At5g62790 SYNGENTA 80523
Genomic Sequence (from TAIR)
aaaaagacagcatacaacatgttagtcaaaacatattcaatttaagatattcatatcaaaaattcataatacgaacgaataccataaactttttcttttt tattttgtaagagagaaatccttaaccattaatcccttgtaatgcatatttctaataataattatatttgacaaactatataattgatgatacagattct gctgtttaatactctaaagaaatcaaatagaaaatgggaacatagtaagactggattatttaccacttacaagttgtcgttaccttaataaaaaggtcct tgttactaaatgctcagcgaaatctttaaaaaatgacaaaaatctgttgggtaccattcaaatccagattcctttcttatcatcatctctctctctcaca ctgtttatctgattcgtcttctctgataatcaagagtagtagtgcggttctctggaaaatattcgatttttaaaagactctgATGATGACATTAAACTCA CTATCTCCAGCTGAATCCAAAGCTATTTCTTTCTTGGATACCTCCAGGTTCAATCCAATCCCTAAACTCTCAGgtttcttcttcttcctctcttctttcc tcctccttggtcaactctcttttcgattaaagttgcaaactttcattagttgtcttaggctcttgtgaatttctctatctaggtaatctgttatttcttc aattcgattttttttggtttgctttaggtcgtagagttttaaattttacatctttggagtgtttcacagGTGGGTTTAGTTTGAGGAGGAGGAATCAAGG GAGAGGTTTTGGAAAAGGTGTTAAGTGTTCAGTGAAAGTGCAGCAGCAACAACAACCTCCTCCAGCATGGCCTGGGAGAGCTGTCCCTGAGGCGCCTCGT CAATCTTGGGATGGACCAAAACCCATCTCTATCGTTGGATCTACTGGTTCTATTGGCACTCAGgttttatttcgattaaggcattattgtgcagttcttg agtatgaccagactttaagtttgtcttatgaatgactagactcatagaagaatgatatttttttcttactgagttattgttgcatcatttttatcgacaa gaacttccattttgcagACATTGGATATTGTGGCTGAGAATCCTGACAAATTCAGAGTTGTGGCTCTAGCTGCTGGTTCGAATGTTACTCTACTTGCTGA TCAGgtaagttggcttcatttgtaaaa►aaattagtattgagtctctccaatttgtcattcagaccacttggaattcagtttaattctcagttcagtggt agtatcataagcaaga◄tagtattaact◄cgttatgtatcagatcaaaccaga►gaaatcaggttctggtttaggcttttgcttctgcaatctcaagaaa tctctatagtatggttctgtgattctattttgaatggtggcagGTAAGGAGATTTAAGCCTGCATTGGTTGCTGTTAGAAACGAGTCACTGATTAATGAG CTTAAAGAGGCTTTAGCTGATTTGGACTATAAACTCGAGATTATTCCAGGAGAGCAAGGAGTGATTGAGgttagttcatttgttagttttgattgtagtg tagataggtttttacttattatgttcatcaacagGTTGCCCGACATCCTGAAGCTGTAACCGTTGTTACCGGAATAGTAGGTTGTGCGGGACTAAAGgta tatactctaattttttgttattaaaccttattaagaggatatgaaaaaagaaagttgcagatgataaagcttgttgcttatttttactgcagCCTACGGT TGCTGCAATTGAAGCAGGAAAGGACATTGCTCTTGCAAACAAAGAGACATTAATCGCAGGTGGTCCTTTCGTGCTTCCGCTTGCCAACAAACATAATGTA AAGATTCTTCCGGCAGATTCAGAACATTCTGCCATATTTCAGgtatcacaaatcacatagaattaagtacctcaactttcatattgagttcagcgttggt cttaatgcaagttcaacctctggcaatttgagtgaaaaatcttcttttatgttctctagTGTATTCAAGGTTTGCCTGAAGGCGCTCTGCGCAAGATAAT CTTGACTGCATCTGGTGGAGCTTTTAGgtttgtttcgatattcttctctctctgcatagactttttttcttctcaattctcgtttggttaatggaaactt ttcactggattttgaaaaagGGATTGGCCTGTCGAAAAGCTAAAGGAAGTTAAAGTAGCGGATGCGTTGAAGCATCCAAACTGGAACATGGGAAAGAAAA TCACTGTGGACTCTGCTACGCTTTTCAACAAGgttaagattattttctcctaaggttaaactctgattttgaaaatacctttgatcaaggtagatgagtt cttgattttttgaaacagGGTCTTGAGGTCATTGAAGCGCATTATTTGTTTGGAGCTGAGTATGACGATATAGAGATTGTCATTCATCCGCAAAGTATCA TACATTCCATGATTGAAACACAGgtcttgctgaaacattactaactaaattattatttttccggttttaaaaaaataactgtataacatgtatttgtttt gttccacagGATTCATCTGTGCTTGCTCAATTGGGTTGGCCTGATATGCGTTTACCGATTCTCTACACCATGTCATGGCCCGATAGAGTTCCTTGTTCTG AAGTAACTTGGCCAAGACTTGACCTTTGCAAgtaagctaaccacatttatatactctctgtttatcaagtgtgaagctaagcttagttgaaaattttaat tatcaccaagaaaagttccccaatcttgttttcagtttggttttaggttgtttagataagataaaaaatgaaaccgaatcggtcttcggtttggttttgc aattggttattttgctactgttttggtgtggatcagttaaactgggttaggaccactgccttatctatcagcattcagcacctaaaaccaaaagttgttt acaattgtggattttggcagACTCGGTTCATTGACTTTCAAGAAACCAGACAATGTGAAATACCCATCCATGGATCTTGCTTATGCTGCTGGACGAGCTG GAGGCACAATGACTGGAGTTCTCAGCGCCGCCAATGAGAAAGCTGTTGAAATGTTCATTGATGAAAAgtaagaattatttttcagttttgagcatctcaa tgaagttcttgatacgaatcacaattgtttatattctcacttttgtttacagGATAAGCTATTTGGATATCTTCAAGGTTGTGGAATTAACATGCGATAA ACATCGAAACGAGTTGGTAACATCACCGTCTCTTGAAGAGATTGTTCACTATGACTTGTGGGCACGTGAATATGCCGCGAATGTGCAGCTTTCTTCTGGT GCTAGGCCAGTTCATGCATGAagaattggttgttggaagaacataaggaagcttctgaggaaatgttgaaagaagattagtgtagagaatggggtactac ttaatagcgtttttggcaaggattatggattgtgtagctaatttatctgtgatccgaacaagccaaactgataatttgaaaccatttttaccaataaaac cgagcttaattgtttcacattatatgattaattacattcatctaagggttcttgaaaagcctctgagcttcatgagtagagttcgcatctcctgttgtcg tcattgggttcttgaaaagcctctgagcttcatgagtagagtttgcatctcctgttgtcggcattggtttcttgaaaaaactctcagtagagtttgcatc atcatgacgtgtgctacgtctgctagttgcttgagaattggccctcgatggttcttcttgttgcggagaaacagagactctgatgaatgtcctcccattg atcacctctgtcgatgatatattggtcatagccgaattctgaccacagtttggacaaggaaaggtcttgttaagatgattctgcgtcgaaaaatgacaac atctcgttgtgcatttattgcatactgtcgaaaaggtcatgctcactgtcgaaaaggtcatgtccaccggtttcgacgaagaagaagaagcaggctctgc aggc
Border_1 (80523_LB2U)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATGTGTTATTAAGATAGTATTA
ACTCTTGCTTATGATACTACCACTGAACTGAGAATTAAACTGAATTCCAAGTGGTCTGAATGACAAATTGGAGAGACTCAATACTAATTTTTTTACAAAT
GAAGCCAACTTACCTGATCAGCAAGTAGAGTAACATTCGAACCAGCAGCTAGAGCCACAACTCTGAATTTGTCAGGATTCTCAGCCACAATATCCAATGT
CTGCAAAATGGAAGTTCTTGTCGATAAAAATGATGCAACAATAACTCAGTAAGAAAAAAATATCATTCTTCTATGAGTCTAGTCATTCATAAGACAAACT
TAAAGTCTGGTCATACTCAAGAACTGCACAATAATGCCTTAATCGAAATAAAACCTGAGTGCCAATAGAACCAGTAGATCCAACGATAGAGATGGGTTTT
GGTCCATCCCAAGATTGACGAGGCGCCTCAGGGACAGCTCTCCCAGGCCATGCTGGAGGAGGTTGTTGTTGCTGCTGCACTTTCACTGAACACTTAACAC
CTTTTCCAAAACCTCTCCCTTGATTCCTCCTCCTCAAACTAAACCCACCTGTGAAACACTCCAAAGATGTAAAATTTAAAACTCTACGACCTAAAGCAAA
CCAAAAAAAATCGAATTGAAGGAAATAACAGATTACCTAGATAGAGAAATTCACAAGAGCCTAAGACAACTAATGAAAG
| Start of BLAST Alignment: | NT 844 / Intron 3 of 11 |
| First 15 bp Perfect Match: | NT 833 / Intron 3 of 11 |
BLAST Details: Query Sequence: 80523_LB2U Length: (879 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g62790 68418.t07276 1-deoxy-D-xylulose 5-phosphate red... 3322 7.4e-146 1 At1g53420 68414.t05552 serine/threonine protein kinase-re... 205 0.66 1 At3g61260 68416.t06335 DNA-binding family protein / remor... 195 0.93 1 At1g33170 68414.t03679 dehydration-responsive family prot... 190 0.995 1 >At5g62790 68418.t07276 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) nearly identical to 1-deoxy-d-xylulose-5-phosphate reductoisomerase [Arabidopsis thaliana] GI:4886307; contains Pfam profile PF02670: 1-deoxy-D-xylulose 5-phosphate reductoisomerase Length = 3315 Minus Strand HSPs: Score = 3322 (504.5 bits), Expect = 7.4e-146, P = 7.4e-146 Identities = 676/690 (97%), Positives = 676/690 (97%), Strand = Minus / Plus Query: 879 CTTTCATTAGTTGTCTTAGGCTCTTGTGAATTTCTCTATCTAGGTAATCTGTTATTTCCT 820 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 305 CTTTCATTAGTTGTCTTAGGCTCTTGTGAATTTCTCTATCTAGGTAATCTGTTATTTC-T 363 Query: 819 TCAATTCGANNNNNNNNGGTTTGCTTTAGGTCGTAGAGTTTTAAATTTTACATCTTTGGA 760 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 364 TCAATTCGATTTTTTTTGGTTTGCTTTAGGTCGTAGAGTTTTAAATTTTACATCTTTGGA 423 Query: 759 GTGTTTCACAGGTGGGTTTAGTTTGAGGAGGAGGAATCAAGGGAGAGGTTTTGGAAAAGG 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 424 GTGTTTCACAGGTGGGTTTAGTTTGAGGAGGAGGAATCAAGGGAGAGGTTTTGGAAAAGG 483 Query: 699 TGTTAAGTGTTCAGTGAAAGTGCAGCAGCAACAACAACCTCCTCCAGCATGGCCTGGGAG 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 484 TGTTAAGTGTTCAGTGAAAGTGCAGCAGCAACAACAACCTCCTCCAGCATGGCCTGGGAG 543 Query: 639 AGCTGTCCCTGAGGCGCCTCGTCAATCTTGGGATGGACCAAAACCCATCTCTATCGTTGG 580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 544 AGCTGTCCCTGAGGCGCCTCGTCAATCTTGGGATGGACCAAAACCCATCTCTATCGTTGG 603 Query: 579 ATCTACTGGTTCTATTGGCACTCAGGTTTTATTTCGATTAAGGCATTATTGTGCAGTTCT 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 604 ATCTACTGGTTCTATTGGCACTCAGGTTTTATTTCGATTAAGGCATTATTGTGCAGTTCT 663 Query: 519 TGAGTATGACCAGACTTTAAGTTTGTCTTATGAATGACTAGACTCATAGAAGAATGATAT 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 664 TGAGTATGACCAGACTTTAAGTTTGTCTTATGAATGACTAGACTCATAGAAGAATGATAT 723 Query: 459 TTTTTTCTTACTGAGTTATTGTTGCATCATTTTTATCGACAAGAACTTCCATTTTGCAGA 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 724 TTTTTTCTTACTGAGTTATTGTTGCATCATTTTTATCGACAAGAACTTCCATTTTGCAGA 783 Query: 399 CATTGGATATTGTGGCTGAGAATCCTGACAAATTCAGAGTTGTGGCTCTAGCTGCTGGTT 340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 784 CATTGGATATTGTGGCTGAGAATCCTGACAAATTCAGAGTTGTGGCTCTAGCTGCTGGTT 843 Query: 339 CGAATGTTACTCTACTTGCTGATCAGGTAAGTTGGCTTCATTTGTAAAAAAATTAGTATT 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 844 CGAATGTTACTCTACTTGCTGATCAGGTAAGTTGGCTTCATTTGTAAAAAAATTAGTATT 903 Query: 279 GAGTCTCTCCAATTTGTCATTCAGACCACTTGGAATTCAGTTTAATTCTCAGTTCAGTGG 220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 904 GAGTCTCTCCAATTTGTCATTCAGACCACTTGGAATTCAGTTTAATTCTCAGTTCAGTGG 963 Query: 219 TAGTATCATAAGCAAGAGTTAATACTATCT 190 ||||||||||||||||| | | || || || Sbjct: 964 TAGTATCATAAGCAAGA-T-AGTATTAACT 991 >At1g53420 68414.t05552 serine/threonine protein kinase-related contains 1 predicted transmembrane domain; low similarity to receptor-like serine/threonine kinase [Arabidopsis thaliana] GI:2465923 Length = 4869 Minus Strand HSPs: Score = 205 (36.8 bits), Expect = 1.1, P = 0.66 Identities = 269/467 (57%), Positives = 269/467 (57%), Strand = Minus / Plus
Border_2 (80523_LB1D)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGAAATCAGGTTCTGGTTT
AGGCTTTTGCTTCTGCAATCTCAAGAAATCTCTATAGTATGGTTCTGTGATTCTATTTTGAATGGTGGCAGGTAACGAGATTTAAGCCTGCATTGGTTGC
TGTTAGAAACGAGTCACTTGATTAATGAGCTTAAAGAGGCTTTTAGCTGATTTGGACTATAAACTCGAGATTATTCCAGGAGAGCAAGGAGTGATTGAGG
TTAGTTCATTTGTTAGTTTTGATTGTAGTGTAGATAGGTTTTTACTTATTATGTTCATCAACAGGTTGCCCGACATCCTGAAGCTGTAACCGTTGTTACC
GGAATAGTAGGTTGTGCGGGACTAAAGGTATATACTCTAATTTTTTGTTATTAAACCTTATTAAGAGGATATGAAAAAAGAAAGTTGCAGATGATAAAGC
TTGTTGCTTATTTTTACTGCAGCCTACGGTTGCTGCAATTGAAGCAGGAAAGGACATTGCTCTTGCAAACAAAGAGACATTAATCGCAGGTGGTCCTTTC
GTGCTTCCGCTTGCCAACAAACATAATGTAAAGATTCTTCCGGCAGATTCAGAACATTCTGCCATATTTCAGGTATCACAAATCACATAGAATTAAGTAC
CTCAACTTTCATATTGAGTTCAGCGTTGGTCTTAATGCAAGTTCAACCTCTGGCAATTTGAGTGAAAAATCTTCTTTTATGTTCTCTAGTGTATTCAAGG
TTTGCCTGAAGGCGCTCTGCGCA
| Start of BLAST Alignment: | NT 745 / Intron 3 of 11 |
| First 15 bp Perfect Match: | NT 868 / Intron 3 of 11 |
BLAST Details: Query Sequence: 80523_LB1D Length: (923 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At5g62790 68418.t07276 1-deoxy-D-xylulose 5-phosphate red... 3696 9.5e-163 1 At1g54960 68414.t05750 NPK1-related protein kinase, putat... 236 0.040 1 At4g14200 68417.t02076 expressed protein 165 0.67 2 At1g16800 68414.t01801 tRNA-splicing endonuclease positiv... 187 0.9998 1 >At5g62790 68418.t07276 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR) nearly identical to 1-deoxy-d-xylulose-5-phosphate reductoisomerase [Arabidopsis thaliana] GI:4886307; contains Pfam profile PF02670: 1-deoxy-D-xylulose 5-phosphate reductoisomerase Length = 3315 Plus Strand HSPs: Score = 3696 (560.6 bits), Expect = 9.5e-163, P = 9.5e-163 Identities = 810/870 (93%), Positives = 810/870 (93%), Strand = Plus / Plus Query: 65 ACACTAGCATCTGAATTTCATAACCAATCTCG-ATACA--CCAAATCGAATTCAATTCGG 121 | | ||| || ||| | || | ||||| | || || ||| | ||||||| || Sbjct: 893 AAATTAGTAT-TGAGTCTC-T--CCAATTTGTCATTCAGACCACTTGGAATTCAGTTTAA 948 Query: 122 CGTTAA-TTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTC-TA-AGC-G-T 176 | | |||||| || | | | |||| | |||||| | || | | | | | Sbjct: 949 TTCTCAGTTCAGTGG--TAGTATCATAAGCAAGATAGTATTAACTCGTTATGTATCAGAT 1006 Query: 177 CAATTT---GAAATCAGGTTCTGGTTTAGGCTTTTGCTTCTGCAATCTCAAGAAATCTCT 233 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1007 CAAACCAGAGAAATCAGGTTCTGGTTTAGGCTTTTGCTTCTGCAATCTCAAGAAATCTCT 1066 Query: 234 ATAGTATGGTTCTGTGATTCTATTTTGAATGGTGGCAGGTAACGAGATTTAAGCCTGCAT 293 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 1067 ATAGTATGGTTCTGTGATTCTATTTTGAATGGTGGCAGGTAAGGAGATTTAAGCCTGCAT 1126 Query: 294 TGGTTGCTGTTAGAAACGAGTCACTTGATTAATGAGCTTAAAGAGGCTTTTAGCTGATTT 353 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct: 1127 TGGTTGCTGTTAGAAACGAGTCACT-GATTAATGAGCTTAAAGAGGCTTT-AGCTGATTT 1184 Query: 354 GGACTATAAACTCGAGATTATTCCAGGAGAGCAAGGAGTGATTGAGGTTAGTTCATTTGT 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1185 GGACTATAAACTCGAGATTATTCCAGGAGAGCAAGGAGTGATTGAGGTTAGTTCATTTGT 1244 Query: 414 TAGTTTTGATTGTAGTGTAGATAGGTTTTTACTTATTATGTTCATCAACAGGTTGCCCGA 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1245 TAGTTTTGATTGTAGTGTAGATAGGTTTTTACTTATTATGTTCATCAACAGGTTGCCCGA 1304 Query: 474 CATCCTGAAGCTGTAACCGTTGTTACCGGAATAGTAGGTTGTGCGGGACTAAAGGTATAT 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1305 CATCCTGAAGCTGTAACCGTTGTTACCGGAATAGTAGGTTGTGCGGGACTAAAGGTATAT 1364 Query: 534 ACTCTAATTTTTTGTTATTAAACCTTATTAAGAGGATATGAAAAAAGAAAGTTGCAGATG 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1365 ACTCTAATTTTTTGTTATTAAACCTTATTAAGAGGATATGAAAAAAGAAAGTTGCAGATG 1424 Query: 594 ATAAAGCTTGTTGCTTATTTTTACTGCAGCCTACGGTTGCTGCAATTGAAGCAGGAAAGG 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1425 ATAAAGCTTGTTGCTTATTTTTACTGCAGCCTACGGTTGCTGCAATTGAAGCAGGAAAGG 1484 Query: 654 ACATTGCTCTTGCAAACAAAGAGACATTAATCGCAGGTGGTCCTTTCGTGCTTCCGCTTG 713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1485 ACATTGCTCTTGCAAACAAAGAGACATTAATCGCAGGTGGTCCTTTCGTGCTTCCGCTTG 1544 Query: 714 CCAACAAACATAATGTAAAGATTCTTCCGGCAGATTCAGAACATTCTGCCATATTTCAGG 773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1545 CCAACAAACATAATGTAAAGATTCTTCCGGCAGATTCAGAACATTCTGCCATATTTCAGG 1604 Query: 774 TATCACAAATCACATAGAATTAAGTACCTCAACTTTCATATTGAGTTCAGCGTTGGTCTT 833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1605 TATCACAAATCACATAGAATTAAGTACCTCAACTTTCATATTGAGTTCAGCGTTGGTCTT 1664 Query: 834 AATGCAAGTTCAACCTCTGGCAATTTGAGTGAAAAATCTTCTTTTATGTTCTCTAGTGTA 893 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1665 AATGCAAGTTCAACCTCTGGCAATTTGAGTGAAAAATCTTCTTTTATGTTCTCTAGTGTA 1724 Query: 894 TTCAAGGTTTGCCTGAAGGCGCTCTGCGCA 923 |||||||||||||||||||||||||||||| Sbjct: 1725 TTCAAGGTTTGCCTGAAGGCGCTCTGCGCA 1754 >At1g54960 68414.t05750 NPK1-related protein kinase, putative (ANP2) similar to protein kinase [Nicotiana tabacum] gi|456309|dbj|BAA05648; identical to cDNA NPK1-related protein kinase 2, partial cds GI:2342424 Length = 3928 Minus Strand HSPs: Score = 236 (41.5 bits), Expect = 0.041, P = 0.040 Identities = 160/268 (59%), Positives = 160/268 (59%), Strand = Minus / Plus