At3g54660 SYNGENTA 80750
Genomic Sequence (from TAIR)
acatacgttgataacacaaatcgtataactttctaacggtacagaaaatagtaaaccgtacaaaaataataaaaaagggtaagatgtagaagtataaaac taatagtacaaattaaaagattttggttccacttgtatgtataagtgattacatcaaaatggtattactaagtcatcatttagatttgatgaagtttgta ttcgtgtcataaaccgggcgtaggtggagttattgtcagtttggtagcgttttacgaccacacataaaaacatgtttataaattgttaaaaaacaataag acatgtcataaatctaaatgccacaagtagaattatcgaaataaagcttttacataaatacacacacccaaactaaaaaagaaaaaaaaaagaaagagag agagagaagaagaatcgtggagATGGCTTCGACCCCGAAGCTTACCAGTACAATTTCATCATCTTCTCCATCTCTTCAATTCCTCTGCAAAAAACTCCCA ATCGCAATTCATCTACCATCATCTTCTTCCTCTAGCTTTCTCTCGCTTCCTAAAACCCTAACCTCTCTCTATTCTCTCCGTCCCCGTATCGCCCTACTCT CAAACCACCGCTATTACCACTCTCGCCGGTTTTCTGTTTGTGCCAGTACCGATAATGGAGCTGAATCAGACCGCCACTACGATTTTGATCTCTTCACTAT CGGTGCCGGAAGCGGCGGCGTCCGCGCCTCTCGCTTCGCCACTAGCTTCGGTGCATCCGCCGCCGTTTGCGAGCTTCCTTTTTCCACTATCTCTTCCGAT ACTGCTGGAGGCGTTGGAGGAACgtaagatttcttccttcttgtggcttatatcgatagctagtgaatttgactttagtagtagctataccagaatttga agcatttgcttgatgatttatggtttgattgtgttgtctactcatttttggttattttgcagGTGTGTATTGAGAGGATGTGTACCAAAGAAGTTACTTG TGTATGCATCCAAATACAGTCATGAGTTTGAAGACAGTCATGGATTTGGTTGGAAGTATGAGACTGAGCCTTCTCATGATTGGACTACTTTGATTGCTAA CAAGAATGCTGAGTTACAGCGGTTGACTGGTATTTATAAGAATATACTGAGCAAAGCTAATGTCAAGTTGATTGAAGGTCGTGGAAAGgtatgccgaggc tcggtgtttatatagttcatgagttaacctctatgtattgatttgagcttgagtatgtattttatatgtgtagGTTATAGACCCACACACTGTTGATGTA GATGGGAAAATCTATACTACGAGGAATATTCTGATTGCAGTTGGTGGACGTCCTTTCATTCCTGACATTCCAGGAAAAGAGTTTGCTATTGATTCTGATG CCGCGCTTGATTTGCCTTCCAAGCCTAAGAAAATTGCAATAGTTGGTGGTGGCTACATAGCCCTGGAGTTTGCGGGGATCTTCAATGGTCTTAACTGTGA AGTTCATGTATTTATAAGGCAAAAGAAGGTGCTGAGGGGATTTGATGAAGATgtaagtaaaaaattgagaatgacttttgctgctttcatttatccgtct ggatattttctaattgtaattgttattcttgtttcagGTCAGGGATTTCGTTGGAGAGCAGATGTCTTTAAGAGGTATTGAGTTTCACACTGAAGAATCC CCTGAAGCCATCATCAAAGCTGGAGATGGCTCGTTCTCTCTGAAGACCAGCAAGGGAACTGTTGAGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCA AGCCCAACACAAAGgtatagtgtgatttttattattttccaaaggatgtttataaaatgaaaactggtagcaaagttcatcctttaataatttgtctaag ataaactgac◄cactgctgc►cccttgtttatgactttaatggaatatgattgttcattgatgtaatgttggctgttataacagAACTTAGGGTTGGAGA ATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATAGAGgtatgatccagtgttttacctagtttt◄tttgtcacttaggatttctattattgcattgtgc acagttctcttgttatacctggttacttcttgtgattgtgctccatgtttccactttttttttgtaagGTTGACGAATATTCACAGACATCTGTTCCATC CATCTGGGCTGTTGGGGATGTTACTGACCGAATCAATTTGACTCCAGTTGCTTTGATGGAGGGAGGTGCATTGGCTAAAACTTTGTTTCAAAATGAGCCA ACAAAGCCTGATTATAGgtaacataacaatcttaacttttgatgtttaaacctttgggattttttggtgattgatgagagtttttctctgtttagtctta catgctgcatcagtgatctataacattttataactgttgtctctgatggcttttatcctttctgtgttctataatcaactagAGCTGTTCCCTGCGCCGT TTTCTCCCAGCCACCTATTGGAACAGTTGGTCTAACTGAAGAGCAGgtaagtaggatgatttgtcaaaaatatggtttatcatgcatgccactacataga aatattaactacgtgtttgcagGCCATAGAACAATATGGTGATGTGGATGTTTACACATCGAACTTTAGGCCATTAAAGGCTACCCTTTCAGGACTTCCA GACCGAGTATTTATGAAACTCATTGTCTGTGCAAACACCAATAAAGTTCTCGGTGTTCACATGTGTGGAGAAGATTCACCAGAAATCATCCAGgtttcat tttttaacatgattggtattctctgaaaagtaatcacggaaaacatatatgattgaatatgaattttattttacaatttttcagGGATTTGGGGTTGCAG TTAAAGCTGGTTTAACTAAGGCCGACTTTGATGCTACAGTGGGTGTTCACCCCACAGCAGCTGAGGAGTTTGTCACTATGAGGGCTCCAACCAGGAAATT CCGCAAAGACTCCTCTGAGgtttgtttgtgaacagtcaaaacttatccatctagttatttctcgtggttttgcaacatgggaaaatgattggaactgagt gagatgtgtatgtccaatttcatttcagGGAAAGGCAAGTCCTGAAGCTAAAACAGCTGCTGGGGTGTAGagaaggttgcaaaaaagattgtatttacgg cattggagccccctgataaggtattcattcaccagtttccgaagtattggtcctaattcctaaaattagaaaagacatgcaatgcattagctcataccat gcttaagtaagatgtcaattagggccaaagctttgtttctgcccaccccggaaaaatagggtagactagaattctcctccataacggtgtttgatatttg acttgcatgtttgcaggagaacattgtgtctgtgaagaagaagcttttcttttggcagagaatattttttcataatgtcgtgtgaagatatgatcgctgt cctgcaatacttttgatcgtttgacacacgaccaaattcctcgagagagagaggttgtaactattccgaaagagctctaaaactgaagctttcagttctt gtgacatcataatgaaggctgtatagatataacagtttcgagttttatttggatttgtagtatttttgttttctattgtgttgaacttgtctctttgaag tcaccacgggagacctcatatcagcatcgttgcgaatcaaatgaggttttgagttttgacaagaaattcaacacgatcaccaaatccttgagtcattatc atattcagatttcagagtctcctaccataatcatatttatggttcgactgtacattattactgtttaaaattgatttgatttttgaaaagttaaaaacta atagttgactaaaaaattcataaacaaatatatactttttaaagagatacgttttgattaataacaaaaaggaaatatatacattaagtattataattaa tatacttatataactaaaaatcactattataagtaacaatatctctaaaactttgaatggccattaaatttttcaaaaatagatagaagaaagaattttt ttaaaaaagatatatccaagagatttccaactatgataaagcaaatatgtcataattatatttattggcttatcgcgacacgatttccagattcttatta tta
Border_1 (80750_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTCAGTCAGTTTATCTTAGACAAATTATTAAAGGATGAACT
TTGCTACCAGTTTTCATTTTATAAACATCCTTTGGAAAATAATAAAAATCACACCTATACCTTTGTGTTGGGCTTGCGACCAGTTGCAAACATAACATGC
GAAAATCCCTCAACAGTTCCCTTGCTGGTCTTCAGAGAGAACGAGCCATCTCCAGCTTTGATGATGGCTTCAGGGGATTCTTCAGTGTGAAACTCAATAC
CTCTTAAAGACATCTGCTCTCCAACGAAATCCCTGACCTGAAACAAGAATAACAATTACAATTAGAAAATATCCAGACGGATAAATGAAAGCAGCAAAAG
TCATTCTCAATTTTTTACTTACATCTTCATCAAATCCCCTCAGCACCTTCTTTTGCCTTATAAATACATGAACTTCACAGTTAAGACCATTGAAGATCCC
CGCAAACTCCAGGGCTATGTAGCCACCACCAACTATTGCAATTTTCTTAGGCTTGGAAGGCAAATCAAGCGCGGCATCAGAATCAATAGCAAACTCTTTT
CCTGGAATGTCAGGAATGAAAGGACGTCCACCAACTGCAATCAGAATATTCCTCGTAGTATAGATTTTCCCATCTACATCAACAGTGTGGTGGGTCTATA
ACCTACACATATAAAATACATACTCAAGCTCAAATCAATACATAGAGGTTAACTC
| Start of BLAST Alignment: | NT 1641 / Intron 5 of 9 |
| First 15 bp Perfect Match: | NT 1488 / Intron 4 of 9 |
BLAST Details: Query Sequence: 80750_LB2 Length: (855 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g54660 68416.t05607 gluthatione reductase, chloroplast... 3446 1.8e-151 1 At5g42160 68418.t04776 GDSL-motif lipase/hydrolase protei... 187 0.99 1 At1g63940 68414.t06630 monodehydroascorbate reductase, pu... 185 0.9999 1 >At3g54660 68416.t05607 gluthatione reductase, chloroplast nearly identical to SP|P42770 Glutathione reductase, chloroplast precursor (EC 1.8.1.7) (GR) (GRASE) {Arabidopsis thaliana}; identical to cDNA glutathione reductase GI:451197 Length = 3438 Minus Strand HSPs: Score = 3446 (523.1 bits), Expect = 1.8e-151, P = 1.8e-151 Identities = 778/856 (90%), Positives = 778/856 (90%), Strand = Minus / Plus Query: 855 GAGTTAACCTCTATGTATTGATTTGAGCTTGAGTATGTATTTTATATGTGTAGGTTATAG 796 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 881 GAGTTAACCTCTATGTATTGATTTGAGCTTGAGTATGTATTTTATATGTGTAGGTTATAG 940 Query: 795 ACCCACCACACTGTTGATGTAGATGGGAAAATCTATACTACGAGGAATATTCTGATTGCA 736 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 941 ACCCAC-ACACTGTTGATGTAGATGGGAAAATCTATACTACGAGGAATATTCTGATTGCA 999 Query: 735 GTTGGTGGACGTCCTTTCATTCCTGACATTCCAGGAAAAGAGTTTGCTATTGATTCTGAT 676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1000 GTTGGTGGACGTCCTTTCATTCCTGACATTCCAGGAAAAGAGTTTGCTATTGATTCTGAT 1059 Query: 675 GCCGCGCTTGATTTGCCTTCCAAGCCTAAGAAAATTGCAATAGTTGGTGGTGGCTACATA 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1060 GCCGCGCTTGATTTGCCTTCCAAGCCTAAGAAAATTGCAATAGTTGGTGGTGGCTACATA 1119 Query: 615 GCCCTGGAGTTTGCGGGGATCTTCAATGGTCTTAACTGTGAAGTTCATGTATTTATAAGG 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1120 GCCCTGGAGTTTGCGGGGATCTTCAATGGTCTTAACTGTGAAGTTCATGTATTTATAAGG 1179 Query: 555 CAAAAGAAGGTGCTGAGGGGATTTGATGAAGATGTAAGTAAAAAATTGAGAATGACTTTT 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1180 CAAAAGAAGGTGCTGAGGGGATTTGATGAAGATGTAAGTAAAAAATTGAGAATGACTTTT 1239 Query: 495 GCTGCTTTCATTTATCCGTCTGGATATTTTCTAATTGTAATTGTTATTCTTGTTTCAGGT 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1240 GCTGCTTTCATTTATCCGTCTGGATATTTTCTAATTGTAATTGTTATTCTTGTTTCAGGT 1299 Query: 435 CAGGGATTTCGTTGGAGAGCAGATGTCTTTAAGAGGTATTGAGTTTCACACTGAAGAATC 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1300 CAGGGATTTCGTTGGAGAGCAGATGTCTTTAAGAGGTATTGAGTTTCACACTGAAGAATC 1359 Query: 375 CCCTGAAGCCATCATCAAAGCTGGAGATGGCTCGTTCTCTCTGAAGACCAGCAAGGGAAC 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1360 CCCTGAAGCCATCATCAAAGCTGGAGATGGCTCGTTCTCTCTGAAGACCAGCAAGGGAAC 1419 Query: 315 TGTTGAGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGGTATA 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1420 TGTTGAGGGATTTTCGCATGTTATGTTTGCAACTGGTCGCAAGCCCAACACAAAGGTATA 1479 Query: 255 GGTGTGATTTTTATTATTTTCCAAAGGATGTTTATAAAATGAAAACTGGTAGCAAAGTTC 196 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1480 G-TGTGATTTTTATTATTTTCCAAAGGATGTTTATAAAATGAAAACTGGTAGCAAAGTTC 1538 Query: 195 ATCCTTTAATAATTTGTCTAAGATAAACTGACTGAATAA--CACATTGCGGACGTTTTTA 138 |||||||||||||||||||||||||||||||| | | | | ||| | | |||| Sbjct: 1539 ATCCTTTAATAATTTGTCTAAGATAAACTGACC-ACTGCTGCCCCTTGTTTATGACTTTA 1597 Query: 137 ATGTACTGAATTAACGCCGAATTGAATTCGAT-TTGG-TGT-ATCGAGATTGGTTATGAA 81 ||| | | | | | | | |||| | || |||| ||| || | | ||| | Sbjct: 1598 ATGGAAT-A-TGATTGTTCA-TTGATGTA-ATGTTGGCTGTTATA-ACAGAACTTAGGGT 1652 Query: 80 ATTCAGA-TGCTAGTGTAATGTATTG-GTAATTTGG-GAAGATATAA-TAGGAAGCAAGG 25 | ||| || | | || | || | | || ||| | | ||| | || || || | Sbjct: 1653 -TGGAGAATGTTGGCGTTAAA-ATGGCGAAAAATGGAGCA-ATAGAGGTATGATCCAGTG 1709 Query: 24 CTATTTATCCATTTCT 9 | |||| | | || | Sbjct: 1710 -T-TTTACCTAGTTTT 1723 >At5g42160 68418.t04776 GDSL-motif lipase/hydrolase protein-related similar to SP|P40602 Anther-specific proline-rich protein APG precursor {Arabidopsis thaliana}, family II lipases EXL3 GI:15054386, EXL1 GI:15054382, EXL2 GI:15054384 from [Arabidopsis thaliana] Length = 750 Plus Strand HSPs: Score = 187 (34.1 bits), Expect = 4.4, P = 0.99 Identities = 147/248 (59%), Positives = 147/248 (59%), Strand = Plus / Plus
Border_2 (80750_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTCCCTTGTTTATGACTTTA
ATGGAATATGATTGTTCATTGATGTAATGTTGGCTGTTATAACAGAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATAGAGG
TATGATCCAGTGTTTTACCTAGTTTTTTTGTCACTTAGGATTTCTATTATTGCATTGTGCACAGTTCTCTTGTTATACCTGGTTACTTCTTGTGATTGTG
CTCCATGTTTCCACTTTTTTTT
| Start of BLAST Alignment: | NT 1497 / Intron 4 of 9 |
| First 15 bp Perfect Match: | NT 1497 / Intron 4 of 9 |
BLAST Details: Query Sequence: 80750_LB1 Length: (422 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At3g54660 68416.t05607 gluthatione reductase, chloroplast... 1160 6.9e-47 1 At4g14570 68417.t02119 acylaminoacyl-peptidase-related si... 185 0.79 1 At1g19860 68414.t02225 zinc finger (CCCH-type) family pro... 175 0.994 1 >At3g54660 68416.t05607 gluthatione reductase, chloroplast nearly identical to SP|P42770 Glutathione reductase, chloroplast precursor (EC 1.8.1.7) (GR) (GRASE) {Arabidopsis thaliana}; identical to cDNA glutathione reductase GI:451197 Length = 3438 Plus Strand HSPs: Score = 1160 (180.1 bits), Expect = 6.9e-47, P = 6.9e-47 Identities = 232/232 (100%), Positives = 232/232 (100%), Strand = Plus / Plus Query: 183 CCCTTGTTTATGACTTTAATGGAATATGATTGTTCATTGATGTAATGTTGGCTGTTATAA 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1580 CCCTTGTTTATGACTTTAATGGAATATGATTGTTCATTGATGTAATGTTGGCTGTTATAA 1639 Query: 243 CAGAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATAGAGGTA 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1640 CAGAACTTAGGGTTGGAGAATGTTGGCGTTAAAATGGCGAAAAATGGAGCAATAGAGGTA 1699 Query: 303 TGATCCAGTGTTTTACCTAGTTTTTTTGTCACTTAGGATTTCTATTATTGCATTGTGCAC 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1700 TGATCCAGTGTTTTACCTAGTTTTTTTGTCACTTAGGATTTCTATTATTGCATTGTGCAC 1759 Query: 363 AGTTCTCTTGTTATACCTGGTTACTTCTTGTGATTGTGCTCCATGTTTCCAC 414 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1760 AGTTCTCTTGTTATACCTGGTTACTTCTTGTGATTGTGCTCCATGTTTCCAC 1811 >At4g14570 68417.t02119 acylaminoacyl-peptidase-related similar to Acylamino-acid-releasing enzyme (EC 3.4.19.1) (Acyl-peptide hydrolase) (APH) (Acylaminoacyl-peptidase) (Swiss-Prot:P13676) [Rattus norvegicus]; annotated with nonconsensus TT and CT acceptor splice sites. Length = 4068 Plus Strand HSPs: Score = 185 (33.8 bits), Expect = 1.5, P = 0.79 Identities = 187/322 (58%), Positives = 187/322 (58%), Strand = Plus / Plus