTTACCCCCGTTTGAA 78 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 CTTGAAATTGGTATTTTAACAGCTAAAGCTATGAAAGCAGTCCACTTACCCCCGTTTGAA 600 Query: 77 CATATTCTTGTTTAAACACTGA-TAGTTTAAAC-TG-AAG 41 |||||||||| || | | ||| || | | || || ||| Sbjct: 601 CATATTCTTGGTTTAT-A-TGAATATCTGATACCTGCAAG 638 >At5g45830 68418.t05244 expressed protein low similarity to tumor-related protein [Nicotiana glauca x Nicotiana langsdorffii] GI:688423 Length = 1919 Minus Strand HSPs: Score = 188 (34.3 bits), Expect = 4.4, P = 0.99 Identities = 118/202 (58%), Positives = 118/202 (58%), Strand = Minus / Plus
Border_2 (75709_LBU)
ATCGA:TTCA:TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTAAGCAAGAGACTGACATCA
TGCATAGTGTGTAATCGATTGAAGCATTTAGTAGTATAAATTGTAGCAGTTTGTAGGAGAGAAAGTCTTGACCTTTATGAAGATATTCTCTGTTATGTAG
GGTATACTAGTCTTGTGATCAAACTGTATCTTTATGTACTTCTTTTTGATAGATGAGTTATATCAGCGCGTTACAGATTAAGTTGAAACTGGAAGAACTC
TCTGAACAAATAGTTTATATGATGAATTCTAGGCTATTTAGACTTTAGACTAGGATAAGTGGCTGAGAAAGTGATCAAACTGTATCGGTATTAGTCTTGT
GATCAGACGTTATCTGTATGTAGTTCTTTGTGACCTGGGAGCTGCATCAGCACGTTATAGATTAAGGTGAAACTGGAAGAAATTTCTGAACAAATAGTTC
ATATGATAAATTCTAGGCTGTTTAGACTTAGGATAAGTGGCTGAGAAAGTGTTAACAAGGAGAGATTATGATAAAAGTTTGGGGGGTTTTGACAAGCTGT
TTTGTTGTGAATGGGAAAGATTTGAATCCATACGTATATTGCTGATGATGATCATTGTAAACCTTTTTCAGGAGTACCTTCAGGGAAATCCATTGTGGCT
TCAGTATG
| Start of BLAST Alignment: | NT 504 / Intron 1 of 1 |
| First 15 bp Perfect Match: | NT 566 / Intron 1 of 1 |
BLAST Details: Query Sequence: 75709_LBU Length: (706 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At1g74970 68414.t07965 ribosomal protein S9 (RPS9) identi... 3139 2.6e-137 1 At3g30746 68416.t03586 CACTA-like transposase family (Ptt... 217 0.16 1 At2g26430 68415.t02965 ania-6a type cyclin (RCY1) nearly ... 204 0.54 1 At1g45616 68414.t04756 leucine-rich repeat family protein... 188 0.99 1 >At1g74970 68414.t07965 ribosomal protein S9 (RPS9) identical to ribosomal protein S9 [Arabidopsis thaliana] GI:5456946 Length = 1740 Plus Strand HSPs: Score = 3139 (477.0 bits), Expect = 2.6e-137, P = 2.6e-137 Identities = 661/692 (95%), Positives = 661/692 (95%), Strand = Plus / Plus Query: 17 TTAATTCAGTACA-TTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTT 75 | || |||| || ||| ||| | || | || || ||| | || | | || | Sbjct: 572 TGAAAGCAGTCCACTTACCCCCGTTTG-AACATATTCTTG-GTT-TATATGAAT--ATCT 626 Query: 76 GTTTAA-GCAAGAGACTGACATCATGCATAGTGTGTAATCGATTGAAGCATTTAGTAGTA 134 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 627 GATACCTGCAAGAGACTGACATCATGCATAGTGTGTAATCGATTGAAGCATTTAGTAGTA 686 Query: 135 TAAATTGTAGCAGTTTGTAGGAGAGAAAGTCTTGACCTTTATGAAGATATTCTCTGTTAT 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 687 TAAATTGTAGCAGTTTGTAGGAGAGAAAGTCTTGACCTTTATGAAGATATTCTCTGTTAT 746 Query: 195 GTAGGGTATACTAGTCTTGTGATCAAACTGTATCTTTATGTACTTCTTTTTGATAGATGA 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 747 GTAGGGTATACTAGTCTTGTGATCAAACTGTATCTTTATGTACTTCTTTTTGATAGATGA 806 Query: 255 GTTATATCAGCGCGTTACAGATTAAGTTGAAACTGGAAGAACTCTCTGAACAAATAGTTT 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 GTTATATCAGCGCGTTACAGATTAAGTTGAAACTGGAAGAACTCTCTGAACAAATAGTTT 866 Query: 315 ATATGATGAATTCTAGGCTATTTAGACTTTAGACTAGGATAAGTGGCTGAGAAAGTGATC 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 867 ATATGATGAATTCTAGGCTATTTAGACTTTAGACTAGGATAAGTGGCTGAGAAAGTGATC 926 Query: 375 AAACTGTATCGGTATTAGTCTTGTGATCAGACGTTATCTGTATGTAGTTCTTTGTGACCT 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 AAACTGTATCGGTATTAGTCTTGTGATCAGACGTTATCTGTATGTAGTTCTTTGTGACCT 986 Query: 435 GGGAGCTGCATCAGCACGTTATAGATTAAGGTGAAACTGGAAGAAATTTCTGAACAAATA 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 GGGAGCTGCATCAGCACGTTATAGATTAAGGTGAAACTGGAAGAAATTTCTGAACAAATA 1046 Query: 495 GTTCATATGATAAATTCTAGGCTGTTTAGACTTAGGATAAGTGGCTGAGAAAGTGTTAAC 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 GTTCATATGATAAATTCTAGGCTGTTTAGACTTAGGATAAGTGGCTGAGAAAGTGTTAAC 1106 Query: 555 AAGGAGAGATTATGATAAAAGTTTGGGGGGTTTTGACAAGCTGTTTTGTTGTGAATGGGA 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 AAGGAGAGATTATGATAAAAGTTTGGGGGGTTTTGACAAGCTGTTTTGTTGTGAATGGGA 1166 Query: 615 AAGATTTGAATCCATACGTATATTGCTGATGATGATCATTGTAAACCTTTTTCAGGAGTA 674 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 AAGATTTGAATCCATACGTATATTGCTGATGATGATCATTGTAAACCTTTTTCAGGAGTA 1226 Query: 675 CCTTCAGGGAAATCCATTGTGGCTTCAGTATG 706 |||||||||||||||||||||||||||||||| Sbjct: 1227 CCTTCAGGGAAATCCATTGTGGCTTCAGTATG 1258 >At3g30746 68416.t03586 CACTA-like transposase family (Ptta/En/Spm) has a 2.6e-53 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) [Arabidopsis thaliana] Length = 2289 Plus Strand HSPs: Score = 217 (38.6 bits), Expect = 0.18, P = 0.16 Identities = 245/425 (57%), Positives = 245/425 (57%), Strand = Plus / Plus