At4g04350 SYNGENTA 81281
Genomic Sequence (from TAIR)
taaatttgaacatcgtgacttgttaagtttggtgagaggggaataaggaacgttctatatgtaaagcaatgataattaagagttaaggagttcatagttc atgtttttctctagtttggacttgagtccaaaatccaaattaatccaaaacaatgttgagcctaaactgtcccaagactcccaacaactcaggaagctct tgctgttttccttttaatcattgtgatattacattcttgatcgtcccacagggaaaatattttagccgttagaccaaatgataaaaaactgtaactgttg atgggaacggcgtcgtttcgctaaccttcgttttaactgatctcaattctcaaggttcaaaagagtacacacacacttatctcaattatccactgaaaca ttcgtctccggcgaaacaaaaccagaATGAGCTCTCATCATCAAATCCTCCAAATTCGTTCTGACCCATTTGTTCTATCACACTGTTGCCGCCACACACG CCTCACCAGCTCTCTTACGCTTCAATCTCCTCTAAAGCAGCCCTTTTCATGTCTCCCTTTCCGTTGGCGCCGCTCTTATCGCGGCGGAGTCAGGAGCTCA ACGACGGAGACTCATGGTAGCAAAAAAGAAGCTTTGGTGTCGGAAACGGCGACTACATCGATTGAATTGAAAAGGGTCTATCCATTTCACGAAATTGAAC CCAAGTGGCAACGTTATTGGGAAGATAACCGAATTTTCCGGACACCAGACGATGTTGATACTTCGAAACCTAAGTTCTACGTCCTCGACATGTTTCCATA TCCAAGgtctcttccttttaatactgattatgtagaaagttcacagatttggctattccagcttaaagaaatgaactttgtggttttgagaagtttccat tgatttcagtagcatccttggttaggattttgaatagatgataggttttcagattttgggttttgtggaaaagatgaaatttttgtgtgtgttttgtggt ttgttcttcagTGGAGCAGGATTACATGTGGGACATCCATTGGGTTATACAGCAACTGATATTCTAGCGAGGCTTAGGCGTATGCAAGGTTACAATGTGT TGCATCCTATGGGTTGGGATGCTTTTGGATTGCCTGCTGAACAATATGCTATTGAGgtccattttttttctctgttctcaagtcattatgtatggatgtt tttgttgataaaatttgtgtccttagtatttgtaatctgcattgcagACAGGAACCCATCCGAAAACTACGACATTGAAGAACATTGACCGCTTTCGATT GCAGgtgatatatttctttcaatctagcactagcctagaaaagttactattctcttctattcatcatttccctaacagaagaaatttctcagttttgtta tcggtttcgttgtgagaaatttatgcttgtttcatggtttaggattactgatccttgaagattatgcaaaagccattactttggactgttttgcttaggt cttaccatgggagtaaagatctggggaccttaacaattgtagttcttttgtttgtttgcagCTCAAATCATTGGGCTTCTCATACGATTGGGACCGTGAA CTTTCTACAACAGAGCCAGACTACTACAAATGGACACAATGGATCTTTCTTCAGCTTTATAAGAAAGGTTTGGCATATCAGgtcaacaaaatcaatgtct agttcacatgttaaaaccgtgcatttgtgtatagaaaagttctttgaaagattgtaaactcagGCTGAAGTACCGGTCAATTGGTGCCCGGCTCTTGGTA CTGTTTTGGCCAATGAAGAAGTGGTGGATGGTGTTAGTGAGCGTGGTGGCCACCCGGTTATAAGAAAGgtactatctattaccatctgggaatattatgt cgtttttcccctttcgaaatctgtatttcctctgttttgaaaattctcatgaattttacagtgacattgtttattaccaagcagCCGATGAGGCAATGGA TGCTGAAGATTACTGCGTACGCTGATCGTCTTCTAGAAGATTTGGACGAGCTTGAGTGGCCTGAAAGTATAAAGGAAATGCAAAGAAACTGGATAGGAAG ATCCGAAGGAGCTGAGTTGAACTTTTCAATTCTTGATGGGGAAGGCCGAGAAACTGACAAAGAGATTACAGTGTACACCACGAGGCCAGATACACTTTTT GGAGCAACgtatgcttaaaggattaattatatattcaacatctgaaatcttgatcttgattgtcttaatatgatatttgcttccattcgcagTTACATGG TTGTGGCACCAGAGCATCAGTTGTTGTCTTACTTTGTAACCGCAGAACAGAAACAGCAAgtaagagttttttcttctttcgattattcaacttgcctttc agattttcatgagttctctcttatggttgcagGTTGAGGAATACAAAGATTTCGCTTCGAGGAAAAGTGATCTTGAGAGAACAGAACTTCAGAAGGACAA GACGGGCGTATTTACGGGATGTTATGCGAAAAATCCAGCTAATGGAGATGCTATTCCCATATGGGTAGCTGATTATGTTCTAGCTAGgttagtttggtct aactgtttacattgccttgaaatgaatttgtgtgaaacagagaacgttgttatatgtgacagTTATGGAACCGGAGCAATCATGGCGGTCCCAGCTCATG ATACTCGGGATAATGAGTTTGCGTTGAAGTATAACATTCCCATCAAGTGGGTAGTGAGAAATGAGGCAAATTCAAGTGATGATGCTAAGCAGGTTTATCC CGGATTGGGCATTATTGAAAATTCTTCAACTTTAGAAACAGGACTTGACATAAATCAACTATCTAGCAAAGAAGCTGCTTTAAAAGTTATTGAATGGGCT GAGAGAACTGGCAATGGAAAGAAAAAGgttcatcttcatgtctttctcatttggattatgtaaaaagtgttctacttttcttacaca◄aaaggtttttgg cagGTAAATTACAAGTTGAGGGATTGGC►TA►TTTGCACGGCAGCGTTACTGGGGTGAACCTATCCCGATTTTAATTTTGGATGAGTCTGGTGAAACTAT TGCTATTTCAGAATCTGAACTGCCCCTCACTTTGCCTGAGTTAAATGATTTTACGCCCACTGGAACAGGGGAACCACCACTGTCAAAAGCAGTTTCATGG gtatgttttgcggttaatatgattagtttttgggtatgcctatgccatggacattttggttatgatcgatgactttgcagGTGAACACTGTAGATCCTTC AACAGGAAAACCTGCCAAAAGAGAAACAAGCACTATGCCACAATGGGCTGGGTCTTGCTGgtagatatttacccttcttaattcttgtatataacctcct cattacaaaaaatgtatctcccatttgagaatccttgatgctctctcatagtgatggttctaggataggccgaattcgatcttgaaccttgttgaatata gtacccagtgtgttgttgaaggatgttgattttaatactgagaaactgaacaaaattacatgatttttcagGTACTATCTGAGATTCATGGACCCGAAAA ACCCTGAAGCATTAGTTGACAAGGAAAAAGAAAAgtgagagcatttcagaatgcaatcattatgtgccatctttggccagatctttaagtttttattttg gtgtggcagATACTGGAGCCCAGTAGATGTATATGTTGGTGGTGCTGAGCATGCTGTTTTACATTTACTATACTCGAGGTTTTGGCACAAGgtgtgtatc ctttgaaacctccctttctttaagttatattgtgatctaactacaaattttgttactgcatcattccagGTACTTTATGACATTGGTGTTGTGTCTACGA AAGAACCATTCAAATGTGTCATAAATCAAGGAATCATCCTTGGGGAAgtaagtcgtcttttgcaccgcctttttcaaatttactcattccgttgaatgtt ttctgcttaattgttttacttttgcagGTCCAATATACAGCTTGGAAAGATCAAGAAGGAAATTATGTATCTGCAGATACTGAAGAACGGTTAAATGAAC ATCAACAAGTGACAATCCCGGAAGAAAAAgtatgaatcttcattctcattcactaaaactgataagctctccagtgtttttaatcttatgatctttaatg gtctagGTTATCAAGTCCGGAGATCATTTTGTTCTGAAGGAGGATCCTAGCATTCGTCTGATTCCACGCGTTTATAAAATGAGCAAAAGTAGAGGAAATG TCGTAAATCCTGATGATGTTGTATTAGAGTATGGTGCAGATTCTCTACGTTTGTATGAGATGTTCATGGGACCATTTAGgtatatctcaatcccaaattt gttttttcgggttttctcgctttctcaatgtttatatctgccttcatttccttctactagGGACTCAAAAACTTGGAACACGAGTGGGATTGAAGGTGTG CATCGTTTCTTGGCAAGAACTTGGAGACTAGTCATTGGTTTGCCTCAGTCTGATGGTTCTTTCAAAGATGGAACCTTAGTAACTGATGACGAACCAACCC TTGAACAACTCCGAACTCTTCATAAATGCATTGCAAAGgtcatctcatccccttatgatctctttgcggtttgtttacatcttacttaaaataggtatgt aaaatctgcagGTGACAGAGGAAATCGAGAGTACACGATTCAACACGGGAATTTCAGGGATGATGGAGTTTGTTAATGCGGCATATAAGgttagtcttag actcttatatcggtcagctttgtgttttcactttacaagtactgatcttttctccggtttcttcttttactttgacagTGGAATAATCAACCTAGAGGAA TCATTGAGCCTTTTGTTCTTTTGCTCTCACCTTACGCGCCTCACATGGCTGAAGAGCTTTGGTCGCGGTTAGGCCATCCAAATTCTCTGGCCTATGAAAG CTTCCCTAAGgtagagatagtaaactgaacatataaacacaacacaggaaggtgttttgcggtactgattgttgtggtatttgtgcagGCAAACCCGGAT TACTTAAAGAACACAACTATTGTTCTTCCAGTTCAGATAAACGGCAAGACAAGAGGCACCATAGAGGTTGAAGAAGGATGCTCTGAAGATGATGCTTTTG TTCTAGCTTCACAGGACGACAAACTCAGGAAATATCTAGATGGACAATCAATCAAGAAGCGAATCTATGTGCCTGGGAAGATCCTCAACGTTATCCTAGA CCGGACTAATGTCAAGGTCACTACAAAGTAGgatttagaaagaagaaacaattacaaaacctgtcaaatgaacaaaattttatctctattgagagtttcc attatatagaaaaagattcttttagaagcaaaagatctgttcTTAGATAACATCAGAAGCAACAGTTCCTTCTTTCCATCCTCCTTGCCGAGCTCGAAGC TCCCACATGTAAGAAAGTCTTCTCTGTTCATCTAGAGCTGCTTCTGCTTTCTCTCTTGCTAGCTCACATGTTTCCATCCCCATACTGCATTTATCAGCCT CTTTCTGATACTGAGACGCCGCTTTCTTAGCATCTAGCAGCAACCTATCTGCACGCCATTCGTCTTCTTGAGCTTGTGCTTCTCTTAGCTTCAGCTCTTC AGCTACCATTTCAGTAAAACTACTCTCGCTCTCTTCACTCCCTTCCTCGTGCCTCATGCAATCTTGGCAATGAAACAAGATCCAACCAAAATGCACGTGA AATCTGCGACGTTTTAGCATtcttactaaatatataaaaagttattaccagaaaaatactcacctaagaaactgtgattgcttaatcctgcagaagaaac attgaatcaaacgtttcaaaagttgggttttgtgaccagggaaagaagaaaggaaagacaacgataatgatgatgattaccgtcgggaatggagaggaga ggctgagaagaacaatcacatacacaaggaggacaagaggagtggagagaatctgcaatggtctcattgagatgccaatacagagacggtcctgcaatat atgcgacaatacacagtcccattaccactgttaccaccttcgccgtcttcttctgccttctggtcatctctctctatttctttctctctgcaaattaatg gtgtcttctcttttgtttgaatcttagaagattctcagtaactgttctccttgaaatgtcccccaagtattggatcctttcaagacttcacgcatcatta gat
Border_1 (81281_RB1)
CAAACTAGGATAAATTATCGCGCGCGGTGTCATCTATGTTACTAGATCGGGAATTGAGCTCGCGGCCGCCATGGCATATGCTAGCATGCATAATTCCTGC
AGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATCAGTGTGTAAGAAAAGTAGAACACTTTTTACATAATCCAAATGAG
AAAGACATGAAGATGAACCTTTTTCTTTCCATTGCCAGTTCTCTCAGCCCATTCAATAACTTTTAAAGCAGCTTCTTTGCTAGATAGTTGATTTATGTCA
AGTCCTGTTTCTAAAGTTGAAGAATTTTCAATAATGCCCAATCCGGGATAAACCTGCTTAGCATCATCACTTGAATTTGCCTCATTTCTCACTACCCACT
TGATGGGAATGTTATACTTCAACGCAAACTCATTATCCCGAGTATCATGAGCTGGGACCGCCATGATTGCTCCGGTTCCATAACTGTCACATATAACAAC
GTTCTCTGTTTCACACAAATTCATTTCAAGGCAATGTAAACAGTTAGACCAAACTAACCTAGCTAGAACATAATCAGCTACCCATATGGGAATAGCATCT
CCATTAGCTGGATTTTTCGCATA:ACATCCCGTAAATACGCCCGTCTTGTCCTTCTGAAGTTCTGTTCTCTCAAGATCACTTTTCCTCGAAGCGAAATCT
TTGCATTCCTCAACCTGCAACCATAAGAGAGAACTCATGAAAATCTGAAAGGCAAGTTGAATAATCGAAAGAAGAAAAAACTCTTACTTGCTGGTTCTGG
TCTGCGGTTACCAAGNAAGACAACAACTGATGCTCTGGGGCCCCACCNTGNAACCTGCGAATG
| Start of BLAST Alignment: | NT 2561 / Intron 9 of 19 |
| First 15 bp Perfect Match: | NT 2561 / Intron 9 of 19 |
BLAST Details: Query Sequence: 81281_RB1 Length: (862 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g04350 68417.t00574 leucyl-tRNA synthetase, putative /... 3420 1.8e-150 1 >At4g04350 68417.t00574 leucyl-tRNA synthetase, putative / leucine--tRNA ligase, putative similar to SP|P36430 Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase) (LeuRS) {Bacillus subtilis}; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V) Length = 5039 Minus Strand HSPs: Score = 3420 (519.2 bits), Expect = 1.8e-150, P = 1.8e-150 Identities = 694/705 (98%), Positives = 694/705 (98%), Strand = Minus / Plus Query: 862 CATTCGCAGGTTNCANGGTGG-GGCCCCAGAGCATCAGTTGTTGTCTTNCTTGGTAACCG 804 ||||||||| || || ||| | ||| |||||||||||||||||||||| ||| ||||||| Sbjct: 1897 CATTCGCAG-TTACATGGTTGTGGCACCAGAGCATCAGTTGTTGTCTTACTTTGTAACCG 1955 Query: 803 CAGACCAGAACCAGCAAGTAAGAGTTTTTTCTTCTTTCGATTATTCAACTTGCCTTTCAG 744 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1956 CAGAACAGAAACAGCAAGTAAGAGTTTTTTCTTCTTTCGATTATTCAACTTGCCTTTCAG 2015 Query: 743 ATTTTCATGAGTTCTCTCTTATGGTTGCAGGTTGAGGAATGCAAAGATTTCGCTTCGAGG 684 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2016 ATTTTCATGAGTTCTCTCTTATGGTTGCAGGTTGAGGAATACAAAGATTTCGCTTCGAGG 2075 Query: 683 AAAAGTGATCTTGAGAGAACAGAACTTCAGAAGGACAAGACGGGCGTATTTACGGGATGT 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2076 AAAAGTGATCTTGAGAGAACAGAACTTCAGAAGGACAAGACGGGCGTATTTACGGGATGT 2135 Query: 623 TATGCGAAAAATCCAGCTAATGGAGATGCTATTCCCATATGGGTAGCTGATTATGTTCTA 564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2136 TATGCGAAAAATCCAGCTAATGGAGATGCTATTCCCATATGGGTAGCTGATTATGTTCTA 2195 Query: 563 GCTAGGTTAGTTTGGTCTAACTGTTTACATTGCCTTGAAATGAATTTGTGTGAAACAGAG 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2196 GCTAGGTTAGTTTGGTCTAACTGTTTACATTGCCTTGAAATGAATTTGTGTGAAACAGAG 2255 Query: 503 AACGTTGTTATATGTGACAGTTATGGAACCGGAGCAATCATGGCGGTCCCAGCTCATGAT 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2256 AACGTTGTTATATGTGACAGTTATGGAACCGGAGCAATCATGGCGGTCCCAGCTCATGAT 2315 Query: 443 ACTCGGGATAATGAGTTTGCGTTGAAGTATAACATTCCCATCAAGTGGGTAGTGAGAAAT 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2316 ACTCGGGATAATGAGTTTGCGTTGAAGTATAACATTCCCATCAAGTGGGTAGTGAGAAAT 2375 Query: 383 GAGGCAAATTCAAGTGATGATGCTAAGCAGGTTTATCCCGGATTGGGCATTATTGAAAAT 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2376 GAGGCAAATTCAAGTGATGATGCTAAGCAGGTTTATCCCGGATTGGGCATTATTGAAAAT 2435 Query: 323 TCTTCAACTTTAGAAACAGGACTTGACATAAATCAACTATCTAGCAAAGAAGCTGCTTTA 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2436 TCTTCAACTTTAGAAACAGGACTTGACATAAATCAACTATCTAGCAAAGAAGCTGCTTTA 2495 Query: 263 AAAGTTATTGAATGGGCTGAGAGAACTGGCAATGGAAAGAAAAAGGTTCATCTTCATGTC 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2496 AAAGTTATTGAATGGGCTGAGAGAACTGGCAATGGAAAGAAAAAGGTTCATCTTCATGTC 2555 Query: 203 TTTCTCATTTGGATTATGTAAAAAGTGTTCTACTTTTCTTACACA 159 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2556 TTTCTCATTTGGATTATGTAAAAAGTGTTCTACTTTTCTTACACA 2600
Border_2 (81281_RB2)
CAAACTAGGATAAATTATCGCGCGCGGTGTCATCTATGTTACTAGATCGGGAATTGAGCTCGCGGCCGCCATGGCATATGCTAGCATGCATAATTCCTGC
AGAGCTCGCTTGAGCTTGGATCAGATTGTCGTTTCCCGCCTTCAGTTTAAACTATCAGTGTTTGCACGGCAGCGTTACTGGGGTGAACCTATCCCGATTT
TAATTTTGGATGAGTCTGGTGAAACTATTGCTATTTCAGAATCTGAACTGCCCCTCACTTTGCCTGAGTTAAATGATTTTACGCCCACTGGAACAGGGGA
ACCACCACTGTCAAAAGCAGTTTCATGGGTATGTTTTGCGGTTAATATGATTAGTTTTTGGGTATGCCT
| Start of BLAST Alignment: | NT 2602 / Exon 10 of 20 |
| First 15 bp Perfect Match: | NT 2604 / Exon 10 of 20 |
BLAST Details: Query Sequence: 81281_RB2 Length: (369 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g04350 68417.t00574 leucyl-tRNA synthetase, putative /... 1046 1.5e-41 1 >At4g04350 68417.t00574 leucyl-tRNA synthetase, putative / leucine--tRNA ligase, putative similar to SP|P36430 Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase) (LeuRS) {Bacillus subtilis}; contains Pfam profile PF00133: tRNA synthetases class I (I, L, M and V) Length = 5039 Plus Strand HSPs: Score = 1046 (163.0 bits), Expect = 1.5e-41, P = 1.5e-41 Identities = 210/211 (99%), Positives = 210/211 (99%), Strand = Plus / Plus Query: 159 TGTTTGCACGGCAGCGTTACTGGGGTGAACCTATCCCGATTTTAATTTTGGATGAGTCTG 218 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2641 TATTTGCACGGCAGCGTTACTGGGGTGAACCTATCCCGATTTTAATTTTGGATGAGTCTG 2700 Query: 219 GTGAAACTATTGCTATTTCAGAATCTGAACTGCCCCTCACTTTGCCTGAGTTAAATGATT 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2701 GTGAAACTATTGCTATTTCAGAATCTGAACTGCCCCTCACTTTGCCTGAGTTAAATGATT 2760 Query: 279 TTACGCCCACTGGAACAGGGGAACCACCACTGTCAAAAGCAGTTTCATGGGTATGTTTTG 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2761 TTACGCCCACTGGAACAGGGGAACCACCACTGTCAAAAGCAGTTTCATGGGTATGTTTTG 2820 Query: 339 CGGTTAATATGATTAGTTTTTGGGTATGCCT 369 ||||||||||||||||||||||||||||||| Sbjct: 2821 CGGTTAATATGATTAGTTTTTGGGTATGCCT 2851