At2g18020 SYNGENTA 78861
Genomic Sequence (from TAIR)
tattctgatattgattcggttagcatccggataaatctgggttgggctttttaacttggtttttctaagaaaaattctaatatgatttggttagcatccg gattagtctagtttggtaggcctgcctttgtgattcttaactcggtcttttgtatgggtttgaacaattactacaccatttagattcttctgacccatat caaataaagatccacttaggcccattagggttagaacaaacatgaggttgcagaataaaaagggttcattttcctcactctcaagttggatctcaaaacc ctaatatctgaacttcgccgtcgagagcatccATGGGTCGTGTCATCAGAGCTCAACGTAAGGGTGCGGGTTCCGTCTTCAAATCCCACACTCACCACCG CAAAGGTCCGGCTAAGTTCCGTAGCCTCGATTTCGGCGAGAGAAATGGTTACCTCAAGGGCGTCGTGACGGAGATCATCCACGATCCTGGTCGTGGTGCT CCTCTTGCTCGTGTCACTTTCCGTCATCCTTTCCGTTTCAAGAAACAAAAGGAGCTCTTCGTCGCCGCCGAAGGTATGTACACCGGTCAGTTCTTGTACT GCGGTAAGAAAGCTACTCTCGTCGTTGGAAATGTTCTCCCTCTTAGATCTATTCCTGAAGGAGCTGTTGTCTGCAACGTCGAGCATCACGTCGGTGATCG TGGTGTCCTCGCTAGAGCTTCTGGTGATTACGCCATTGTTATCGCTCACAACCCTGACAGCGACACTACTAGgtttgtttctcttatccaaaaatcttct gaggcttataaacattttcagatctgttgattgtttgttgtagattatgatgatcttaatcagattaattagaaaatgcttatgtatcattggttattta gtgtagtttatgatgatgttaatggaatcatttcgttaattagaaatgcttgtggtatagttgttgtagtcttgtgaatgatgatttgagtatatgtttg cgcagGATTAAGTTGCCATCGGGTTCGAAGAAGATTGTCCCAAGTGGATGCAGGGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTGAGAAGCCGA TGCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACTCATGGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTGGAGCATCCTCATGG AGGAGGTAACCA◄TCAGCACATTGGTCACGCCAGTACTGTTAGGCGTGATGCACCTCCTGGACAGAAG►GTTGGTCTTATTGCTGCAAGGAGGACTGGTC GTCTCAGAGGTCAAGCTGCTGCTTCAGCTGCCAAGGCAGACTAGagttaaaagagataaactttgtttctcttgttttctatgtttcaagttttgttgtc tgtgtttccttttgaacctcattctgaaatcctaaaagatttttatgataaacctttctctcttctcgaaaagcttatgttattcacattgcatactctc aatacgcaaagttttcattttgtacatatgaaaattatgtaagaacaacgtaaccaattctcgtgatcgttaaagtggtagttgaattgcagattttcat cgaaacagcagcccgccgcattgctatcacaaagaatcaagtctttggtgttagtcgaattgaagcaatctgaagtacctaaaaaaaaattacaaggaat ct
Border_1 (78861_LB2D)
ATC:AATT:AATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGGTTACCTCCTCCATGAGGATGC
TCCACTGGATTCATAGCCACACCACGAACCTTAGGCCATGAGTTCCTCTTCACACGGTACTTGTGGTACGCGTTTCCTGCCTTGAGCATCGGCTTCTCAG
TTCTTCCACCTCCAGCAACTTGTCCAATCATAGCCCTGCATCCACTTGGGACAATCTTCTTCGAACCCGATGGCAACTTAATCCTGCGCAAACATATACT
CAAATCATCATTCACAAGACTACAACAACTATACCACAAGCATTTCTAATTAACGAAATGATTCCATTAACACCATCC
| Start of BLAST Alignment: | NT 880 / Exon 2 of 2 |
| First 15 bp Perfect Match: | NT 879 / Exon 2 of 2 |
BLAST Details: Query Sequence: 78861_LB2D Length: (376 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g18020 68415.t01986 60S ribosomal protein L8 (RPL8A) 1496 6.1e-63 1 At4g36130 68417.t04726 60S ribosomal protein L8 (RPL8C) r... 960 9.0e-39 1 At3g51190 68416.t05213 60S ribosomal protein L8 (RPL8B) r... 685 3.3e-26 1 At4g14250 68417.t02082 UBX domain-containing protein low ... 440 4.5e-14 1 >At2g18020 68415.t01986 60S ribosomal protein L8 (RPL8A) Length = 1201 Minus Strand HSPs: Score = 1496 (230.5 bits), Expect = 6.1e-63, P = 6.1e-63 Identities = 300/301 (99%), Positives = 300/301 (99%), Strand = Minus / Plus Query: 375 GATGGTGTTAATGGAATCATTTCGTTAATTAGAAATGCTTGTGGTATAGTTGTTGTAGTC 316 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 627 GATGATGTTAATGGAATCATTTCGTTAATTAGAAATGCTTGTGGTATAGTTGTTGTAGTC 686 Query: 315 TTGTGAATGATGATTTGAGTATATGTTTGCGCAGGATTAAGTTGCCATCGGGTTCGAAGA 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 687 TTGTGAATGATGATTTGAGTATATGTTTGCGCAGGATTAAGTTGCCATCGGGTTCGAAGA 746 Query: 255 AGATTGTCCCAAGTGGATGCAGGGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTG 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 747 AGATTGTCCCAAGTGGATGCAGGGCTATGATTGGACAAGTTGCTGGAGGTGGAAGAACTG 806 Query: 195 AGAAGCCGATGCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACTCAT 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 AGAAGCCGATGCTCAAGGCAGGAAACGCGTACCACAAGTACCGTGTGAAGAGGAACTCAT 866 Query: 135 GGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTGGAGCATCCTCATGGAGGAGGTAACC 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 867 GGCCTAAGGTTCGTGGTGTGGCTATGAATCCAGTGGAGCATCCTCATGGAGGAGGTAACC 926 Query: 75 A 75 | Sbjct: 927 A 927 >At4g36130 68417.t04726 60S ribosomal protein L8 (RPL8C) ribosomal protein L8, cytosolic, tomato, PIR1:R5TOL8 Length = 1315 Minus Strand HSPs: Score = 960 (150.1 bits), Expect = 9.0e-39, P = 9.0e-39 Identities = 224/255 (87%), Positives = 224/255 (87%), Strand = Minus / Plus
Border_2 (78861_LB1U)
ATC:AATT:AATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTMCACMAYATTCAGT:::T:
CAATTTGTTATTAAACCTTCTGTTGGTCTTATTGCTGCAAGGAGGACTG:::GT::CGTCTCAGAGGTCAAGCTGCTGCTTCAGCCTGCCAAGGCAGACT
AGAGTTAAAAGAGATAAACCTTTGTTTCTCTTGTTTTCTATGTTTC:AGTTTTGWTGTCTGATGWTCCTWYTGAACCTCATTCTGAANTCCTAAAAGATT
TTTATGATAAACCTTTCTCTCTTCTCNAAAAGTATTATGTTATTCACATTGCATACTCTCAATACGCAAAGTTTTCATTTTGTACATATGAAAATTATGT
AAGAACAACGTAACCAATTCTCGTGATCGTTAAAGTGGTAGTTGAATTGCAGATTTTCATCGAAACAGCAGCCCGCCGCATTGCTATCACAAAGAATCAA
GTCTTTGGTGTTAGTCGAATTGAAGCAATCTGAAGTACCTAAAAAAAAATTACAAGGAATNTTAAAAACGAATCTTGCAGCAAACCTTCAAAATGACACA
GAGGACTCAAAGACATTTATGTGCGTAATACAAGTCCTGATTTCTATAGTTGATTAGCCTGAGTTTTGGG
| Start of BLAST Alignment: | NT 935 / Exon 2 of 2 |
| First 15 bp Perfect Match: | NT 935 / Exon 2 of 2 |
BLAST Details: Query Sequence: 78861_LB1U Length: (658 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g18020 68415.t01986 60S ribosomal protein L8 (RPL8A) 986 6.6e-40 1 At4g36130 68417.t04726 60S ribosomal protein L8 (RPL8C) r... 358 3.7e-09 1 At3g51190 68416.t05213 60S ribosomal protein L8 (RPL8B) r... 252 0.0019 1 At4g36380 68417.t04750 cytochrome P450 90C1 (CYP90C1) / r... 203 0.53 1 >At2g18020 68415.t01986 60S ribosomal protein L8 (RPL8A) Length = 1201 Plus Strand HSPs: Score = 986 (154.0 bits), Expect = 6.6e-40, P = 6.6e-40 Identities = 210/223 (94%), Positives = 214/223 (95%), Strand = Plus / Plus Query: 116 GTTGGTCTTATTGCTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCTTCAGCC 175 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 983 GTTGGTCTTATTGCTGCAAGGAGGACTGGTCGTCTCAGAGGTCAAGCTGCTGCTTCAGC- 1041 Query: 176 TGCCAAGGCAGACTAGAGTTAAAAGAGATAAACCTTTGTTTCTCTTGTTTTCTATGTTTC 235 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1042 TGCCAAGGCAGACTAGAGTTAAAAGAGATAAAC-TTTGTTTCTCTTGTTTTCTATGTTTC 1100 Query: 236 A-GTTTTGWTGTCTGATGWT-CCTWYTGAACCTCATTCTGAANTCCTAAAAGATTTTTAT 293 | ||||||+|||||| ||+| |||++|||||||||||||||| ||||||||||||||||| Sbjct: 1101 AAGTTTTGTTGTCTG-TGTTTCCTTTTGAACCTCATTCTGAAATCCTAAAAGATTTTTAT 1159 Query: 294 GATAAACCTTTCTCTCTTCTCNAAAAGTATTATGTTATTCACA 336 ||||||||||||||||||||| ||||| |||||||||||||| Sbjct: 1160 GATAAACCTTTCTCTCTTCTCGAAAAGC-TTATGTTATTCACA 1201 >At4g36130 68417.t04726 60S ribosomal protein L8 (RPL8C) ribosomal protein L8, cytosolic, tomato, PIR1:R5TOL8 Length = 1315 Plus Strand HSPs: Score = 358 (59.8 bits), Expect = 3.7e-09, P = 3.7e-09 Identities = 127/184 (69%), Positives = 130/184 (70%), Strand = Plus / Plus