At4g20060 SYNGENTA 79668
Genomic Sequence (from TAIR)
cattattgtacgattgtagtctaaaaaaaaagaagttgtgttattgtgcaaaccaaaaggacctacgaaagtataaaaacctaaagatacaaggcccaat agtggtgagcccatcacgatcgcgtattctcttaaaccggatcacttacctgaaccgaaccggaatcggcagctaataatttgaagtcgggtttggtcct cgattgaatttttatgttctgtaaattcgtgagaagaggcttcttcatctgcgtatggcgtgaaaattcgtaatctttcgtttgacagaactcttctatt tatcatcaatctccggtttcttcttctttgtaagccctaagaagccaaaaagtgctaaccATGGAGAAGGTTTCAGCAGCTTGCGCCATGGAATGGAGCA TCAAGCTCGAGAAATCTCTTCGTTCTAAAAACTCAGgtcctttcttccgcttttcaacttcatagttcttagaaatttcgaatttcagctcctcttgttg tttcacattaagcaaacctctaaattgctttgctttacttatttggcgaatatatgttcttgttgtcttctctggaactatgaaagtataaagttttgag ttttgggtgatattatttcagTTAAAGCCGTTGAAGCTATCTTAGAGACTGGTGGGAAGCTTGAACAGTGGAGTAAAGAACCAGAATCTGCTATTGCTGT TTACAATTTATTTGGTTTGGTTCCTGAAGAAGATAAGCTCTTTTCAAATACTATCCTGTTGAGGCTTGTTGACGCGTTTTGTGTTGGGGATAAGCTTATT AAGCTTGCTGTTGTTCGGGTTTTTATGTCTATGTTTAAGCTAAGCCGAGGGAAGAACGTAAATGAATCAGCAAGTTGGTTTTTGTCAAAGGGTAGGGTGC ATAACCACTTGGAATTGCTTACACGAGTGAAGAATGTGTATGATAAGGGTGATACTGAGTCTAAAGCTTTGGCTTTGATTCTGTTTGGTTGTTGGAGAGA TTTTGCTAGCGAATTTGCTCCTGTACGGTATTTGGTTTTCAGCAGTATGGTTTCTCCTCATGATCTGGAGgtaagcatagttcattttagttcttttgtt gatgtgtttgcttcggagtttctgttatgaaggctaaaaatttgatacttaatagaagtagtggttgtgatacatcaaactggagttcataatttctcac gcatttggcactgtgttctgtggctagtgtatattaccgtgagggtcattcaatgtgtatgtcagggtttttttaaaagttaatttgaagagtgagtagc tttgtttagtccaagtttaaagaaaaacctcaactgtgaatctgtgatttgaacttggttgttggaatattcttgttgtagaatttgaactgttctaatc cgttttatgcttgcagGGAAGATCAGCTCTGTTTGCTGCAGCTTGCTTTTGTGAAGTAGCAGATGACTTTGCATTGGTTGTTCTGGGGATGTTAAACGAC ATGGTGAAGTTCCCAGACATAACGCCAAAGACCAGGTTAGCTGCTGTGCGAGTTTTTGCAAAAATGGGATGCTCGCATACAATTGCTAATAGAGCATTCA AGgttctttatctaattctttttctatctgcttctaatgctcaaagattctcatgtatagtaagccgtcaagaagtttttggtaaagaaagatttgctga aactggaattgaattttgctgttgttaccatcttgcgatttcaaaatatagtagattactagattaagagttacttgtgtgatgaaactctgtcaatgta cggaatatcatagcaatgcattaaataaagccatctgtattgaacttcagtcaaccattatgttattgtagATTTGTATGAAGCTAATGCTGGACTCCCC AAAAGAGGACAATTTGGTTCCATTCCTGGTTTCCTTGACTAAGCTTGCTTCAAGATCAACTCATCTTGCTTCTGAACTGgtatgttctttttcgccttat acttttttctaattcctggtttacacagattaaatgttttgaagtcaatattggcccttgtgaaaatagaatttctacaatagaaagccactgttttgct gagtttgagtcttcactggttggttgatataaattgcaaataaggcatcacttttcattggttctctgaaaggaaactatccctctattgattacaaaca aactaatagagaaaagtataatagtattcaatgtgggtgcagGCAGAGGTTATCATACCCTTTCTGGGTGAAGATAAAACTTCTCATGCTCGAGCTGCAG TATTGAGATGTCTCCACTTTCTCATAGAAAGAGGGATGTGCTTCTCTCTTGCCCATGAAAGAGATATTGCAAGTGTTTCAAGCTTATTAAAGCAAGAAGA GCTCTCATCAGATATGCAAGTTAAAGCTCTTCAAATTTTTCAGAAGgtacttcatacgccaaatatttttatttcttttgcaaattgacgatgcttactt accgttgatgtgaatgcagATAGTTGTCTACAAACTATGCATGACTGATGCATCTGAATTACTTCAGCTCATAGCTATTACTGAGAATGCATCTCATTCT CAGATCTTTTCAAGCAGTTGTTTAGCCATCAGTGTCTTGGTGAGTATATGGACAGAAATAGTTCGGACAGCGGAAAAAAGATCAATTGAGATATCTTCAA CATCTCTTCCGATGCAGCTCGTTGTATTAATCATGGACAGGGTCGCCTTGCTGGGGCGATTATGTTCTGATCTTTTTCGAGCTGGCTATGCTGTAGTTAG TGAGGTTCAAGACCTCTTGAAGGTTCTCCACCTATTAGTAGGAAAACATTCTGAACTGAGACTGCTAGTTCTTGAAAAAGTCAGATTATTCTTAACGTAT ATTGTGAGCCTAAATGATGGCTTAAGAAAAGCAGATGGAGCTCATGAATTGCTATTTGGTGTTATCAATTATAAAGACAAAAGAGGGGTGGTCATGAGGT CAGAGTTTCTAGCATCAATACACAAGTTCCTGATAGTGTTCTTGGAAAATCTCGAGGGAGATGATAATCTTTTGTCTGAAATTTATGAAAAGGTGAAGCA TATCACTGAGTTTGTAAGTTCATGCAGCTTCATTGATTTCCACACACAAATGATATTCACACTGCTACTACATTCCCCGATTCTTTGGGGATTCTCTGTG AATGATGATACAGGAAATTCAGGCGTATCACTTGTTGCTGATATAGTTAACTATGGAATCGTTTCTCTTGACTGTTCAAATCAGATTTTAATGGAGAGAA ACTACTGGCCTGCTTACAGAGCTGGGGTTTACGCAGCACGTTTGGGTGCTTGGGTCACATCTGCTATGATTTTTGACCAGCTCAAAACCAACGTCCAGTC TGATATTAATTGTTGCTGGTTAAAGTCATTAACCTATTTATCCCATGCCGAGGGAAAATTCCAACTGCTTCTCACTCCAAGTGATAGTGTCAAGTTAGTC AATTGGCTGAAAAATAATGGTTATTTACCAGAACTCTCCAAAGATGCCTCTGGAGAGTTTGCACACTGTCTAGCTCTTCGTGAAGCTTATATGAATTTAC AATCGTCTCTGGGAATGTTGGGAAATATTATAGCGTCAAGTGGAGTATTCTGTTTCCAAACGTGGTTCTTGGTTCTAAAGACTCGGGTATTGGAAACCGT GCTTGAACTCGTCGAATGCCTTGGGCTGCTTAACCAAGATTTACGCAACAAGAATCAGGTGGAAGAAATACTCTTGACTGGTTGCGATTCCCTGCAACAG CTTCCTCGGATTTCTATTCAGCTACAAAAGTTGGCAAAGGAATTTGATATGTTGGCGACGTGTTTCATAGACATAGACGATAGCAGTTCTAGCATTATCA CAACAATTTCACTGAGCTGTTCAGTTCTGGCTTTTGCTGCTGGAATTGTTCTTTTCCTTCCAGGTTTTTCTTTTCAAGAAGCATTGGTTCCTTTCACTTC ACAAAGCGGTCTGTGCTCGAGGCTTGTAGAAGATTTAGTTCGACGGCTGTGGAAAGTAGACCCCAATGTCTGCGAAAAGCTCAACATACTCGTTAACACA AACGAGTCGTTAAACTGTTTCCATTTGCAATCTAGGAATCAGGTTTTGAGAGTCTGTGGCAAAGTAAAGATGCTGCTCTCTATTTGCAGAGATGCTCTTT CATGCACTTATGGATTGCAGAATCAGTCAATGTCAATGCACAAAGAGGAGATTATGTCTGAGATTACGAAAAGTTGCAGGCATCTACTGTCACAAGCAAT TATGAAATGGATGCAGATTCCTTTTGGTATTCCAAAGTATTTCTTCAACATAAGGCCTTGTGTTGGTGCCGAGCTATTTGCTCTTAGTTCAGAGAGTAGC AAACGTATTCCTGACACAGTTTCAGTGGAACAAGGGTTTCAACTGTCACTAGATCTTTGTCTTCAGTTGAAAAACATAAAACAACG◄GCAAGTCCCTGTT CGACTTAACAAACTGTATT◄GCCTTCTCTATACTAAACTAGCTTATCATTCTCCAACTCAACACGGTGAAAACAACAGAAACCAAATGTCTTATTCCCCT TGGAGAGATGAAGATCTGATTGAAATGAGTAACAAGCTGTTTCATCATGCTATAAAGTCTGGTAAGAAGCCGGACGTCTCAGGTCGATTTGATTGGGCCA AGAGTGGTGTTTCTACGGTTGTGCAGTTCGAACCAAACGAGAGAGGACAAGGGTTTTCAAGCTGCTTGTTAGACGTTTCGCGTTTCCCGGTTGGTTCATA TCAAATAAAATGGCTAAGCTGTTGCGTTGATCAACATGGTTCTTACTGGAATCTTCTACCTCTCAATGGCAAACCTGTGTTTACGGTTAAGAAAGCGTCA TGActagaataagtgttggttttgacatggcggaagagtaaaaagatctaaggaggatctagttcgggagcaagcaagaaatgagacagagattggcttt aagactaatctcgaaatatgcagctacacataagagagatgtttgcttcaacactatttaggtgaactaatttttattggtatgttgttatgttatgtta actagattgtagactaaaatccatgaaaattaaagcttgaaaagctaaagtcaattccatctaacactgatatgtgataattagctaataagtaataatt aaagcttttaatgaaagtaaaatttttgttggtgaccaaatattactcaaatatatatttactattgttcagattattatacaaatacaagaacggttca ga
Border_1 (79668_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATAT
CCTGAATAACACATTAAATTGAATTTGTTTAGTCGGTTAATTCGGCGTTGTTTTATGTTTTTCAACTGAAGACAAAGATCTAGTGACAGTTGAAACCCTT
GTTCCACTGAAACTGTGTCAGGAATACGTTTGCTACTCTCTGAACTAAGAGCAAATAGCTCGGCACCAACACAAGGCCTTATGTTGAAGAAATACTTTGG
AATACCAAAAGGAATCTGCATCCATTTCATAATTGCTTGTGACAGTAGATGCCTGCAACTTTTCGTAATCTCAGACATAATCTCCTCTTTGTGCATTGAC
ATTGACTGATTCTGCAATCCATAAGTGCATGAAAGAGCATCTCTGCAAATAGAGAGCAGCATCTTTACTTTGCCACAGACTCTCAAAACCTGATTCCTAG
ATTGCAAATGGAAACAGTTTAACGACTCGTTTGTGTTAACGAGTATGTTGAGCTTTTCGCAGACATTGGGGTCTACTTTCCACAGCCGTCGAACTAAATC
TTCTACAAGCCTCGAGCACAGACCGCTTTGTGAAGTGAAAGGAACCAATGCTTCTTGAAAAGAAAAACCTGGAAGGAAAAGAACAATTCCAGCAGCAAAA
GCCAGAACTGAACAGCTCAGTGAAATTGTTGTGATAATGCTAGAACTGCTATCGTCTATGTCTAT
| Start of BLAST Alignment: | NT 4158 / Exon 6 of 6 |
| First 15 bp Perfect Match: | NT 4126 / Exon 6 of 6 |
BLAST Details: Query Sequence: 79668_LB1 Length: (865 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g20060 68417.t02759 expressed protein ; expression su... 3125 4.3e-137 1 At3g28350 68416.t03215 hypothetical protein 216 0.26 1 >At4g20060 68417.t02759 expressed protein ; expression supported by MPSS Length = 4541 Minus Strand HSPs: Score = 3125 (474.9 bits), Expect = 4.3e-137, P = 4.3e-137 Identities = 639/652 (98%), Positives = 639/652 (98%), Strand = Minus / Plus Query: 865 ATAGACATAGACGATAGCAGTTCTAGCATTATCACAACAATTTCACTGAGCTGTTCAGTT 806 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3507 ATAGACATAGACGATAGCAGTTCTAGCATTATCACAACAATTTCACTGAGCTGTTCAGTT 3566 Query: 805 CTGGCTTTTGCTGCTGGAATTGTTCTTTTCCTTCCAGGTTTTTCTTTTCAAGAAGCATTG 746 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3567 CTGGCTTTTGCTGCTGGAATTGTTCTTTTCCTTCCAGGTTTTTCTTTTCAAGAAGCATTG 3626 Query: 745 GTTCCTTTCACTTCACAAAGCGGTCTGTGCTCGAGGCTTGTAGAAGATTTAGTTCGACGG 686 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3627 GTTCCTTTCACTTCACAAAGCGGTCTGTGCTCGAGGCTTGTAGAAGATTTAGTTCGACGG 3686 Query: 685 CTGTGGAAAGTAGACCCCAATGTCTGCGAAAAGCTCAACATACTCGTTAACACAAACGAG 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3687 CTGTGGAAAGTAGACCCCAATGTCTGCGAAAAGCTCAACATACTCGTTAACACAAACGAG 3746 Query: 625 TCGTTAAACTGTTTCCATTTGCAATCTAGGAATCAGGTTTTGAGAGTCTGTGGCAAAGTA 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3747 TCGTTAAACTGTTTCCATTTGCAATCTAGGAATCAGGTTTTGAGAGTCTGTGGCAAAGTA 3806 Query: 565 AAGATGCTGCTCTCTATTTGCAGAGATGCTCTTTCATGCACTTATGGATTGCAGAATCAG 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3807 AAGATGCTGCTCTCTATTTGCAGAGATGCTCTTTCATGCACTTATGGATTGCAGAATCAG 3866 Query: 505 TCAATGTCAATGCACAAAGAGGAGATTATGTCTGAGATTACGAAAAGTTGCAGGCATCTA 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3867 TCAATGTCAATGCACAAAGAGGAGATTATGTCTGAGATTACGAAAAGTTGCAGGCATCTA 3926 Query: 445 CTGTCACAAGCAATTATGAAATGGATGCAGATTCCTTTTGGTATTCCAAAGTATTTCTTC 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3927 CTGTCACAAGCAATTATGAAATGGATGCAGATTCCTTTTGGTATTCCAAAGTATTTCTTC 3986 Query: 385 AACATAAGGCCTTGTGTTGGTGCCGAGCTATTTGCTCTTAGTTCAGAGAGTAGCAAACGT 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3987 AACATAAGGCCTTGTGTTGGTGCCGAGCTATTTGCTCTTAGTTCAGAGAGTAGCAAACGT 4046 Query: 325 ATTCCTGACACAGTTTCAGTGGAACAAGGGTTTCAACTGTCACTAGATCTTTGTCTTCAG 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4047 ATTCCTGACACAGTTTCAGTGGAACAAGGGTTTCAACTGTCACTAGATCTTTGTCTTCAG 4106 Query: 265 TTGAAAAACATAAAACAACGCCGAAT---TAACCGACTAAACAAATTCAATT 217 |||||||||||||||||||| | | | | ||||| |||||| | ||| Sbjct: 4107 TTGAAAAACATAAAACAACGGCAAGTCCCTGTTCGACTTAACAAACTGTATT 4158 >At3g28350 68416.t03215 hypothetical protein Length = 2306 Minus Strand HSPs: Score = 216 (38.5 bits), Expect = 0.29, P = 0.26 Identities = 328/600 (54%), Positives = 328/600 (54%), Strand = Minus / Plus