At4g39620 SYNGENTA 77105
Genomic Sequence (from TAIR)
GGTTGTGGACGTCGGAGAGGGTGTTGGAGACGAAGGAGGAATTGAGGAGGAGGAGGAAGAAGAACTTGTAGCCATTGGATTTGATGATTCTCCCATtaga cgacgatcgtacggcgaagaaagaaggagaagatctttcttcgacgaccgacgacgactaaaagaaccaacgtccttgtagaaatgtagtcttttttctt tttctttagctctctattcctcctccttattgaattgataattttctcctagtaccaatccttatccttgaatttgatttttttgtttttcttttctaaa tttcgtttttgttaatttcttttttaagagaagttaattagggatttcaatggtggttaaaaccgaagctatatttgcaagcaacaaatcgcatttttat gttagtttttctaagcttggtcatattttataaatgtgtagtggttgctattgtttgcataatcacttgttatgaaacttttatccggttaagtatatat aatgaagccaacagtacaacaGGATCCGTGGCGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTCGGGTTCAaataccc cgaaaattagatccttaacttttttattcctgtatttatagaaacggcccaattgttttgctgtatttacaaaacggcccaacttgtttgctgcttcact gaatgtaccctcaaaacttttttggttgcaactgtaaaaaccttatccgccattaaaggattaggaaaagaaaaaaacttttcgtcaATGGACT►ACTTG T◄TGACA◄TC►ACCTTCGTCACTGAGATTCTCCGATTTCATCTCTTCGATTCCCAAAGAAACCGATCACAAATGGCTTCGCTTCTCAGTAAATCTCGGCG ATGCGAGGAGGTCGACGAGGACGAGGATAACTTGCGGTGCGATTTCGTCAAGGAGGAAACTTGCTGAGAGAGAGAGTGCGGAGAGAGAAAATAGAGTGCT GGTTCGGAGTCTTATGTCGAGGATTAGTGACAGAGAGCCATTGGTGAAGACGCTTGATAAGTACGTGAAGGTCGTAAGATGTGACCATTGTTTCTTACTC TTTGAAGAGCTTGGTAAAAGCGATAAATGGCTACAATGTCTCGAGgtagtcctaatttggagtttcagcttctgtgtattgttagaagattttggattgt ttttatgatccttttagctcattgatggattcatagattgtgtttgtggttatttatgttccaatggcaagactgtatcatgaaaccatgctttgaggtt ttacttcttccttgcttgaatttgtgtagttttgaattccagcttctgggtctttgaaagattggatttttatcagtttagctaaatggtagattcataa gctgtgttttgtgttcagaaacaacactttagcatgaaaggttctgtgtggaggtgtgttggtgctttcattcttaacttgctgtgattcttccttctat agGTGTTCAGGTGGATGCAGAAACAGCGGTGGTATATCCCAGATAATGGAGTCTACTCGAAATTGATATCTGTAATGGGGAAAAAGGGTCAGACCCGTAT GGCAATGTGGTTGTTTTCCGAGATGAAAAACAGTGGGTGTCGTCCTGATGCTTCTGTTTACAACGCTCTCATAACGGCTCATCTTCATACACGAGACAAG GCAAAAGCTTTAGAGAAAGTTCGTGGATACTTGGACAAAATGAAAGGGATTGAGCGGTGTCAACCCAATGTTGTGACTTATAATATCCTGTTGAGGGCTT TTGCTCAATCTGGTAAAGTGGACCAAGTCAATGCTTTGTTTAAGGACTTGGATATGAGTCCAGTTTCTCCAGACGTCTACACCTTCAACGGTGTTATGGA TGCGTATGGGAAAAACGGGATGATTAAGGAGATGGAAGCTGTGCTTACTCGTATGAGGAGTAACGAGTGTAAGCCAGACATCATCACCTTTAATGTGCTT ATTGACTCGTATGGTAAGAAGCAAGAGTTTGAGAAGATGGAGCAGACTTTCAAGAGTTTAATGCGGTCCAAGGAGAAGCCAACTCTGCCTACATTCAATT CAATGATTATAAATTACGGGAAAGCTCGTATGATAGATAAGGCGGAATGGGTTTTCAAAAAGATGAATGATATGAACTACATACCAAGTTTTATCACATA TGAGTGCATGATCATGATGTACGGTTACTGTGGCTCTGTTTCCAGAGCTAGGGAAATATTTGAGGAGGTTGGTGAATCTGATAGGGTGTTGAAGGCGTCA ACACTTAATGCCATGCTTGAAGTTTACTGTCGTAATGGTCTATACATTGAAGCAGATAAGCTTTTCCATAACGCAAGTGCTTTTCGGGTTCATCCAGATG CATCGACGTATAAGTTTCTATATAAGGCATATACCAAGGCAGATATGAAGGAGCAGGTCCAGATACTGATGAAGAAAATGGAGAAAGATGGAATTGTACC TAATAAGAGGTTCTTCTTGGAAGCCCTTGAAGTTTTCGGGTCAAGACTACCTGGTTCTGGTTCTGAAAACAGGAAATCAACTCGTTCCAGCAGGTCACGA GACAGCCCTAAAGGACGTGGTGGAAACCAATTGACTGAATTCCAAGATAAAGATgtaacaaactgaacaaactctttgctggatgttaatctgagcgcac tgcactcccaatgagttatccagtcctttccctgagtcatggttagtattcttctttatttgatacccatctcgaactaagattatatgttcttatagag atgatgaatctaccgccatagctagaggttcagtttggttgatttttattatgcttgagactaattgacatttttgtcatacgatttcagAATAAGCATG TTTTCAGAGCTGTTCAAGATTGCAGAAAGAACTATTTGGAGAACTTGAGTGGACATGATAAAGGTTCCAGGGATGAATCAAGAAAGCCTAGTCAAGAAAA GCAGCCACTATTTGCTTCAGATCAAAATAATATGATGATCAAAGAGAAGAAAGAACTATTCACTAGAGTCTTGTAAtcgattggtaaattgtaactgaaa agtatcatatatatataaacaaaacatcattgttgttggaattaccctagcatgctgaagaagaacacacataacaaacatatctggtttttggaacaca aggtttaaccattacaatttgaaagtgtctgaatcgttgaagcttttcaactgttttcctctgcaaaatcaattcattcacataagaacaaatttctgtt tgtatctcataggaggaagcaagaacaaagaaagacagtgatctagaaacataccatttattgctcccatgttgtggtcttctttgtagacccccaaagg agagccatgcacagagagcatcatctctccagcttttggtagcctcagagtctttggagtcattccaaaagaaagtctttgcccattaacctgcaaaata taaa
Border_1 (77105_LB2D)
AATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTCACAAGTAGTCCATTGACGA
AAAGTTTTTTTCTTTTCCTAATCCTTTAATGGCGGATAAGGTTTTTACAGTTGCAACCAAAAAAGTTTTGAGGGTACATTCAGTGAAGCAGCAAACAAGT
TGGGCCGTTTTGTAAATACAGCAAAACAATTGGGCCGTTTCTATAAATACAGGAATAAAAAAGTTAAGGATCTAATTTTCGGGGTATTTGAACCCGACGT
GAATCGAACACGCAACCTTCTGATCTGGAGTCAGACGCGCTACCATTGCGCCACGGATCCTGTTGTACTGTTGGCTTCATTATATATACTTAACCGGATA
AAAGTTTCATAACAAGTGATTATGCAAACAATAGCAACCACTACACATTTATAAAATATGACCAAGCTTAGAAAAACTAACATAAAAATGCGATTTGTTG
CTTGCAAATATAGCTTCGGTTTTAACCACCATTGAAATCCCTAATTAACTTCTCTTAAAAAAGAAACTTANCAAAAACGAAATTTAGAAAAGAAAAACAA
AAAAATCAAATTCAAGGATAAGGATTGGGACTAGGAGAAAATTATCAATTCAATAAGGAGGAGGAATAGAGAGCTAAAGAAAAAGAAAAAAGACTACATT
TCTACAAGGA
| Start of BLAST Alignment: | NT 18 / Exon 1 of 3 |
| First 15 bp Perfect Match: | NT 13 / Exon 1 of 3 |
BLAST Details: Query Sequence: 77105_LB2D Border #1 Length: (710 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N F23K16 67221 2760 1.7e-118 1 T16N11 51691 634 1.9e-22 1 F9L1 51439 634 1.9e-22 1 F8K4 51025 518 3.3e-17 1 F23K16 67221 Length = 129,047 Minus Strand HSPs: Score = 2760 (420.2 bits), Expect = 1.7e-118, P = 1.7e-118 Identities = 578/634 (91%), Positives = 578/634 (91%), Strand = Minus / Plus Query: 710 TCCTTGTAGAAATGTAGTCTTTTTTCTTTTTCTTTAGCTCTCTATTCCTCCTCCTTATTG 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89635 TCCTTGTAGAAATGTAGTCTTTTTTCTTTTTCTTTAGCTCTCTATTCCTCCTCCTTATTG 89694 Query: 650 AATTGATAATTTTCTCCTAGTCCCAATCCTTATCCTTGAANNNNNNNNNNNNNNNNNNNN 591 ||||||||||||||||||||| |||||||||||||||||| Sbjct: 89695 AATTGATAATTTTCTCCTAGTACCAATCCTTATCCTTGAATTTGATTTTTTTGTTTTTCT 89754 Query: 590 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGAAGTTAATTAGGGATTTCAAT 531 |||||||||||||||||||||||||| Sbjct: 89755 TTTCTAAATTTCGTTTTTGTTAATTTCTTTTTT-AAGAGAAGTTAATTAGGGATTTCAAT 89813 Query: 530 GGTGGTTAAAACCGAAGCTATATTTGCAAGCAACAAATCGCATTTTTATGTTAGTTTTTC 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89814 GGTGGTTAAAACCGAAGCTATATTTGCAAGCAACAAATCGCATTTTTATGTTAGTTTTTC 89873 Query: 470 TAAGCTTGGTCATATTTTATAAATGTGTAGTGGTTGCTATTGTTTGCATAATCACTTGTT 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89874 TAAGCTTGGTCATATTTTATAAATGTGTAGTGGTTGCTATTGTTTGCATAATCACTTGTT 89933 Query: 410 ATGAAACTTTTATCCGGTTAAGTATATATAATGAAGCCAACAGTACAACAGGATCCGTGG 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89934 ATGAAACTTTTATCCGGTTAAGTATATATAATGAAGCCAACAGTACAACAGGATCCGTGG 89993 Query: 350 CGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTCGGGTT 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89994 CGCAATGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCGATTCACGTCGGGTT 90053 Query: 290 CAAATACCCCGAAAATTAGATCCTTAACTTTTTTATTCCTGTATTTATAGAAACGGCCCA 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90054 CAAATACCCCGAAAATTAGATCCTTAACTTTTTTATTCCTGTATTTATAGAAACGGCCCA 90113 Query: 230 ATTGTTTTGCTGTATTTACAAAACGGCCCAACTTGTTTGCTGCTTCACTGAATGTACCCT 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90114 ATTGTTTTGCTGTATTTACAAAACGGCCCAACTTGTTTGCTGCTTCACTGAATGTACCCT 90173 Query: 170 CAAAACTTTTTTGGTTGCAACTGTAAAAACCTTATCCGCCATTAAAGGATTAGGAAAAGA 111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90174 CAAAACTTTTTTGGTTGCAACTGTAAAAACCTTATCCGCCATTAAAGGATTAGGAAAAGA 90233 Query: 110 AAAAAACTTTTCGTCAATGGACTACTTGT-GACA 78 ||||||||||||||||||||||||||||| |||| Sbjct: 90234 AAAAAACTTTTCGTCAATGGACTACTTGTTGACA 90267 T16N11 51691 Length = 91,001 Plus Strand HSPs: Score = 634 (101.2 bits), Expect = 1.9e-22, P = 1.9e-22 Identities = 188/242 (77%), Positives = 188/242 (77%), Strand = Plus / Plus
Border_2 (77105_LB1U)
TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTTACCTTCGTCACTGAGATTCTCCGATTTCATCTCTTCGAT
TCCCAAAGAAACCGATCACAAATGGCTTCGCTTCTCAGTAAATCTCGGCGATGCGAGGAGGTCGACGAGGACGAGGATAACTTGCGGTGCGATTTCGTCA
AGGAGGAAACTTTGCTGAGAGAGAGAGTGCGGAGAGAGAAAATAGAGTGCTGGTTCGGAGTCTTATGTCGAGGATTAGTGACAGAGAGCCATTGGTGAAG
ACGCTTGATAAGTACGTGAAGGTCGTAAGATGTGACCATTGTTTCTTACTCTTTGAAGAGCTTGGTAAAAGCGATAAATGGCTACAATGTCTCGAGGTAG
TCCTAATTTGGAGTTTCAGCTTCTGTGTATTGTTAGAAGATTTTGGATTGTTTTTTATGATCCTTTTAGCTCATTGATGGATTCATAGATTGTGTTTGTG
GTTATTTATGTTCCAATGGCAAGACTGTATCATGAAACCATGCTTTGAGGTTTTACTTCTTCCTTGCTTGAATTTGTGTAGTTTTGAATTCCAGCTTCTG
GGTCTTTGAAAGATTGGATTTTTATCAGTTTAGCTAAATGGTAGATTCATAAGCTGTGTTTTGTGTTCAGAAACAACACTTTAGCATGAAAGGTTCTGTG
TGGAGGTGTATTGGTGCTTTCATTCTTAACTTGCTGTGATTCTTCCTTCTATAGGTGTTCAGGTGGATGCAGAAACAGCGGTGGTATATCCCAGATAATG
GAGTCTACTCGAAATTGATATCTGTAATGGGGAAAAAGGGTCAGACCCGTATGGCAATGTGGTTGTTTTACCGAGATGAAAAACAGTGGGTGT
| Start of BLAST Alignment: | NT 7 / Exon 1 of 3 |
| First 15 bp Perfect Match: | NT 20 / Exon 1 of 3 |
BLAST Details: Query Sequence: 77105_LB1U Length: (893 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g39620 68417.t05134 pentatricopeptide (PPR) repeat-con... 3954 3.1e-174 1 At3g48900 68416.t04960 single-strand DNA endonuclease, pu... 243 0.016 1 At3g16950 68416.t01924 dihydrolipoamide dehydrogenase 1, ... 215 0.30 1 At5g52240 68418.t06020 cytochrome b5 domain-containing pr... 199 0.83 1 >At4g39620 68417.t05134 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 2285 Plus Strand HSPs: Score = 3954 (599.3 bits), Expect = 3.1e-174, P = 3.1e-174 Identities = 814/847 (96%), Positives = 814/847 (96%), Strand = Plus / Plus Query: 47 AGTTGTCTAAGCGTTACCTTCGTCACTGAGATTCTCCGATTTCATCTCTTCGATTCCCAA 106 | |||| | | | | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8 ACTTGT-TGA-CATCACCTTCGTCACTGAGATTCTCCGATTTCATCTCTTCGATTCCCAA 65 Query: 107 AGAAACCGATCACAAATGGCTTCGCTTCTCAGTAAATCTCGGCGATGCGAGGAGGTCGAC 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 66 AGAAACCGATCACAAATGGCTTCGCTTCTCAGTAAATCTCGGCGATGCGAGGAGGTCGAC 125 Query: 167 GAGGACGAGGATAACTTGCGGTGCGATTTCGTCAAGGAGGAAACTTTGCTNNNNNNNNNN 226 |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 126 GAGGACGAGGATAACTTGCGGTGCGATTTCGTCAAGGAGGAAACTT-GCTGAGAGAGAGA 184 Query: 227 NNNNNNNNNNNNNAAATAGAGTGCTGGTTCGGAGTCTTATGTCGAGGATTAGTGACAGAG 286 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 GTGCGGAGAGAGAAAATAGAGTGCTGGTTCGGAGTCTTATGTCGAGGATTAGTGACAGAG 244 Query: 287 AGCCATTGGTGAAGACGCTTGATAAGTACGTGAAGGTCGTAAGATGTGACCATTGTTTCT 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 AGCCATTGGTGAAGACGCTTGATAAGTACGTGAAGGTCGTAAGATGTGACCATTGTTTCT 304 Query: 347 TACTCTTTGAAGAGCTTGGTAAAAGCGATAAATGGCTACAATGTCTCGAGGTAGTCCTAA 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 TACTCTTTGAAGAGCTTGGTAAAAGCGATAAATGGCTACAATGTCTCGAGGTAGTCCTAA 364 Query: 407 TTTGGAGTTTCAGCTTCTGTGTATTGTTAGAAGATTTTGGATTGTTTTTTATGATCCTTT 466 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 365 TTTGGAGTTTCAGCTTCTGTGTATTGTTAGAAGATTTTGGATTGTTTTT-ATGATCCTTT 423 Query: 467 TAGCTCATTGATGGATTCATAGATTGTGTTTGTGGTTATTTATGTTCCAATGGCAAGACT 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 424 TAGCTCATTGATGGATTCATAGATTGTGTTTGTGGTTATTTATGTTCCAATGGCAAGACT 483 Query: 527 GTATCATGAAACCATGCTTTGAGGTTTTACTTCTTCCTTGCTTGAATTTGTGTAGTTTTG 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 484 GTATCATGAAACCATGCTTTGAGGTTTTACTTCTTCCTTGCTTGAATTTGTGTAGTTTTG 543 Query: 587 AATTCCAGCTTCTGGGTCTTTGAAAGATTGGATTTTTATCAGTTTAGCTAAATGGTAGAT 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 544 AATTCCAGCTTCTGGGTCTTTGAAAGATTGGATTTTTATCAGTTTAGCTAAATGGTAGAT 603 Query: 647 TCATAAGCTGTGTTTTGTGTTCAGAAACAACACTTTAGCATGAAAGGTTCTGTGTGGAGG 706 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 604 TCATAAGCTGTGTTTTGTGTTCAGAAACAACACTTTAGCATGAAAGGTTCTGTGTGGAGG 663 Query: 707 TGTATTGGTGCTTTCATTCTTAACTTGCTGTGATTCTTCCTTCTATAGGTGTTCAGGTGG 766 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664 TGTGTTGGTGCTTTCATTCTTAACTTGCTGTGATTCTTCCTTCTATAGGTGTTCAGGTGG 723 Query: 767 ATGCAGAAACAGCGGTGGTATATCCCAGATAATGGAGTCTACTCGAAATTGATATCTGTA 826 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 724 ATGCAGAAACAGCGGTGGTATATCCCAGATAATGGAGTCTACTCGAAATTGATATCTGTA 783 Query: 827 ATGGGGAAAAAGGGTCAGACCCGTATGGCAATGTGGTTGTTTTACCGAGATGAAAAACAG 886 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 784 ATGGGGAAAAAGGGTCAGACCCGTATGGCAATGTGGTTGTTTT-CCGAGATGAAAAACAG 842 Query: 887 TGGGTGT 893 ||||||| Sbjct: 843 TGGGTGT 849 >At3g48900 68416.t04960 single-strand DNA endonuclease, putative similar to single-strand DNA endonuclease-1 [Oryza sativa (japonica cultivar-group)] gi|16923283|dbj|BAB72003 Length = 2296 Plus Strand HSPs: Score = 243 (42.5 bits), Expect = 0.016, P = 0.016 Identities = 291/507 (57%), Positives = 291/507 (57%), Strand = Plus / Plus