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At1g05190 SYNGENTA 82754

Genomic Sequence (from TAIR)

ggtaagggcccatttcatttttaaatttgtctgttaagagtagtttaaaatccatgcctttaaaagattcgacttgaaaacatacttaatcgggaaagat
gcacaattttgatccaaacgcatctactaataatctattgacttcattaatctaatccaaactccacgttcattgggtaaattttgtgaacagttattat
aataatgggcctagaaacagtgagataataggccatgatcaatatagataaatgggttacacaaataatgaattgtcccacagaaggatggttaaaagta
atgggccgaaaatagtgagctaatgggccgtgaaagtaatgatttgaaagaggggattacagaagctgacgatggataagtcttttctggataaaacgct
cttcttcttctcttcatcctccttctggagcagagcttagagctccatcatcaaatcttatcaATGGCTTCCTCACTCGTCTCATCTTTTCAACCCAGgt
acttttcatatactacaaaccatagagcttcttcattccgctagggtttcgttttctttacttggcattttctactcaaaaatctctataaactgtgttc
atgagcctcccaagtataaggaatctctttgaatgggttatttttatctttttaaatcgatggcaatgttgaattggttatggactcttgaaattgtgga
tttttatt►tt►gg◄gaatttgaatgtgttatgcggaactcactgtgtaaaaagcaggattctagaggggtttttagccatggaaactgaaagttctaca
agaatgtttctcttccttaatctaacgttatctttgttccaataacagtttctgtgtattggtttagatatatatctggtagagttttactttcttgaca
tgttttatctgaagatagatagataacttcccctttgttttagGTCAGCATTTTTGGGAGATAGAAATGTGTTCAAGGTCTCAAGCACACCTTTTGCTCA
AGTGGGTTACTCCAGTAAGACCATTGAGTGCAAAGAATCAAGGATAGGAAAGCAACCGATCGCTGTACCTTCCAATGTAACCATTGCATTGGAAGGTCAA
GACTTGAAAGTGAAGGGTCCATTAGGAGAGCTGGCTTTAACTTACCCACGCGAAGTTGAGCTTACAAAGGAAGAATCCGGTTTCTTAAGGGTCAAAAAAA
CCGTCGAAACTAGAAGAGCCAACCAAATGCACGGCCTTTTCAGgttacaaacttctcatcttttcttgtcatccaatgaagtccttaacttttttgaggt
taaaagatcgtttgttctctaatctttttttttaacttctgtgtgacttttagGACGCTTACCGATAACATGGTTGTGGGAGTATCAAAGGGATTTGAGA
AAAAGCTTATACTTGTGGGTGTTGGTTATCGTGCAACAGTAGACGGAAAGGAGCTGGTGCTAAATCTCGGGTTTTCACACCCGGTGAAGATGCAGATACC
GGATAGTCTGAAAGTGAAAGTGGAAGAGAACACAAGAATCACTGTGAGTGGATACGACAAGAGCGAAATCGGGCAGTTTGCTGCAACGGTTAGGAAGTGG
AGGCCACCAGAGCCATACAAGGGGAAAGGAGTCAAGTATTCCGATGAGATAGTTCGGAGGAAGGAAGGAAAAGCTGGAAAGAAGAAATGAtcttcatttt
tcattattatctacttacttatctcttcctttcaatgtttatgtgtatttgctcaaatttgtttagaaatgaagatgtttgtgttgggattcttgagtaa
gtttttaaaggaacccattaattgtttttgatgctctgacaaaaatttctttagtgctttgattgaacaagaacttgggcacaaagtgcctcatcggtgt
gattctattgttatgtttccttattgaaccaaaccaatccaaatcggacaaaaatcatggtagataaactttttaaaacaattttttaatctattcttct
tttttttaattacaaattttcttattttcttatatctaaaaaatcgtaacagtaagatattaatatctgtattcttaatttggtagataactttttaaaa
aac

Border_1 (82754_LB2D)


TAACCAATCTCGATACACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGT
TTACACCAAAATAAAAATCCACAATTTCAAGAGTCCATAACCAATTCAACATTGCCATCGATTTAAAAAGATAAAAATAACCCATTCAAAGAGATTCCTT
ATACTTGGGAGGCTCATGAACACAGTTTATAGAGATTTTTGAGTAGAAAATGCCAAGTAAAGAAAACGAAACCCTAGCGGAATGAAGAAGCTCTATGGTT
TGTAGTATATGAAAAGTACCTGGGTTGAAAAGATGAGACGAGTGAGGAAGCCATTGATAAGATTTGATGATGGAGCTCTAAGCTCTGCTCCAGAAGGAGG
ATGAAGAGAAGAAGAAGAGCGTTTTATCCAGAAAAGACTTATCCATCGTCAGCTTCTGTAATCCCCTCTTTCAAATCATTACTTTCACGGCCCATTAGCT
CACTATTTTCGGCCCATTACTTTTAACCATCCTTCTGTGGGACAATTCATTATTTGTGTAACCCATTTATCTATATTGATCATGGCCTATTATCTCACTG
TTTCTAGGCCCATTATTATAATAACTGTTCACAAAATTTACCCAATGAACGGTGGAGTTTGGATTAGATTAATGAAGTCAATAGATTATTAGTAGATGCG
TTTGGATCAAAATTGTGCATCTTTCCCGATTAAGTATGTTTTCAAGTCGAATCTTTTAAAGGCATGGATTTTAAACTACTCTTAACAGACAAATTTAAAA
ATGAAATGGGGCCCTTCCCCTCAGAAAAATCCAACA

Start of BLAST Alignment:	NT 249 / Intron 1 of 2
First 15 bp Perfect Match:	NT 249 / Intron 1 of 2

BLAST Details:
Query Sequence: 82754_LB2D 
Length: (836 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g05190 68414.t00466 ribosomal protein L6 family protei...  1690  8.5e-72   1
At1g13390 68414.t01395 expressed protein                       251  0.0057    1
At5g14280 68418.t01519 DNA-binding storekeeper protein-re...   248  0.0085    1
At1g19870 68414.t02226 calmodulin-binding family protein ...   212  0.37      1


>At1g05190 68414.t00466 ribosomal protein L6 family protein Similar to
           Mycobacterium RlpF (gb|Z84395). ESTs gb|T75785,gb|R30580,gb|T04698
           come from this gene
        Length = 1484

  Minus Strand HSPs:

 Score = 1690 (259.6 bits), Expect = 8.5e-72, P = 8.5e-72
 Identities = 338/338 (100%), Positives = 338/338 (100%), Strand = Minus / Plus

Query:   443 GATAAGTCTTTTCTGGATAAAACGCTCTTCTTCTTCTCTTCATCCTCCTTCTGGAGCAGA 384
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:     1 GATAAGTCTTTTCTGGATAAAACGCTCTTCTTCTTCTCTTCATCCTCCTTCTGGAGCAGA 60

Query:   383 GCTTAGAGCTCCATCATCAAATCTTATCAATGGCTTCCTCACTCGTCTCATCTTTTCAAC 324
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    61 GCTTAGAGCTCCATCATCAAATCTTATCAATGGCTTCCTCACTCGTCTCATCTTTTCAAC 120

Query:   323 CCAGGTACTTTTCATATACTACAAACCATAGAGCTTCTTCATTCCGCTAGGGTTTCGTTT 264
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   121 CCAGGTACTTTTCATATACTACAAACCATAGAGCTTCTTCATTCCGCTAGGGTTTCGTTT 180

Query:   263 TCTTTACTTGGCATTTTCTACTCAAAAATCTCTATAAACTGTGTTCATGAGCCTCCCAAG 204
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   181 TCTTTACTTGGCATTTTCTACTCAAAAATCTCTATAAACTGTGTTCATGAGCCTCCCAAG 240

Query:   203 TATAAGGAATCTCTTTGAATGGGTTATTTTTATCTTTTTAAATCGATGGCAATGTTGAAT 144
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   241 TATAAGGAATCTCTTTGAATGGGTTATTTTTATCTTTTTAAATCGATGGCAATGTTGAAT 300

Query:   143 TGGTTATGGACTCTTGAAATTGTGGATTTTTATTTTGG 106
             ||||||||||||||||||||||||||||||||||||||
Sbjct:   301 TGGTTATGGACTCTTGAAATTGTGGATTTTTATTTTGG 338


>At1g13390 68414.t01395 expressed protein
        Length = 1781

  Minus Strand HSPs:

 Score = 251 (43.7 bits), Expect = 0.0057, P = 0.0057
 Identities = 197/331 (59%), Positives = 197/331 (59%), Strand = Minus / Plus

Border_2 (82754_LB1U)


CATTACACTAGCATCTGAATTTCATAACCAATCTCGATACACCAAATC:AATTCA:TTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTAT
TAAGTTGTCCGCAATGGGGAATTTGAATGTGTTATGCGGAACTCACTGTGTAAAAAGCAGGATTCTAGAGGGGTTTTTAGCCATGGAAACTGAAAGTTCT
ACAAGAATGTTTCTCTTCCTTAATCTAACGTTATCTTTGTTCCAATAACAGTTTCTGTGTATTGGTTTAGATATATATCTGG:TAGAGTTTTACTTTCTT
GACATGTTTTATCTGAAGATAGATAGATAACTTCCCCTTTG:TTTTAGGTC:AGCATTTTTGGGAGATAGAAATGTGTTCAAGGTCTCAAGCACACCTTT
TGCTCAAGTGGGTTACTCCAGTAAGACCATTGAGTGCAAAGAATCAAGGATAGGAAAGCAACCGATCGCTGTACCTTCCAATGTAACCATTGCATTGGAA
GGTCAAGACTTGAAAGTGAAGGGTCCATTAGGAGAGCTGGCTTTAACTTACCCACGCGAAGTTGAGCTTACAAAGGAAGAATCCGGTTTCTTAAGGGTCA
AAAAAACCGTCGAAACTAGAAGAGCCAACCAAATGCACGGYCTTTTCAGGTTACAAACTTCTCATCTTTTCTTGTCATCCAATGAAGTCCTTAACTTTTT
TTGAGGNTAAAAGATCGGTTGGNTCTCTAATCTTTTTTTTTAACTTCT

Start of BLAST Alignment:	NT 245 / Intron 1 of 2
First 15 bp Perfect Match:	NT 247 / Intron 1 of 2

BLAST Details:
Query Sequence: 82754_LB1U 
Length: (743 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g05190 68414.t00466 ribosomal protein L6 family protei...  3026  3.9e-132  1
At1g57770 68414.t06001 amine oxidase family contains simi...   221  0.12      1
At3g26935 68416.t03052 zinc finger (DHHC type) family pro...   204  0.55      1
At1g77800 68414.t08285 PHD finger family protein contains...   196  0.88      1


>At1g05190 68414.t00466 ribosomal protein L6 family protein Similar to
           Mycobacterium RlpF (gb|Z84395). ESTs gb|T75785,gb|R30580,gb|T04698
           come from this gene
        Length = 1484

  Plus Strand HSPs:

 Score = 3026 (460.1 bits), Expect = 3.9e-132, P = 3.9e-132
 Identities = 615/631 (97%), Positives = 616/631 (97%), Strand = Plus / Plus

Query:   113 TGGGGAATTTGAATGTGTTATGCGGAACTCACTGTGTAAAAAGCAGGATTCTAGAGGGGT 172
             | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   335 TTGGGAATTTGAATGTGTTATGCGGAACTCACTGTGTAAAAAGCAGGATTCTAGAGGGGT 394

Query:   173 TTTTAGCCATGGAAACTGAAAGTTCTACAAGAATGTTTCTCTTCCTTAATCTAACGTTAT 232
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   395 TTTTAGCCATGGAAACTGAAAGTTCTACAAGAATGTTTCTCTTCCTTAATCTAACGTTAT 454

Query:   233 CTTTGTTCCAATAACAGTTTCTGTGTATTGGTTTAGATATATATCTGGTAGAGTTTTACT 292
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   455 CTTTGTTCCAATAACAGTTTCTGTGTATTGGTTTAGATATATATCTGGTAGAGTTTTACT 514

Query:   293 TTCTTGACATGTTTTATCTGAAGATAGATAGATAACTTCCCCTTTGTTTTAGGTCAGCAT 352
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   515 TTCTTGACATGTTTTATCTGAAGATAGATAGATAACTTCCCCTTTGTTTTAGGTCAGCAT 574

Query:   353 TTTTGGGAGATAGAAATGTGTTCAAGGTCTCAAGCACACCTTTTGCTCAAGTGGGTTACT 412
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   575 TTTTGGGAGATAGAAATGTGTTCAAGGTCTCAAGCACACCTTTTGCTCAAGTGGGTTACT 634

Query:   413 CCAGTAAGACCATTGAGTGCAAAGAATCAAGGATAGGAAAGCAACCGATCGCTGTACCTT 472
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   635 CCAGTAAGACCATTGAGTGCAAAGAATCAAGGATAGGAAAGCAACCGATCGCTGTACCTT 694

Query:   473 CCAATGTAACCATTGCATTGGAAGGTCAAGACTTGAAAGTGAAGGGTCCATTAGGAGAGC 532
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   695 CCAATGTAACCATTGCATTGGAAGGTCAAGACTTGAAAGTGAAGGGTCCATTAGGAGAGC 754

Query:   533 TGGCTTTAACTTACCCACGCGAAGTTGAGCTTACAAAGGAAGAATCCGGTTTCTTAAGGG 592
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   755 TGGCTTTAACTTACCCACGCGAAGTTGAGCTTACAAAGGAAGAATCCGGTTTCTTAAGGG 814

Query:   593 TCAAAAAAACCGTCGAAACTAGAAGAGCCAACCAAATGCACGGYCTTTTCAGGTTACAAA 652
             |||||||||||||||||||||||||||||||||||||||||||+||||||||||||||||
Sbjct:   815 TCAAAAAAACCGTCGAAACTAGAAGAGCCAACCAAATGCACGGCCTTTTCAGGTTACAAA 874

Query:   653 CTTCTCATCTTTTCTTGTCATCCAATGAAGTCCTTAACTTTTTTTGAGGNTAAAAGATCG 712
             |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct:   875 CTTCTCATCTTTTCTTGTCATCCAATGAAGTCCTTAACTTTTTT-GAGGTTAAAAGATCG 933

Query:   713 GTTGGNTCTCTAATCNNNNNNNNNAACTTCT 743
              |||  |||||||||         |||||||
Sbjct:   934 TTTG-TTCTCTAATCTTTTTTTTTAACTTCT 963


>At1g57770 68414.t06001 amine oxidase family contains similarity to carotenoid
           isomerase [Lycopersicon esculentum] GI:19550437, phytoene
           dehydrogenase (PDH1) GI:433144 from (Cercospora nicotianae);
           contains Pfam profile PF01593 amine oxidase, flavin-containing
        Length = 3085

  Plus Strand HSPs:

 Score = 221 (39.2 bits), Expect = 0.13, P = 0.12
 Identities = 111/175 (63%), Positives = 111/175 (63%), Strand = Plus / Plus