At2g31530 SYNGENTA 78584
Genomic Sequence (from TAIR)
TCTCAGCGCCGCGTTTTTTCTCTCCTCATCCTCTCGATGAATTCCTCTCAAGCTTGCTTCTTCCATttttctcttagaccaatctcgctttcgcatccct cctatgccttcctctcgaaacgtaagttttccttccccaaattaagtgcttgggaatcgaaattttaagagattgttgttacctagactagttcaggata caatcgttagagtttcgttgcttcgaattgattaaaccctaatttcaaaagcacagacctgggtttttcactgttcctgcaaagttgataactttttcac tgatactatctcttagactagttctcttaacccggaaattctctcaaagtatccaactttatgaacagaaacaattgttgaggcATGTGTTTTGACCTTG ATAATGTTTTTGCAGGAGACCCATTTCTGTGTTCTCAACCCAGAAAATGCCTTACTACGAATTTGAATATGTCAAGAACGAGACAAGGGCATTCTATACA AATGAACAGAAGACATCTTCTTATGAAAGAAAGGAAGAGTTTTTCGATAAATTATTCCGATAAGTTCAGAGATGATTCTATGAGTAGCGAGGAGATGCAT ACAGATGCTTTGGATGTGGAGATTATTCCGCCAGATTCACAGGACATTCGTAATTCACAGAACTCTGCTGTCTCCAACACACTACAGGATGATAGGCCAA AGTCTTTTAGAAATAGGTTTCTTGATTTTGTTCGGATAAGTTCAGTACTCAATACTGCAGCAGAAAGATTCTTTAAGAGCGAGATAAGGAGGAGGTTGTT TGTAACGGCTGTTTTGCTTGTACTTAGCCGTGTTGGATATTTTATACCTTTACCTGGATTCGACAGAAGATTAATACCTCAAGATTACCTTAGCTTTGTC TCGGGTTCTGTTGGTGAGTGTTCTCATgtcatttgagtcttatagtcccttgtttggttgacatttctatgtatttgtagttaacattttatgtttttga tagaggaactgggtgagTTTGGAGCAGAGATCAAGCTTTCGCTCTTCCAGCTTGGGCTCAGTCCACAAATAATAGCATCCATAATTATGCAGgttaagat ctctcctcgatttgatgtgtttgcctgagtctgtgcgttctttatatattaagattatgattgatgataaagtgctcatgaaacaccagGTGCTTTGTCA CGTTCTTCCATCCTTGGTGAAACTGCGAAAGGAAGGCTTAGATGGTCACGAGAAGATCAAGAGTTATATGTGTgtttagtttcttacctctcaagccgtg agatgaattcttaacatacaattactttgtttgtcttgtgacttttttgcttcattaaacaaagttactaaatcgcctttttggtcttattttattagAT GGTGGCTATCGTTTTTCTTCGCTATAGTGGAAGCATTAGTGGTGGCTTACACTTCTCTTCAATATTCAGTTTTTGCAGCCACTGCCCAgtaagttaatta ggattcttcacgttcggggtatcaaaatggtgcttttaaattctatcatccattttgccacaactgatgctaaagtaataatgcatgcttattcagggtc aagCATGTGATGATGACATCATCTCTGCTAGTCTGTGGTGCAATGACAATGACGTGGCTCTGTGATACAATATCAGAATCTGGATTTGgtatttgattct ctatatctctatctctataaccattggtagcttaaagtgatgctgatatggagtaattggtggagcttgctcataacctgtttctaagccttttacagGT CATGGCTCATCTCTGATTATTTGTGTGGGAATATTGACGGGCTACACAGAGACTTTACACAAGATGCTCAATCAAATCTCAGgtacctttggtttttctt actccacatttctcaaacttatggttagtctttacattagacctgcatgtcttccacatttcctggaggcaactatcattcgcctatcttctcaattgat ttataaaaaaaggaagcgttcttctcttttgcagGAAGTTTCTCGAACTGGTTGCCTTACTTGTTAGGCTTGCTGGGCATTTTTACCGTAGTAACTATGT TCGCTGTTGTTGTTACTGAGGGCTGCAGGAAGATTAAACTACAATATTATGGTTTTAAACTTGCTTCTGCTTCGAGgtgatatatgtagctcagcatcat tattttatcgaaaagattgttgtataattgccacttttaccaatatagctaggagtagattacggttaaagtacatttggatgcaacgtgtggtttactc atatttgtgtttatgctatgttttgccatttgggcagAGAAGGTTCTCCAATAACAGAGGTGGAGCCGTACATACCTTTTAACATCAACCCGGCTGGAAT GCAACCTGTTCTCACAACCACATATCTTTTGGCATTCCCCAGCATTCTTGCAAGgtaaattgcttgaagaacctcttactattagggtttaaatcattcc tgtttcttacttctttgtgttattgttaccatctaaggctgtctaataaggtaatttattgtttttagTATTCTGGGTTCACCTTTCTTGCTAAACATGA AGGAGATATTAAACCCTGAAAGCACAGTTGGAGCACCACCTTGGGTCTATTACTCAATATATGCGTTT►TTCGTCTTTCTCTTCAACATATTTGACATTg tgagtaaatccattacactttttctcagtctgaatttcagtcttccaatgaacattaaaca◄ttacatttaccg►ggtttcttgttttgttatgtagGCC AACTTGCCAAAGGAAATAGCGGATTATTTAAACAAAATGGGGGCGAGAATACCGAACATAAAGCCTGGGAAAGCCACAATCGAGTACTTAACGAAGATAC AAGCATCAACTAGGTTTTGGGgtaagttaagctgtttcattttagatatattgcgtatatggtacaagtataatctctaaaaaccatttcatttggtttg atgcagGTGGCCTTCTGTTGAGCTTTTTGGCAACAGCTTCTACTGTACTTGACCACTATCTACGCAGCATCAATCAAGGCTTTTCTATCGGATTTACATC TGTTTTGATCATTgtaagtgttctttccacgtatcaatatcattcagtttagcagtattgatgtcgttgtgttaataatctctattgtttgtgtacagGT TGGTTCCATTATTGAACTCAGAAGATCTTACCATGCCTACAATGTAATGCCGAGTTTAAGCAAAGCGTTAAAGAGATATGGCGTATAAagggagattgga gaaacagaagaacttatagatatattattgtcgtttaaactttagaagtttctgtagctcttttgattagtagattaggcattagataatttgtattaag aaccaaaacacatttccatcataatattagaagacttaaaacccaagggccaagtatcacaagcatttgcggaaagattatgcaggaatagtcgaacttc ataaatgtctgcaaatactccgagaattattgaacttgaaactgatttcttttcttcgtttgtccagaaaatgagagtcaattgatttagttgtggcata tttggcactaataggagccaaagttacatttgattcataaacgaaagtccacaactagtcgcattaaagaaacaagaaaattaattgtgtcagttttgca act
Border_1 (78584_LB1D)
GTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTAATGTTCATTGGAAGACTGAAATTCAGACTGAGAAA
AAGTGTAATGGATTTACTCACAATGTCAAATATGTTGAAGAGAAAGACGAAAAACGGCATATATTGAGTAATAGACCCAAGGTGGTGCTCCAACTGTGCT
TTCAGGGTTTAATATCTCCTTCATGTTTAGCAAGAAAGGTGAACCCAGAATACTAAAAACAATAAATTACCTTATTAGACAGCCTTAGATGGTAACAATA
ACACAAAGAAGTAAGAAACAGGAATGATTTAAACCCTAATAGTAAGAGGTTCTTCAAGCAATTTACCTTGCAAGAATGCTGGGGAATGCCAAAAGATATG
TGGTTGTGAGAACAGGTTGCATTCCAGCCGGGTTGATGTTAAAAGGTATGTACGGCTCCACCTCTGTTATTGGAGAACCTTCTCTGCCCAAATGGCAAAA
CATAGCATAAACACAAATATGAGTAAACCACACGTTGCATCCAAATGTACTTTAACCGTAATCTACTCCTAGCTATATTGGTAAAAGTGGCAATTATACA
ACAATCTTTTCGATAAAATAATGATGCTGAGCTACATATATCACCTCGAAGCAGAAGCAAGTTTAAAACCATAATATTGNAGTTTAATCTTCCTGCAGCC
CTCAATACACAAAG
| Start of BLAST Alignment: | NT 2376 / Intron 9 of 11 |
| First 15 bp Perfect Match: | NT 2376 / Intron 9 of 11 |
BLAST Details: Query Sequence: 78584_LB1D Length: (714 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g31530 68415.t03575 secY family protein low similarity... 3219 3.6e-141 1 At1g11000 68414.t01123 seven transmembrane MLO family pro... 183 0.9997 1 >At2g31530 68415.t03575 secY family protein low similarity to SP|P31159 Preprotein translocase secY subunit {Synechococcus sp}; contains Pfam profile PF00344: eubacterial secY protein Length = 3057 Minus Strand HSPs: Score = 3219 (489.0 bits), Expect = 3.6e-141, P = 3.6e-141 Identities = 649/653 (99%), Positives = 649/653 (99%), Strand = Minus / Plus Query: 712 TTGTGTATTGAGGGCTGCAGGAAGATTAAACTNCAATATTATGGTTTTAAACTTGCTTCT 653 |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1726 TTGT-TACTGAGGGCTGCAGGAAGATTAAACTACAATATTATGGTTTTAAACTTGCTTCT 1784 Query: 652 GCTTCGAGGTGATATATGTAGCTCAGCATCATTATTTTATCGAAAAGATTGTTGTATAAT 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1785 GCTTCGAGGTGATATATGTAGCTCAGCATCATTATTTTATCGAAAAGATTGTTGTATAAT 1844 Query: 592 TGCCACTTTTACCAATATAGCTAGGAGTAGATTACGGTTAAAGTACATTTGGATGCAACG 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1845 TGCCACTTTTACCAATATAGCTAGGAGTAGATTACGGTTAAAGTACATTTGGATGCAACG 1904 Query: 532 TGTGGTTTACTCATATTTGTGTTTATGCTATGTTTTGCCATTTGGGCAGAGAAGGTTCTC 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1905 TGTGGTTTACTCATATTTGTGTTTATGCTATGTTTTGCCATTTGGGCAGAGAAGGTTCTC 1964 Query: 472 CAATAACAGAGGTGGAGCCGTACATACCTTTTAACATCAACCCGGCTGGAATGCAACCTG 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1965 CAATAACAGAGGTGGAGCCGTACATACCTTTTAACATCAACCCGGCTGGAATGCAACCTG 2024 Query: 412 TTCTCACAACCACATATCTTTTGGCATTCCCCAGCATTCTTGCAAGGTAAATTGCTTGAA 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2025 TTCTCACAACCACATATCTTTTGGCATTCCCCAGCATTCTTGCAAGGTAAATTGCTTGAA 2084 Query: 352 GAACCTCTTACTATTAGGGTTTAAATCATTCCTGTTTCTTACTTCTTTGTGTTATTGTTA 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2085 GAACCTCTTACTATTAGGGTTTAAATCATTCCTGTTTCTTACTTCTTTGTGTTATTGTTA 2144 Query: 292 CCATCTAAGGCTGTCTAATAAGGTAATTTATTGTTTTTAGTATTCTGGGTTCACCTTTCT 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2145 CCATCTAAGGCTGTCTAATAAGGTAATTTATTGTTTTTAGTATTCTGGGTTCACCTTTCT 2204 Query: 232 TGCTAAACATGAAGGAGATATTAAACCCTGAAAGCACAGTTGGAGCACCACCTTGGGTCT 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2205 TGCTAAACATGAAGGAGATATTAAACCCTGAAAGCACAGTTGGAGCACCACCTTGGGTCT 2264 Query: 172 ATTACTCAATATATGCCGTTTTTCGTCTTTCTCTTCAACATATTTGACATTGTGAGTAAA 113 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2265 ATTACTCAATATATGC-GTTTTTCGTCTTTCTCTTCAACATATTTGACATTGTGAGTAAA 2323 Query: 112 TCCATTACACTTTTTCTCAGTCTGAATTTCAGTCTTCCAATGAACATTAAACA 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2324 TCCATTACACTTTTTCTCAGTCTGAATTTCAGTCTTCCAATGAACATTAAACA 2376 >At1g11000 68414.t01123 seven transmembrane MLO family protein / MLO-like protein 4 (MLO4) identical to membrane protein Mlo4 [Arabidopsis thaliana] gi|14091578|gb|AAK53797; similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley] Length = 4224 Minus Strand HSPs: Score = 183 (33.5 bits), Expect = 8.1, P = 0.9997 Identities = 207/369 (56%), Positives = 207/369 (56%), Strand = Minus / Plus
Border_2 (78584_LB2U)
ATCGA:TTCA:TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTGA
ATTAACGGTTTCTTGTTTTGTTATGTAGGCCAACTTGCCAAAGGAAATAGCGGATTATTTAAACAAAATGGGGGCTGAGAATACCGAACATAAAGCCTGG
GAAAGCCACAATCGAGTACTTAACGAAGATACAAGCATCAACTAGGTTTTGGGGTAAGTTAAGCTGTTTCATTTTAGATATATTGCGTATATGGTACAAG
TATAATCTCTAAAAACCATTTCATTTGGTTTGATGCAGGTGGCCTTCTGTTGAGCTTTTTGGCAACAGCTTCTACTGTACTTGACCACTATCTACGCAGC
ATCAATCAAGGCTTTTCTATCGGATTTACATCTGTTTTGATCATTGTAAGTGTTCTTTCCACGTATCAATATCATTCAGTTTAGCAGTATTGATGTCGTT
GTGTT
| Start of BLAST Alignment: | NT 2284 / Intron 9 of 11 |
| First 15 bp Perfect Match: | NT 2388 / Intron 9 of 11 |
BLAST Details: Query Sequence: 78584_LB2U Length: (503 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g31530 68415.t03575 secY family protein low similarity... 2018 6.3e-87 1 At3g62290 68416.t06463 ADP-ribosylation factor identical ... 218 0.058 1 At4g21220 68417.t02882 bacterial transferase hexapeptide ... 201 0.36 1 >At2g31530 68415.t03575 secY family protein low similarity to SP|P31159 Preprotein translocase secY subunit {Synechococcus sp}; contains Pfam profile PF00344: eubacterial secY protein Length = 3057 Plus Strand HSPs: Score = 2018 (308.8 bits), Expect = 6.3e-87, P = 6.3e-87 Identities = 458/505 (90%), Positives = 458/505 (90%), Strand = Plus / Plus Query: 10 TTCGGCGTTAA-TTCAGTACATTAAAAAC-GTCCGCAA-TGTGTTATTAAGTTGTCTAAG 66 |||| | || |||| | ||| | | || | || | ||| | || ||| || Sbjct: 2285 TTCGTCTTTCTCTTCAACATATTTGACATTGTGAGTAAATCCATTAC-ACTTTTTCTCAG 2343 Query: 67 CGTCAATTT--GT-TTACACC-A-CAATATATCCTGA-ATTAAC--GGTTTCTTGTTTTG 118 | ||||| || || || | || || | | | | ||| || |||||||||||||| Sbjct: 2344 TCTGAATTTCAGTCTTCCAATGAACATTAAA-CATTACATTTACCGGGTTTCTTGTTTTG 2402 Query: 119 TTATGTAGGCCAACTTGCCAAAGGAAATAGCGGATTATTTAAACAAAATGGGGGCTGAGA 178 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 2403 TTATGTAGGCCAACTTGCCAAAGGAAATAGCGGATTATTTAAACAAAATGGGGGC-GAGA 2461 Query: 179 ATACCGAACATAAAGCCTGGGAAAGCCACAATCGAGTACTTAACGAAGATACAAGCATCA 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2462 ATACCGAACATAAAGCCTGGGAAAGCCACAATCGAGTACTTAACGAAGATACAAGCATCA 2521 Query: 239 ACTAGGTTTTGGGGTAAGTTAAGCTGTTTCATTTTAGATATATTGCGTATATGGTACAAG 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2522 ACTAGGTTTTGGGGTAAGTTAAGCTGTTTCATTTTAGATATATTGCGTATATGGTACAAG 2581 Query: 299 TATAATCTCTAAAAACCATTTCATTTGGTTTGATGCAGGTGGCCTTCTGTTGAGCTTTTT 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2582 TATAATCTCTAAAAACCATTTCATTTGGTTTGATGCAGGTGGCCTTCTGTTGAGCTTTTT 2641 Query: 359 GGCAACAGCTTCTACTGTACTTGACCACTATCTACGCAGCATCAATCAAGGCTTTTCTAT 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2642 GGCAACAGCTTCTACTGTACTTGACCACTATCTACGCAGCATCAATCAAGGCTTTTCTAT 2701 Query: 419 CGGATTTACATCTGTTTTGATCATTGTAAGTGTTCTTTCCACGTATCAATATCATTCAGT 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2702 CGGATTTACATCTGTTTTGATCATTGTAAGTGTTCTTTCCACGTATCAATATCATTCAGT 2761 Query: 479 TTAGCAGTATTGATGTCGTTGTGTT 503 ||||||||||||||||||||||||| Sbjct: 2762 TTAGCAGTATTGATGTCGTTGTGTT 2786 >At3g62290 68416.t06463 ADP-ribosylation factor identical to GP:166586 ADP-ribosylation factor {Arabidopsis thaliana}; ADP-ribosylation factor 1 - Arabidopsis thaliana, PIR:S28875 Length = 2093 Plus Strand HSPs: Score = 218 (38.8 bits), Expect = 0.060, P = 0.058 Identities = 148/250 (59%), Positives = 148/250 (59%), Strand = Plus / Plus