At2g31530 SYNGENTA 76722
Genomic Sequence (from TAIR)
TCTCAGCGCCGCGTTTTTTCTCTCCTCATCCTCTCGATGAATTCCTCTCAAGCTTGCTTCTTCCATttttctcttagaccaatctcgctttcgcatccct cctatgccttcctctcgaaacgtaagttttccttccccaaattaagtgcttgggaatcgaaattttaagagattgttgttacctagactagttcaggata caatcgttagagtttcgttgcttcgaattgattaaaccctaatttcaaaagcacagacctgggtttttcactgttcctgcaaagttgataactttttcac tgatactatctcttagactagttctcttaacccggaaattctctcaaagtatccaactttatgaacagaaacaattgttgaggcATGTGTTTTGACCTTG ATAATGTTTTTGCAGGAGACCCATTTCTGTGTTCTCAACCCAGAAAATGCCTTACTACGAATTTGAATATGTCAAGAACGAGACAAGGGCATTCTATACA AATGAACAGAAGACATCTTCTTATGAAAGAAAGGAAGAGTTTTTCGATAAATTATTCCGATAAGTTCAGAGATGATTCTATGAGTAGCGAGGAGATGCAT ACAGATGCTTTGGATGTGGAGATTATTCCGCCAGATTCACAGGACATTCGTAATTCACAGAACTCTGCTGTCTCCAACACACTACAGGATGATAGGCCAA AGTCTTTTAGAAATAGGTTTCTTGATTTTGTTCGGATAAGTTCAGTACTCAATACTGCAGCAGAAAGATTCTTTAAGAGCGAGATAAGGAGGAGGTTGTT TGTAACGGCTGTTTTGCTTGTACTTAGCCGTGTTGGATATTTTATACCTTTACCTGGATTCGACAGAAGATTAATACCTCAAGATTACCTTAGCTTTGTC TCGGGTTCTGTTGGTGAGTGTTCTCATgtcatttgagtcttatagtcccttgtttggttgacatttctatgtatttgtagttaacattttatgtttttga tagaggaactgggtgagTTTGGAGCAGAGATCAAGCTTTCGCTCTTCCAGCTTGGGCTCAGTCCACAAATAATAGCATCCATAATTATGCAGgttaagat ctctcctcgatttgatgtgtttg►cctgagtctgtgcgttctttatatattaagattatgattgatgataaagtgctcatgaaacaccagGTGCTTTGTC ACGTTCTTCCATCCTTGGTGAAACTGCGAAAGGAAGGCTTAGATGGTCACGAGAAGATCAAGAGTTATATGTGTgtttagtttcttacctctcaagccgt gagatgaattcttaacatacaattactttgtttgtcttgtgacttttttgcttcattaaacaaagttactaaatcgcctttttggtcttattttattagA TGGTGGCTATCGTTTTTCTTCGCTATAGTGGAAGCATTAGTGGTGGCTTACACTTCTCTTCAATATTCAGTTTTTGCAGCCACTGCCCAgtaagttaatt aggattcttcacgttcggggtatcaaaatggtgcttttaaattctatcatccattttgccacaactgatgctaaagtaataatgcatgcttattcagggt caagCATGTGATGATGACATCATCTCTGCTAGTCTGTGGTGCAATGACAATGACGTGGCTCTGTGATACAATATCAGAATCTGGATTTGgtatttgattc tctatatctctatctctataaccattggtagcttaaagtgatgctgatatggagtaattggtggagcttgctcataacctgtttctaagccttttacagG TCATGGCTCATCTCTGATTATTTGTGTGGGAATATTGACGGGCTACACAGAGACTTTACACAAGATGCTCAATCAAATCTCAGgtacctttggtttttct tactccacatttctcaaacttatggttagtctttacattagacctgcatgtcttccacatttcctggaggcaactatcattcgcctatcttctcaattga tttataaaaaaaggaagcgttcttctcttttgcagGAAGTTTCTCGAACTGGTTGCCTTACTTGTTAGGCTTGCTGGGCATTTTTACCGTAGTAACTATG TTCGCTGTTGTTGTTACTGAGGGCTGCAGGAAGATTAAACTACAATATTATGGTTTTAAACTTGCTTCTGCTTCGAGgtgatatatgtagctcagcatca ttattttatcgaaaagattgttgtataattgccacttttaccaatatagctaggagtagattacggttaaagtacatttggatgcaacgtgtggtttact catatttgtgtttatgctatgttttgccatttgggcagAGAAGGTTCTCCAATAACAGAGGTGGAGCCGTACATACCTTTTAACATCAACCCGGCTGGAA TGCAACCTGTTCTCACAACCACATATCTTTTGGCATTCCCCAGCATTCTTGCAAGgtaaattgcttgaagaacctcttactattagggtttaaatcattc ctgtttcttacttctttgtgttattgttaccatctaaggctgtctaataaggtaatttattgtttttagTATTCTGGGTTCACCTTTCTTGCTAAACATG AAGGAGATATTAAACCCTGAAAGCACAGTTGGAGCACCACCTTGGGTCTATTACTCAATATATGCGTTTTTCGTCTTTCTCTTCAACATATTTGACATTg tgagtaaatccattacactttttctcagtctgaatttcagtcttccaatgaacattaaacattacatttaccgggtttcttgttttgttatgtagGCCAA CTTGCCAAAGGAAATAGCGGATTATTTAAACAAAATGGGGGCGAGAATACCGAACATAAAGCCTGGGAAAGCCACAATCGAGTACTTAACGAAGATACAA GCATCAACTAGGTTTTGGGgtaagttaagctgtttcattttagatatattgcgtatatggtacaagtataatctctaaaaaccatttcatttggtttgat gcagGTGGCCTTCTGTTGAGCTTTTTGGCAACAGCTTCTACTGTACTTGACCACTATCTACGCAGCATCAATCAAGGCTTTTCTATCGGATTTACATCTG TTTTGATCATTgtaagtgttctttccacgtatcaatatcattcagtttagcagtattgatgtcgttgtgttaataatctctattgtttgtgtacagGTTG GTTCCATTATTGAACTCAGAAGATCTTACCATGCCTACAATGTAATGCCGAGTTTAAGCAAAGCGTTAAAGAGATATGGCGTATAAagggagattggaga aacagaagaacttatagatatattattgtcgtttaaactttagaagtttctgtagctcttttgattagtagattaggcattagataatttgtattaagaa ccaaaacacatttccatcataatattagaagacttaaaacccaagggccaagtatcacaagcatttgcggaaagattatgcaggaatagtcgaacttcat aaatgtctgcaaatactccgagaattattgaacttgaaactgatttcttttcttcgtttgtccagaaaatgagagtcaattgatttagttgtggcatatt tggcactaataggagccaaagttacatttgattcataaacgaaagtccacaactagtcgcattaaagaaacaagaaaattaattgtgtcagttttgcaac t
Border_1 (76722_LB1U)
AATCGAATTC:ATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTG
AGTCTGTGCGTTCTTTATATATTAAGATTATGATTGATGATAAAGTGCTCATGAAACACCAGGTGCTTTGTCACGTTCTTCCATCCTTGGTGAAACCTGC
GAAAGGAAGG:CTTAGATGGTCACGAGAAGATCAAGAGTTATATGTGTGTTTAGTTTCTTACCTCTCAAGCCGTGAGATGAATTCTTAACATACAATTAC
TTTGTTTGTCTTGTGACTTTTTTGCTTCATTAAACAAAGTTACTAAATCGCCTTTTTGGTCTTATTTTATTAGATGGTGGCTATCGTTTTTCTTCGCTAT
AGTGGAAGCATTAGTGGTGGCTTACACTT:CTCTTCAATATTCAGTTTTTGCAGCCACTGCCCAGTAAGTTAATTAGGATTCTTCACGTTCGGGGTATCA
AAATGGTGCTTTTAAATTCTATCATCCATTTTGCCACAACTGATGCTAAAGTAATAATGCATGCTTATTCAGGGTCAAGCATGTGATGATGACATCATCT
CTGCTAGTCTGTGGTGCA
Start of BLAST Alignment: | NT 739 / Intron 2 of 11 |
First 15 bp Perfect Match: | NT 739 / Intron 2 of 11 |
BLAST Details: Query Sequence: 76722_LB1U Length: (615 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g31530 68415.t03575 secY family protein low similarity... 2585 1.6e-112 1 At4g26150 68417.t03501 zinc finger (GATA type) family pro... 199 0.60 1 At5g40260 68418.t04547 nodulin MtN3 family protein simila... 182 0.998 1 >At2g31530 68415.t03575 secY family protein low similarity to SP|P31159 Preprotein translocase secY subunit {Synechococcus sp}; contains Pfam profile PF00344: eubacterial secY protein Length = 3057 Plus Strand HSPs: Score = 2585 (393.9 bits), Expect = 1.6e-112, P = 1.6e-112 Identities = 519/520 (99%), Positives = 519/520 (99%), Strand = Plus / Plus Query: 96 CCTGAGTCTGTGCGTTCTTTATATATTAAGATTATGATTGATGATAAAGTGCTCATGAAA 155 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 740 CCTGAGTCTGTGCGTTCTTTATATATTAAGATTATGATTGATGATAAAGTGCTCATGAAA 799 Query: 156 CACCAGGTGCTTTGTCACGTTCTTCCATCCTTGGTGAAACCTGCGAAAGGAAGGCTTAGA 215 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 800 CACCAGGTGCTTTGTCACGTTCTTCCATCCTTGGTGAAAC-TGCGAAAGGAAGGCTTAGA 858 Query: 216 TGGTCACGAGAAGATCAAGAGTTATATGTGTGTTTAGTTTCTTACCTCTCAAGCCGTGAG 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 859 TGGTCACGAGAAGATCAAGAGTTATATGTGTGTTTAGTTTCTTACCTCTCAAGCCGTGAG 918 Query: 276 ATGAATTCTTAACATACAATTACTTTGTTTGTCTTGTGACTTTTTTGCTTCATTAAACAA 335 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 919 ATGAATTCTTAACATACAATTACTTTGTTTGTCTTGTGACTTTTTTGCTTCATTAAACAA 978 Query: 336 AGTTACTAAATCGCCTTTTTGGTCTTATTTTATTAGATGGTGGCTATCGTTTTTCTTCGC 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 979 AGTTACTAAATCGCCTTTTTGGTCTTATTTTATTAGATGGTGGCTATCGTTTTTCTTCGC 1038 Query: 396 TATAGTGGAAGCATTAGTGGTGGCTTACACTTCTCTTCAATATTCAGTTTTTGCAGCCAC 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1039 TATAGTGGAAGCATTAGTGGTGGCTTACACTTCTCTTCAATATTCAGTTTTTGCAGCCAC 1098 Query: 456 TGCCCAGTAAGTTAATTAGGATTCTTCACGTTCGGGGTATCAAAATGGTGCTTTTAAATT 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1099 TGCCCAGTAAGTTAATTAGGATTCTTCACGTTCGGGGTATCAAAATGGTGCTTTTAAATT 1158 Query: 516 CTATCATCCATTTTGCCACAACTGATGCTAAAGTAATAATGCATGCTTATTCAGGGTCAA 575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1159 CTATCATCCATTTTGCCACAACTGATGCTAAAGTAATAATGCATGCTTATTCAGGGTCAA 1218 Query: 576 GCATGTGATGATGACATCATCTCTGCTAGTCTGTGGTGCA 615 |||||||||||||||||||||||||||||||||||||||| Sbjct: 1219 GCATGTGATGATGACATCATCTCTGCTAGTCTGTGGTGCA 1258 >At4g26150 68417.t03501 zinc finger (GATA type) family protein Arabidopsis thaliana mRNA for GATA transcription factor 3, PID:e1254739 Length = 1695 Minus Strand HSPs: Score = 199 (35.9 bits), Expect = 0.91, P = 0.60 Identities = 211/374 (56%), Positives = 211/374 (56%), Strand = Minus / Plus