At5g27540 SYNGENTA 80307
Genomic Sequence (from TAIR)
tgtgtttacggaaataccactagactaaacacagacaaggtaaaaaaaaaaaacagcttaccaaatttttctcctccttcacggcaaatcgtcaccgcca cattatctcccaaactaagaatctagggttttctaagggtttttaatcttcgtccttctctccttctccagttttaggtttcaggtttatctctcgtttc tttcatcgaatcttttgatctttaggttagttttgcttctcgttgatgttactctttccattgttatctatggttctggattcgtcatatccttcacgat cttcatgtttctgggtttttaaaatcatgctgcgaagtttcagtaatcgtgtctcagactcgtcaatctttgtacttgattctgaattgttgagtgtttg attgtgttgcagtttcagATGGCGAGATACGCTGCTGGTGCGGTTGATTGTCCTGGTTCTCCCAAATCTGTGCGAATCGTTGTGGTTGGTGATAAGGGCA CTGGAAAATCAAGCTTGATTGTTGCTGCAGCCACTGATTCTTTCCCTCCCAATGTCCCTCCTGTTTTGCCTGATTACAAGTTGCCTATTGAATTCTTCCC TGATGGTATACCCGTCACCATTGTCGACACTTCCTCGAGgtatatatccttatataagttcactgtattgctggataattactctcttaaataaagctac tttgaaagaaaataatttctagtttagagaaaagagtgttgcttttatatacaatattgttgttgggattgcactgtgccaactgtttgtgggtttagga tattttaagctttgccagctttgttgaggttcttgaagtatgttttgatgtttttgttcgttggttcagGCCAGAAGATAGGGACATTGTTGCTGAGGAA TTGAAGCGCGCAGATGCAGTAGTTTTGACATATGCCTGTGATCGACCTGAGACTCTCGAACGTTTGAGTGAATACTGGCTTCCAGAGCTTCGGCGATTAG AGgtttgattttcatctctctgttttcagtttggtcatgtcaatcttgttgtgtgtaaaaggtgtacaatatcttatctattgatcatatcattgtcata atgctagaaggtgtgacctaaacctttgctgtttcttattaagattggcttgtgatgtttttgaacagGTAAAAATTCCTATTATCGTAGCAGGATGTAA GCTTGACTTCAGAGACGACAATAACCAGGTCAGCCTCGAACAAGTGATGTCACCTATAATGCAGCAGTTTCGGGAGATAGAGACTTGTATCGAGTGTTCT GCCCTGAAGCAACTCCAGgtttcatgacttctgaattcctcttgatatgtgatatttttctttgttcaaacatggcacaaatattggtccgaggtagctt aggcatgtgcttgtcttactaagaaatttcaaggacttaagatgtgctaaatttttgcctgaaagtagatattgttgttattggtttggacttttatcag tcatgaactggaaatgcctagtcagaaattagcattcggtggtaattacaaattatattccaggtctaaactatcatcctaatgcacaagctttcctgta gGCACAAGAAGTTTTCTATTATGCACAAAAGACTGTCCTTCACCCAACAGGACCTCTGTTTGATCAAGATTCCCAGGCACTGAAACCCCGGTGTGTAAGG GCATTGAAGCGTATCTTTATACTCTGTGATCATGACAGAGATGGTGCTCTTAGCGAGGCTGAGTTAAATGATTTTCAGgttcttatatttcctctttcgt gtttcatgtgcttcgctgttcgtcattgaattggcttagccctatccttcagattttaaaaagaagcttgaagtttaattatgttatccccatgacgcac ctaatagttgttttacaatagGTCAAGTGTTTCCATGCACCATTGCAGCCTTCTGAAATTGAAGGTGTTAAGAGGGTTGTGCAAGAAAAGTTGCCAGAAG GTGTGAATGAAAGAGGACTGACAGTCACTGGCTTCCTATTTTTACATGCACTTTTTATTGAGAAAGGGAGGCTTGAGACTACGTGGACTGTACTCAGGAA GTTTGGGTATAATAATGATATAAGACTTGCTGAAGAATTGCTTCCATCTGCAATATTCAAGCGAGCTCCTGATCAGgtaaatttgcagaaataacatcca ttgttcttcattattgtatttgttggtgtttcaataatctattactggaaagagctgtatatcgagcattaaattttgtaatcttatcagaaataagaat tttggatgcctacattactggaaaacggttatcttacagctcacattaacttgccttccttggtattgtgcagctaatgtttgtgttcattgtttttgta gAGCTTTGAGTTGACAAATGCAGCAATCGATTTCCTGAAAGGAATGTATATGTTGTTTGATGACGACCAGgtatgtttcttttcttataaatggcgtagt gttgagttgacaaataaatttctcagactgaatttgcactttgcagGATAACAATCTGAGACCTCAAGAGATCGAGGATCTTTTTTCAACTGCACCTGAA AGgtaccttttttacacctccagaaggcaaagaacgtgtacttttgattatggtaatctccattatattgccatgccatactaaattgtgaatggcagTC CATGGAAGGAAGCTCCTTATGAAGATGCTGCGGAAAAAACTGCCCTTGGAGGACTATCATTTGACGCTTTCCTGTCAATGgtaatcaatactcttttaca tgcttaacaacataatgaagcattcttgtgcatgcattatacacatactcatccttctttattttatttttctttgattttgttgactgacatacttaaa tttcacacaattctctctttattttcttgtaacacatccaatttatagttggattatatgtcgttttgcgattttgaatggattttactctgggccaaag ttttgttcatgaactaattcaaagtttaattgtgtgctaatctttcaattttatccttgcagTGGTCACTGATGACACTATTAGAACCGGCTCGGAGTGT GGAGAATTTGATTTACATTGGATTCCCGGGTGATCCATCGACTGCCATTCGTGTTACTAGGAGAAGACGTTTAGATCGCAAAAAGCAGCAATGTGAACGA AAAGTTTTCCAGTGCTTTGTTTTTGGACCTAATAATGCTGGAAAATCTGCATTGCTGAATTGCTTTCTTGGAAGgtttgtcatgttaactcgtaccacaa cttgttggattttcaaaatacacagaagagagtataattctatgtttataagcaaggagacgtttaattttcctctttttcagttgatctctccatctgg tttatagttttgtttctccatgatctagGTCATATACTGATAACCAGGAATCAACTACTGATGAGCGTTATGCAGTAAATATGGTCGATGAATCGgtgag tcagtatacttatgaaatttgtatcgttatgtttgtatgcgcgcataaatatatatgtattttagtttggttatattttgtctttgcaaagaaatcttcc acgtgcaaaatactgaacaaaaatgacaaacttcagtgttgttttggggactgagatgggaactagctagatatctttgatgagttttctctatgggtgg atacatgcttttttacttggaaatttcaaacaaaactgttcagagagattgaagatgttatttggatgtacatttttgggcaacatgcttcatggctact ttctctaagtttcggtatgtaattggtcattattctgatagtggcaaatctctaaatgtagGGTGCTAAGAAAACTCTTATCATGAGGGAAATTCCAGAA GATGGAGTTCAAGGGCTATTTTCATCCAAGGAATCCTTAGCTGCATGTGACATAGCTGTCTTCGTGTATGACAGgtatatgtcctgctgtttgattggtt gaa►atatacctctctgtatgtagtttgtacgtaataattgagttca◄ttgttttctccagTTC►TGATGAGTCGTCATGGAAGAGAGCGACCCAGTTGC TTGTAGAAGTTGCAAATTATGGTGAGGCCACTGGGTATGAGGTCCCTTGCCTCATGGTTTCAGCAAAAGACGATCTTGATTCATCTCCTATTTCCATACA AGAATCCACCAGGgtagggttcttattgaactcagactcaatgaatatagctcgaataattccatacatatatatttatgcacacggatcttttcgcagA TGACACAAGATATGGGAATAGAGCCTCCGGTATCAATCAGCTCCAAATTGGGGGATTTCAACAATTTATTCCGCAAAATCTTAACTGCAGCACAACATCC TCATTTGAGCATTCCAGAGACCGAAGCAGGCAAAAGCCGCAAACATTACAACAGGCTAATCAACCGCTCTCTTATGGCCGTTTCCAgtacgttttctttc ctagaatcctgaatcttgactcaatttttgtcccaaacaaagaaaaacctgtaacggcttcagacccatgttgggtatacttaaatttcgatctcatgct atgtaaacaatttatctaatttctacctcgtgatttgtaaacagTTGGTGCTGCTGCTGTGGTCGTTGGGCTGGCTGCATACCGTGTGTATGCCACAAGA AAGAGCTCGTCTGCCTGAgaagattgagaatgaacaatccaatctcttaaggtatgaacacggaaagaggatagcaaatctcgtgtactgagtttgttta tcgttctcaaggttttacaacttgatccagagtactgttgagtactgttcttagaagtttaatggaaatgggctttgtttgaagtaattgtggaagaaga tctgtagcaaacacaaacatttagggacaagataaaaagagaacatagtcaatagacattgtgttgaatttcaataacaatagaactttgtctcctcgat gttgttaatcttgctcacgtttgctctgttctcggaattaaccagcaacactttaacatcaaatgaacaaaccattaattgcacaagatctctttagagt ttaacaaatcgacaacaatttgaagataaaaagataaaaaaaaaagcaacagaaaatcctattttgaagttttaacaggcgaccaaacaaacactttcac aaa
Border_1 (80307_RBD)
AATACGCGATAGAAAACAAAATATAGCGCGCAAACTAGGATAAATTATCGCGCGCGGTGTCATCTATGTTACTAGATCGGGAATTGAGCTCGCGGCCGCC
ATGGCATATGCTAGCATGCATAATTCCTGCAGAGCTCGCTTGAGCTTGGATCAGATTGTACGCTTAGACAACTTAACAAAAAAACTATCCTGCTGCGCGT
AATTTGAACTCAATTATTACGTACAAACTACATACAGAGAGGTATATTTCAACCAATCAAACAGCAGGACATATACCTGTCATACACGAAGACAGCTATG
TCACATGCAGCTAAGGATTCCTTGGATGAAAATAGCCCTTGAACTCCATCTTCTGGAATTTCCCTCATGATAAGAGTTTTCTTAGCACCCTACATTTAGA
GATTTGCCACTATCAGAATAATGACCAATTACATACCGAAACTTAGAGAAAGTAGCCATGAAGCATGTTGCCCAAAAATGTACATCCAAATAACATCTTC
AATCTCTCTGAACAGTTTTGTTTGAAATTTCCAAGTAAAAAAGCATGTATCCACCCATAGAGAAAACTCATCAAAGATATCTAGCTAGTTCCCATCTCAG
TCCCCAAAACAACACTGAAGTTTGTCATTTTTGTTCAGTATTTTGCACGTGGAAGATTTCTTTGCAAAGACAAAATATAACCAAACTAAAATACATATAT
NTTTATGCGCGCATACAAACATAACGATACAAATTTCATAAGTATACTGACTCACCGATTCATCGACCATATTTACTGCATAACGCTCATCAGTAGTTGA
TTCCTGGNTATCAGTATATGACCTAGATCATGGAGAACCAAACT
| Start of BLAST Alignment: | NT 3628 / Intron 12 of 14 (Intron 1 in 5’UTR) |
| First 15 bp Perfect Match: | NT 3628 / Intron 12 of 14 (Intron 1 in 5’UTR) |
BLAST Details: Query Sequence: 80307_RBD Length: (844 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g27540 68418.t02997 GTP-binding protein-related low si... 3167 4.9e-139 1 At5g17930 68418.t01908 MA3 domain-containing protein low ... 203 0.71 1 At3g30847 68416.t03637 pseudogene, hypothetical protein 181 0.996 1 >At5g27540 68418.t02997 GTP-binding protein-related low similarity to Mig-2-like GTPase Mtl [Drosophila melanogaster] GI:7271872; contains Pfam profile PF00036: EF hand Length = 5030 Minus Strand HSPs: Score = 3167 (481.2 bits), Expect = 4.9e-139, P = 4.9e-139 Identities = 635/638 (99%), Positives = 635/638 (99%), Strand = Minus / Plus Query: 842 TTTGGTTCTCCATGATCTAGGTCATATACTGATANCCAGGAATCAACTACTGATGAGCGT 783 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3382 TTTGTTTCTCCATGATCTAGGTCATATACTGATAACCAGGAATCAACTACTGATGAGCGT 3441 Query: 782 TATGCAGTAAATATGGTCGATGAATCGGTGAGTCAGTATACTTATGAAATTTGTATCGTT 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3442 TATGCAGTAAATATGGTCGATGAATCGGTGAGTCAGTATACTTATGAAATTTGTATCGTT 3501 Query: 722 ATGTTTGTATGCGCGCATAAANATATATGTATTTTAGTTTGGTTATATTTTGTCTTTGCA 663 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3502 ATGTTTGTATGCGCGCATAAATATATATGTATTTTAGTTTGGTTATATTTTGTCTTTGCA 3561 Query: 662 AAGAAATCTTCCACGTGCAAAATACTGAACAAAAATGACAAACTTCAGTGTTGTTTTGGG 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3562 AAGAAATCTTCCACGTGCAAAATACTGAACAAAAATGACAAACTTCAGTGTTGTTTTGGG 3621 Query: 602 GACTGAGATGGGAACTAGCTAGATATCTTTGATGAGTTTTCTCTATGGGTGGATACATGC 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3622 GACTGAGATGGGAACTAGCTAGATATCTTTGATGAGTTTTCTCTATGGGTGGATACATGC 3681 Query: 542 TTTTTTACTTGGAAATTTCAAACAAAACTGTTCAGAGAGATTGAAGATGTTATTTGGATG 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3682 TTTTTTACTTGGAAATTTCAAACAAAACTGTTCAGAGAGATTGAAGATGTTATTTGGATG 3741 Query: 482 TACATTTTTGGGCAACATGCTTCATGGCTACTTTCTCTAAGTTTCGGTATGTAATTGGTC 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3742 TACATTTTTGGGCAACATGCTTCATGGCTACTTTCTCTAAGTTTCGGTATGTAATTGGTC 3801 Query: 422 ATTATTCTGATAGTGGCAAATCTCTAAATGTAGGGTGCTAAGAAAACTCTTATCATGAGG 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3802 ATTATTCTGATAGTGGCAAATCTCTAAATGTAGGGTGCTAAGAAAACTCTTATCATGAGG 3861 Query: 362 GAAATTCCAGAAGATGGAGTTCAAGGGCTATTTTCATCCAAGGAATCCTTAGCTGCATGT 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3862 GAAATTCCAGAAGATGGAGTTCAAGGGCTATTTTCATCCAAGGAATCCTTAGCTGCATGT 3921 Query: 302 GACATAGCTGTCTTCGTGTATGACAGGTATATGTCCTGCTGTTTGATTGGTTGAAATATA 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3922 GACATAGCTGTCTTCGTGTATGACAGGTATATGTCCTGCTGTTTGATTGGTTGAAATATA 3981 Query: 242 CCTCTCTGTATGTAGTTTGTACGTAATAATTGAGTTCA 205 |||||||||||||||||||||||||||||||||||||| Sbjct: 3982 CCTCTCTGTATGTAGTTTGTACGTAATAATTGAGTTCA 4019 >At5g17930 68418.t01908 MA3 domain-containing protein low similarity to SP|Q9P6R9 Cell cycle control protein cwf22 {Schizosaccharomyces pombe}; contains Pfam profile PF02847: MA3 domain Length = 3577 Minus Strand HSPs: Score = 203 (36.5 bits), Expect = 1.2, P = 0.71 Identities = 261/476 (54%), Positives = 261/476 (54%), Strand = Minus / Plus
Border_2 (80307_LBU)
ATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATT
AAGTTGTCTAAGCGTCAATTTGTTTACACCGCAATGTGTTTGATGAGTCGTCATGGAAGAGAGCGACCCAGTTGCTTGTAGAAGTTGCAAATTATGGTGA
GGCCACTGGGTATGAGGTCCCTTGCCTCATGGTTTCAGCAAAAGACGATCTTGATTCATCTCCTATTTCCATACAAGAATCCACCAGGGTAGGGTTCTTA
TTGAACTCAGACTCAATGAATATAGCTCGAATAATTCCATACATATATATTTATGCACACGGATCTTTTCGCAGATGACACAAGATATGGGAATAGAGCC
TCCGGTATCAATCAGCTCCAAATTGGGGGATTTCAACAATTTATTCCGCAAAATCTTAACTGCAGCACAACATCCTCATTTGAGCATTCCAGAGACCGAA
GCAGGCCAAAAGCCCGCAAACATTACAACAGGCTAATCAACCGCTCTCTTATGGCCGTTTCCAGNACGTTTTCTTTNCTAGAATCCTGAATCTTGACTCA
ATTTTTTGNCCCAACCAAAGAAAAACCTGTAACGGGCTTCAGANCCCATGGTGGGGAAACTTAAAATTCGATCTCATGCTTTGNAAACAATTTTTTTTAA
TTTCTACCTCGGGGAATTGGAAACCAGTT
| Start of BLAST Alignment: | NT 3585 / Intron 12 of 14 (Intron 1 in 5’UTR) |
| First 15 bp Perfect Match: | NT 3644 / Exon 13 of 15 (Intron 1 in 5’UTR) |
BLAST Details: Query Sequence: 80307_LBU Length: (729 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g27540 68418.t02997 GTP-binding protein-related low si... 2683 2.0e-116 1 At3g42350 68416.t04039 hypothetical protein 1780 4.1e-76 1 At3g05310 68416.t00524 GTP-binding protein-related low si... 709 2.4e-26 1 At3g63150 68416.t06552 GTP-binding protein-related low si... 465 3.2e-15 1 >At5g27540 68418.t02997 GTP-binding protein-related low similarity to Mig-2-like GTPase Mtl [Drosophila melanogaster] GI:7271872; contains Pfam profile PF00036: EF hand Length = 5030 Plus Strand HSPs: Score = 2683 (408.6 bits), Expect = 2.0e-116, P = 2.0e-116 Identities = 597/654 (91%), Positives = 597/654 (91%), Strand = Plus / Plus Query: 78 AAAAACGTC-CGCAATGT-GTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCGCAAT 135 | | || || | |||| ||| || || | | || ||| |||| | || | Sbjct: 3977 ATATACCTCTCTGTATGTAGTTTGTACGTAATAATTGAGTTCATT-GTTTTCTCC--A-- 4031 Query: 136 GTGTTTGATGAGTCGTCATGGAAGAGAGCGACCCAGTTGCTTGTAGAAGTTGCAAATTAT 195 || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4032 GT-TCTGATGAGTCGTCATGGAAGAGAGCGACCCAGTTGCTTGTAGAAGTTGCAAATTAT 4090 Query: 196 GGTGAGGCCACTGGGTATGAGGTCCCTTGCCTCATGGTTTCAGCAAAAGACGATCTTGAT 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4091 GGTGAGGCCACTGGGTATGAGGTCCCTTGCCTCATGGTTTCAGCAAAAGACGATCTTGAT 4150 Query: 256 TCATCTCCTATTTCCATACAAGAATCCACCAGGGTAGGGTTCTTATTGAACTCAGACTCA 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4151 TCATCTCCTATTTCCATACAAGAATCCACCAGGGTAGGGTTCTTATTGAACTCAGACTCA 4210 Query: 316 ATGAATATAGCTCGAATAATTCCATACATATATATTTATGCACACGGATCTTTTCGCAGA 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4211 ATGAATATAGCTCGAATAATTCCATACATATATATTTATGCACACGGATCTTTTCGCAGA 4270 Query: 376 TGACACAAGATATGGGAATAGAGCCTCCGGTATCAATCAGCTCCAAATTGGGGGATTTCA 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4271 TGACACAAGATATGGGAATAGAGCCTCCGGTATCAATCAGCTCCAAATTGGGGGATTTCA 4330 Query: 436 ACAATTTATTCCGCAAAATCTTAACTGCAGCACAACATCCTCATTTGAGCATTCCAGAGA 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4331 ACAATTTATTCCGCAAAATCTTAACTGCAGCACAACATCCTCATTTGAGCATTCCAGAGA 4390 Query: 496 CCGAAGCAGGCCAAAAGCCCGCAAACATTACAACAGGCTAATCAACCGCTCTCTTATGGC 555 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 4391 CCGAAGCAGGC-AAAAGCC-GCAAACATTACAACAGGCTAATCAACCGCTCTCTTATGGC 4448 Query: 556 CGTTTCCAGNACGTTTTCTTTNCTAGAATCCTGAATCTTGACTCAATTTTTTGNCCCAAC 615 ||||||||| ||||||||||| ||||||||||||||||||||||||||||| | ||||| Sbjct: 4449 CGTTTCCAGTACGTTTTCTTTCCTAGAATCCTGAATCTTGACTCAATTTTT-GTCCCAAA 4507 Query: 616 CAAAGAAAAACCTGTAACGGGCTTCAGANCCCATGGTGGGGAAACTTAAAATTCGATCTC 675 |||||||||||||||||||| ||||||| |||||| |||| | ||||||| ||||||||| Sbjct: 4508 CAAAGAAAAACCTGTAACGG-CTTCAGA-CCCATGTTGGGTATACTTAAATTTCGATCTC 4565 Query: 676 ATGCTTTGNAAACAANNNNNNNNAATTTCTACCTCGGGGAATTGGAAACCAGTT 729 ||||| || |||||| ||||||||||||| | | ||| |||| |||| Sbjct: 4566 ATGCTATGTAAACAATTTATCT-AATTTCTACCTCGTG-ATTTGTAAAC-AGTT 4616 >At3g42350 68416.t04039 hypothetical protein Length = 2661 Plus Strand HSPs: Score = 1780 (273.1 bits), Expect = 4.1e-76, P = 4.1e-76 Identities = 412/471 (87%), Positives = 412/471 (87%), Strand = Plus / Plus